Wall clock time and date at job start Tue Mar 31 2020 19:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47405 * 2 1 4 4 H 1.09004 * 110.54109 * 52.38145 * 3 2 1 5 5 C 1.54274 * 110.48074 * 289.77509 * 3 2 1 6 6 C 1.53878 * 106.59430 * 217.71062 * 5 3 2 7 7 C 1.54263 * 106.60077 * 0.02562 * 6 5 3 8 8 C 1.54884 * 110.48726 * 175.00212 * 3 2 1 9 9 H 1.09003 * 110.75880 * 38.11786 * 8 3 2 10 10 C 1.50701 * 110.75680 * 274.93111 * 8 3 2 11 11 O 1.21287 * 119.99681 * 359.97438 * 10 8 3 12 12 N 1.34769 * 120.00286 * 180.02562 * 10 8 3 13 13 C 1.46506 * 120.00050 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.46933 * 184.97304 * 13 12 10 15 15 N 1.46893 * 115.55928 * 278.53078 * 14 13 12 16 16 C 1.46899 * 111.00375 * 319.87304 * 15 14 13 17 17 C 1.50696 * 109.47604 * 186.80042 * 16 15 14 18 18 O 1.21292 * 120.00062 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00353 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99999 * 179.97438 * 19 17 16 21 21 H 1.07992 * 119.99971 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99700 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00107 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99863 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47021 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47314 * 119.99627 * 24 22 20 27 27 H 1.48501 * 109.46551 * 239.99648 * 24 22 20 28 28 C 1.53004 * 117.49844 * 64.21961 * 14 13 12 29 29 C 1.53002 * 60.03100 * 107.50090 * 28 14 13 30 30 H 1.08993 * 109.47109 * 60.00185 * 1 2 3 31 31 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46945 * 300.00310 * 1 2 3 33 33 H 1.09002 * 109.46945 * 239.99690 * 2 1 3 34 34 H 1.09005 * 109.46782 * 119.99758 * 2 1 3 35 35 H 1.08998 * 110.03336 * 336.99444 * 5 3 2 36 36 H 1.09001 * 110.02852 * 98.42746 * 5 3 2 37 37 H 1.08992 * 110.03251 * 119.29038 * 6 5 3 38 38 H 1.08999 * 110.02766 * 240.66785 * 6 5 3 39 39 H 1.09007 * 110.48701 * 264.93474 * 7 6 5 40 40 H 1.08999 * 110.48459 * 142.28936 * 7 6 5 41 41 H 0.96998 * 120.00297 * 359.97438 * 12 10 8 42 42 H 1.08989 * 109.47288 * 64.97044 * 13 12 10 43 43 H 1.08999 * 109.46845 * 304.96551 * 13 12 10 44 44 H 1.00897 * 111.00076 * 195.92087 * 15 14 13 45 45 H 1.08998 * 109.47186 * 306.80454 * 16 15 14 46 46 H 1.09001 * 109.47049 * 66.79920 * 16 15 14 47 47 H 0.97003 * 119.99575 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00066 * 180.02562 * 23 22 20 49 49 H 1.08996 * 117.49857 * 0.02562 * 28 14 13 50 50 H 1.09000 * 117.49606 * 215.00200 * 28 14 13 51 51 H 1.09004 * 117.49970 * 107.47483 * 29 28 14 52 52 H 1.08998 * 117.49541 * 252.47560 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5802 2.0108 0.8085 5 6 1.7590 2.1144 -1.3600 6 6 2.9738 3.0071 -1.6685 7 6 3.9508 2.8461 -0.4856 8 6 3.5835 1.4717 0.1264 9 1 4.0333 0.6593 -0.4444 10 6 4.0024 1.4015 1.5723 11 8 3.1622 1.3339 2.4444 12 7 5.3104 1.4148 1.8964 13 6 5.7176 1.3459 3.3020 14 6 7.2364 1.5021 3.4012 15 7 8.0170 0.2849 3.1425 16 6 7.3744 -0.8906 3.7451 17 6 8.2811 -2.0860 3.6049 18 8 9.3567 -1.9703 3.0564 19 7 7.8970 -3.2838 4.0889 20 6 8.7217 -4.3714 3.9608 21 1 9.6794 -4.2683 3.4724 22 6 8.3254 -5.6064 4.4593 23 7 7.1603 -5.7317 5.0540 24 14 9.4494 -7.0882 4.2854 25 1 10.6945 -6.6854 3.5835 26 1 9.7879 -7.6136 5.6324 27 1 8.7591 -8.1437 3.5015 28 6 7.8399 2.8361 2.9571 29 6 7.7799 2.4818 4.4443 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.6465 1.3561 -2.1349 36 1 0.8559 2.7214 -1.2969 37 1 3.4507 2.6822 -2.5931 38 1 2.6600 4.0473 -1.7560 39 1 3.7997 3.6409 0.2450 40 1 4.9816 2.8431 -0.8399 41 1 5.9824 1.4691 1.1990 42 1 5.4234 0.3828 3.7188 43 1 5.2328 2.1468 3.8603 44 1 8.9654 0.3868 3.4714 45 1 7.1854 -0.6999 4.8015 46 1 6.4305 -1.0890 3.2374 47 1 7.0366 -3.3764 4.5272 48 1 6.8837 -6.5938 5.4024 49 1 7.1549 3.6026 2.5947 50 1 8.8160 2.8105 2.4726 51 1 8.7164 2.2227 4.9382 52 1 7.0557 3.0154 5.0599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670850743.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:42 Heat of formation + Delta-G solvation = -72.731124 kcal Electronic energy + Delta-G solvation = -29634.409828 eV Core-core repulsion = 25633.323852 eV Total energy + Delta-G solvation = -4001.085976 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.40585 -39.08993 -37.98468 -37.45555 -34.26119 -34.03382 -33.26924 -32.74924 -31.21956 -29.92444 -27.80148 -26.88545 -26.55533 -24.07046 -23.14642 -22.56200 -21.75066 -20.15731 -19.95132 -19.47179 -19.27458 -17.93912 -17.43546 -16.61289 -16.08448 -15.68632 -15.60584 -15.23372 -14.78193 -14.67559 -14.47997 -14.31980 -14.04385 -13.97830 -13.53988 -13.40897 -13.16861 -13.11364 -12.76753 -12.41679 -12.33655 -12.17004 -12.04415 -11.69772 -11.63134 -11.51425 -11.48982 -11.38824 -11.14191 -10.93573 -10.89261 -10.71356 -10.61300 -10.57175 -10.38504 -10.35923 -10.24105 -9.73851 -9.55169 -9.06416 -8.44729 -8.06842 -7.98451 -6.44107 -3.85333 2.63206 3.02047 3.14657 3.25555 3.32511 3.71042 3.85136 4.05221 4.19655 4.24614 4.31581 4.45641 4.47759 4.68069 4.86164 4.90662 4.98600 5.04249 5.07328 5.15216 5.17676 5.23346 5.26153 5.37984 5.41132 5.47811 5.50303 5.51820 5.55320 5.59549 5.68238 5.70969 5.76977 5.78702 5.82545 5.84787 5.95183 5.96586 5.99662 6.01380 6.04095 6.21617 6.22275 6.29549 6.41217 7.11337 7.49064 7.52976 7.55363 8.02906 8.22146 8.57005 9.14504 9.50458 10.00832 10.73436 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.002653 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.039806 B =10553.439294 C =12410.469598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.071 4.071 4 H 0.087 0.913 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.112 4.112 8 C -0.113 4.113 9 H 0.103 0.897 10 C 0.520 3.480 11 O -0.542 6.542 12 N -0.718 5.718 13 C 0.157 3.843 14 C 0.038 3.962 15 N -0.627 5.627 16 C 0.048 3.952 17 C 0.439 3.561 18 O -0.587 6.587 19 N -0.560 5.560 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.899 5.899 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 C -0.161 4.161 29 C -0.207 4.207 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.406 0.594 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.356 0.644 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.393 0.607 48 H 0.272 0.728 49 H 0.097 0.903 50 H 0.100 0.900 51 H 0.098 0.902 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.130 18.917 -9.325 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.089 4.089 4 H 0.105 0.895 5 C -0.159 4.159 6 C -0.161 4.161 7 C -0.150 4.150 8 C -0.135 4.135 9 H 0.121 0.879 10 C 0.306 3.694 11 O -0.419 6.419 12 N -0.370 5.370 13 C 0.033 3.967 14 C -0.056 4.056 15 N -0.259 5.259 16 C -0.084 4.084 17 C 0.224 3.776 18 O -0.472 6.472 19 N -0.196 5.196 20 C -0.430 4.430 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.540 5.540 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.199 4.199 29 C -0.247 4.247 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.241 0.759 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.178 0.822 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.116 0.884 50 H 0.119 0.881 51 H 0.116 0.884 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.363 18.614 -9.596 23.365 hybrid contribution 0.604 -0.744 0.922 1.330 sum -9.759 17.870 -8.674 22.131 Atomic orbital electron populations 1.21741 0.95836 1.01478 1.01597 1.21555 0.96025 0.95727 1.02163 1.21868 0.92443 0.96930 0.97695 0.89504 1.22252 0.97960 0.98680 0.96974 1.22111 0.95892 1.00005 0.98065 1.22307 0.99742 0.95362 0.97583 1.22389 0.98239 0.99941 0.92896 0.87886 1.20519 0.82121 0.75630 0.91131 1.90694 1.51088 1.49499 1.50664 1.45939 1.07377 1.74907 1.08748 1.20863 0.89975 1.02906 0.82919 1.21836 0.92588 0.87988 1.03147 1.59987 1.05379 0.99264 1.61231 1.21737 0.98442 0.90504 0.97732 1.19755 0.88472 0.84371 0.84982 1.90521 1.24160 1.84772 1.47716 1.41861 1.19518 1.07183 1.51062 1.19749 1.01347 0.86237 1.35650 0.87834 1.25284 0.96809 0.99184 0.96637 1.69623 1.19911 1.26033 1.38456 0.85796 0.79942 0.80615 0.77973 1.19200 1.20727 1.20692 1.23085 1.02953 0.96878 0.97014 1.23685 1.03556 1.04916 0.92543 0.92950 0.92899 0.92697 0.92146 0.91465 0.91513 0.91748 0.91553 0.91706 0.91241 0.90860 0.75894 0.90448 0.90819 0.82208 0.93365 0.89366 0.77393 0.91838 0.88433 0.88133 0.88360 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.79 37.16 0.36 -0.96 16 2 C -0.12 -1.17 5.32 -26.73 -0.14 -1.31 16 3 C -0.07 -0.67 1.93 -88.96 -0.17 -0.84 16 4 H 0.09 0.98 7.44 -51.93 -0.39 0.59 16 5 C -0.12 -0.90 5.69 -25.61 -0.15 -1.04 16 6 C -0.12 -0.82 6.80 -25.61 -0.17 -0.99 16 7 C -0.11 -0.83 6.26 -25.09 -0.16 -0.99 16 8 C -0.11 -1.07 2.71 -89.79 -0.24 -1.31 16 9 H 0.10 0.92 8.06 -51.93 -0.42 0.51 16 10 C 0.52 6.39 7.13 -10.99 -0.08 6.31 16 11 O -0.54 -8.59 15.72 5.55 0.09 -8.51 16 12 N -0.72 -8.06 5.50 -60.29 -0.33 -8.40 16 13 C 0.16 1.91 5.31 -4.04 -0.02 1.89 16 14 C 0.04 0.45 2.21 -131.56 -0.29 0.15 16 15 N -0.63 -9.64 6.51 -101.18 -0.66 -10.30 16 16 C 0.05 0.84 5.14 -4.98 -0.03 0.82 16 17 C 0.44 10.26 7.81 -10.99 -0.09 10.18 16 18 O -0.59 -15.66 15.62 5.55 0.09 -15.57 16 19 N -0.56 -14.21 5.29 -10.97 -0.06 -14.27 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 24 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 C -0.16 -1.57 10.12 -26.73 -0.27 -1.84 16 29 C -0.21 -2.12 9.90 -26.69 -0.26 -2.39 16 30 H 0.05 0.40 7.62 -51.93 -0.40 0.01 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.55 7.95 -51.93 -0.41 0.14 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.47 7.71 -51.93 -0.40 0.07 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.55 8.04 -51.92 -0.42 0.14 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.41 4.07 8.48 -40.82 -0.35 3.72 16 42 H 0.08 1.08 5.95 -51.94 -0.31 0.77 16 43 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 44 H 0.36 5.80 8.01 -39.29 -0.31 5.49 16 45 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 46 H 0.09 1.51 6.79 -51.93 -0.35 1.16 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.10 1.03 8.12 -51.93 -0.42 0.61 16 52 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 LS Contribution 418.79 15.07 6.31 6.31 Total: -1.00 -31.78 418.79 -9.88 -41.66 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -9.07 Total: 17.24 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.95 Total: -0.33 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.32 Total: -56.80 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.17 Total: -24.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -31.78 -9.88 -41.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670850743.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.075 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds