Wall clock time and date at job start Tue Mar 31 2020 19:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47405 * 2 1 4 4 H 1.09004 * 110.54109 * 52.38145 * 3 2 1 5 5 C 1.54274 * 110.48074 * 289.77509 * 3 2 1 6 6 C 1.53878 * 106.59430 * 217.71062 * 5 3 2 7 7 C 1.54263 * 106.60077 * 0.02562 * 6 5 3 8 8 C 1.54884 * 110.48726 * 175.00212 * 3 2 1 9 9 H 1.09003 * 110.75880 * 38.11786 * 8 3 2 10 10 C 1.50701 * 110.75680 * 274.93111 * 8 3 2 11 11 O 1.21287 * 119.99681 * 359.97438 * 10 8 3 12 12 N 1.34769 * 120.00286 * 180.02562 * 10 8 3 13 13 C 1.46506 * 120.00050 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.46933 * 184.97304 * 13 12 10 15 15 N 1.46893 * 115.55928 * 278.53078 * 14 13 12 16 16 C 1.46899 * 111.00375 * 319.87304 * 15 14 13 17 17 C 1.50696 * 109.47604 * 186.80042 * 16 15 14 18 18 O 1.21292 * 120.00062 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00353 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99999 * 179.97438 * 19 17 16 21 21 H 1.07992 * 119.99971 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99700 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00107 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99863 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47021 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47314 * 119.99627 * 24 22 20 27 27 H 1.48501 * 109.46551 * 239.99648 * 24 22 20 28 28 C 1.53004 * 117.49844 * 64.21961 * 14 13 12 29 29 C 1.53002 * 60.03100 * 107.50090 * 28 14 13 30 30 H 1.08993 * 109.47109 * 60.00185 * 1 2 3 31 31 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46945 * 300.00310 * 1 2 3 33 33 H 1.09002 * 109.46945 * 239.99690 * 2 1 3 34 34 H 1.09005 * 109.46782 * 119.99758 * 2 1 3 35 35 H 1.08998 * 110.03336 * 336.99444 * 5 3 2 36 36 H 1.09001 * 110.02852 * 98.42746 * 5 3 2 37 37 H 1.08992 * 110.03251 * 119.29038 * 6 5 3 38 38 H 1.08999 * 110.02766 * 240.66785 * 6 5 3 39 39 H 1.09007 * 110.48701 * 264.93474 * 7 6 5 40 40 H 1.08999 * 110.48459 * 142.28936 * 7 6 5 41 41 H 0.96998 * 120.00297 * 359.97438 * 12 10 8 42 42 H 1.08989 * 109.47288 * 64.97044 * 13 12 10 43 43 H 1.08999 * 109.46845 * 304.96551 * 13 12 10 44 44 H 1.00897 * 111.00076 * 195.92087 * 15 14 13 45 45 H 1.08998 * 109.47186 * 306.80454 * 16 15 14 46 46 H 1.09001 * 109.47049 * 66.79920 * 16 15 14 47 47 H 0.97003 * 119.99575 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00066 * 180.02562 * 23 22 20 49 49 H 1.08996 * 117.49857 * 0.02562 * 28 14 13 50 50 H 1.09000 * 117.49606 * 215.00200 * 28 14 13 51 51 H 1.09004 * 117.49970 * 107.47483 * 29 28 14 52 52 H 1.08998 * 117.49541 * 252.47560 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5802 2.0108 0.8085 5 6 1.7590 2.1144 -1.3600 6 6 2.9738 3.0071 -1.6685 7 6 3.9508 2.8461 -0.4856 8 6 3.5835 1.4717 0.1264 9 1 4.0333 0.6593 -0.4444 10 6 4.0024 1.4015 1.5723 11 8 3.1622 1.3339 2.4444 12 7 5.3104 1.4148 1.8964 13 6 5.7176 1.3459 3.3020 14 6 7.2364 1.5021 3.4012 15 7 8.0170 0.2849 3.1425 16 6 7.3744 -0.8906 3.7451 17 6 8.2811 -2.0860 3.6049 18 8 9.3567 -1.9703 3.0564 19 7 7.8970 -3.2838 4.0889 20 6 8.7217 -4.3714 3.9608 21 1 9.6794 -4.2683 3.4724 22 6 8.3254 -5.6064 4.4593 23 7 7.1603 -5.7317 5.0540 24 14 9.4494 -7.0882 4.2854 25 1 10.6945 -6.6854 3.5835 26 1 9.7879 -7.6136 5.6324 27 1 8.7591 -8.1437 3.5015 28 6 7.8399 2.8361 2.9571 29 6 7.7799 2.4818 4.4443 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.6465 1.3561 -2.1349 36 1 0.8559 2.7214 -1.2969 37 1 3.4507 2.6822 -2.5931 38 1 2.6600 4.0473 -1.7560 39 1 3.7997 3.6409 0.2450 40 1 4.9816 2.8431 -0.8399 41 1 5.9824 1.4691 1.1990 42 1 5.4234 0.3828 3.7188 43 1 5.2328 2.1468 3.8603 44 1 8.9654 0.3868 3.4714 45 1 7.1854 -0.6999 4.8015 46 1 6.4305 -1.0890 3.2374 47 1 7.0366 -3.3764 4.5272 48 1 6.8837 -6.5938 5.4024 49 1 7.1549 3.6026 2.5947 50 1 8.8160 2.8105 2.4726 51 1 8.7164 2.2227 4.9382 52 1 7.0557 3.0154 5.0599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670850743.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:41 Heat of formation + Delta-G solvation = -94.816778 kcal Electronic energy + Delta-G solvation = -29635.367534 eV Core-core repulsion = 25633.323852 eV Total energy + Delta-G solvation = -4002.043682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33043 -40.41513 -39.42587 -38.38668 -36.06509 -35.21013 -34.10163 -34.00047 -33.24448 -30.66781 -28.47149 -28.26748 -27.76896 -25.88624 -23.92356 -23.37097 -22.49797 -21.24593 -21.00830 -20.70180 -20.29650 -19.95358 -18.39875 -17.98661 -17.10064 -16.97857 -16.64305 -16.44521 -16.30060 -15.87067 -15.65318 -15.61731 -15.36349 -15.02808 -14.47684 -14.31342 -14.18566 -14.14663 -13.89314 -13.80972 -13.55661 -13.51572 -12.97653 -12.96256 -12.88540 -12.73960 -12.43711 -12.40199 -12.17085 -12.12542 -12.01763 -11.94959 -11.60603 -11.54627 -11.44673 -11.33015 -11.29110 -11.21504 -10.73384 -10.39890 -10.06017 -10.04505 -9.22144 -8.49594 -5.99097 1.34843 1.40550 1.55021 1.66827 1.98412 2.11919 2.26238 2.67203 3.02130 3.17441 3.40751 3.49034 3.57424 3.64075 3.72229 3.77902 4.01674 4.14911 4.21440 4.30677 4.31932 4.39824 4.46990 4.49832 4.50576 4.59094 4.59565 4.62472 4.70722 4.72330 4.76478 4.77842 4.84519 4.94659 5.00163 5.06418 5.15925 5.21464 5.23475 5.26082 5.31874 5.38276 5.39447 5.44902 5.49200 5.59065 5.82505 6.02769 6.27868 6.54317 6.59835 7.08142 7.27811 7.50431 8.04163 8.67986 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.002653 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.039806 B =10553.439294 C =12410.469598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.070 4.070 4 H 0.064 0.936 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.107 4.107 8 C -0.112 4.112 9 H 0.110 0.890 10 C 0.516 3.484 11 O -0.584 6.584 12 N -0.710 5.710 13 C 0.161 3.839 14 C 0.022 3.978 15 N -0.633 5.633 16 C 0.067 3.933 17 C 0.438 3.562 18 O -0.621 6.621 19 N -0.571 5.571 20 C -0.333 4.333 21 H 0.081 0.919 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.995 3.005 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.271 1.271 28 C -0.140 4.140 29 C -0.199 4.199 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.414 0.586 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.351 0.649 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.116 0.884 50 H 0.102 0.898 51 H 0.096 0.904 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.091 20.132 -10.537 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.089 4.089 4 H 0.082 0.918 5 C -0.154 4.154 6 C -0.157 4.157 7 C -0.144 4.144 8 C -0.133 4.133 9 H 0.128 0.872 10 C 0.304 3.696 11 O -0.464 6.464 12 N -0.361 5.361 13 C 0.036 3.964 14 C -0.071 4.071 15 N -0.265 5.265 16 C -0.065 4.065 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.208 5.208 20 C -0.463 4.463 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.178 4.178 29 C -0.239 4.239 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.250 0.750 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.172 0.828 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.134 0.866 50 H 0.121 0.879 51 H 0.115 0.885 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.327 19.856 -10.815 24.857 hybrid contribution 0.584 -1.064 1.323 1.796 sum -9.744 18.791 -9.492 23.198 Atomic orbital electron populations 1.21723 0.95048 1.01698 1.01934 1.21547 0.96804 0.96035 1.01099 1.21824 0.92378 0.96346 0.98393 0.91756 1.22226 0.98719 0.98941 0.95521 1.22117 0.95193 1.00417 0.98013 1.22313 1.00966 0.93534 0.97636 1.22442 0.98257 1.01630 0.91019 0.87159 1.21060 0.81910 0.74588 0.92036 1.90675 1.52162 1.51465 1.52078 1.45912 1.07332 1.74156 1.08700 1.20763 0.90268 1.01951 0.83373 1.21795 0.91904 0.87405 1.05959 1.59998 1.05306 0.99863 1.61292 1.21509 0.97005 0.89030 0.98983 1.20721 0.88532 0.85170 0.83020 1.90488 1.25974 1.85518 1.48790 1.41946 1.19462 1.07580 1.51804 1.19719 1.01394 0.87888 1.37271 0.90060 1.26094 0.98193 1.01333 0.95731 1.69689 1.20929 1.27024 1.38497 0.84846 0.77874 0.77121 0.78352 1.19564 1.19553 1.19630 1.23159 1.03065 0.95052 0.96493 1.23734 1.03527 1.03589 0.93044 0.91255 0.92755 0.93669 0.91106 0.94505 0.90735 0.91214 0.90370 0.90756 0.91807 0.89262 0.74981 0.92589 0.90266 0.82840 0.91833 0.88815 0.77142 0.91256 0.86572 0.87910 0.88522 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.79 71.98 0.70 -1.88 16 2 C -0.12 -2.36 5.32 30.59 0.16 -2.20 16 3 C -0.07 -1.31 1.93 -9.72 -0.02 -1.33 16 4 H 0.06 1.50 7.44 -2.38 -0.02 1.48 16 5 C -0.12 -1.50 5.69 31.32 0.18 -1.33 16 6 C -0.12 -1.28 6.80 31.32 0.21 -1.07 16 7 C -0.11 -1.37 6.26 31.66 0.20 -1.17 16 8 C -0.11 -2.03 2.71 -10.26 -0.03 -2.06 16 9 H 0.11 1.84 8.06 -2.39 -0.02 1.82 16 10 C 0.52 12.66 7.13 87.66 0.62 13.28 16 11 O -0.58 -19.08 15.72 -3.05 -0.05 -19.12 16 12 N -0.71 -15.38 5.50 -463.06 -2.55 -17.92 16 13 C 0.16 3.79 5.31 86.38 0.46 4.25 16 14 C 0.02 0.48 2.21 3.56 0.01 0.49 16 15 N -0.63 -19.08 6.51 -474.03 -3.08 -22.17 16 16 C 0.07 2.35 5.14 85.56 0.44 2.79 16 17 C 0.44 20.91 7.81 87.66 0.68 21.60 16 18 O -0.62 -33.89 15.62 -3.07 -0.05 -33.94 16 19 N -0.57 -29.74 5.29 -306.99 -1.62 -31.36 16 20 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 21 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -50.38 13.05 21.66 0.28 -50.09 16 24 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 28 C -0.14 -2.35 10.12 30.60 0.31 -2.04 16 29 C -0.20 -3.65 9.90 30.62 0.30 -3.35 16 30 H 0.07 0.98 7.62 -2.39 -0.02 0.96 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.25 7.95 -2.39 -0.02 1.23 16 34 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.07 0.87 7.71 -2.39 -0.02 0.85 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.90 8.04 -2.38 -0.02 0.88 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.41 7.67 8.48 -92.71 -0.79 6.88 16 42 H 0.06 1.57 5.95 -2.39 -0.01 1.55 16 43 H 0.08 1.80 7.93 -2.39 -0.02 1.78 16 44 H 0.35 11.29 8.01 -89.70 -0.72 10.57 16 45 H 0.06 2.05 8.11 -2.39 -0.02 2.03 16 46 H 0.09 3.23 6.79 -2.39 -0.02 3.21 16 47 H 0.39 19.85 7.90 -92.71 -0.73 19.12 16 48 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 49 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.10 1.85 8.12 -2.38 -0.02 1.83 16 52 H 0.11 1.75 8.08 -2.39 -0.02 1.73 16 Total: -1.00 -70.10 418.79 -0.82 -70.92 By element: Atomic # 1 Polarization: 52.37 SS G_CDS: -1.30 Total: 51.07 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 5.52 Total: 7.51 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -6.97 Total: -121.55 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.10 Total: -53.06 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -70.10 -0.82 -70.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670850743.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.893 kcal (2) G-P(sol) polarization free energy of solvation -70.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds