Wall clock time and date at job start Tue Mar 31 2020 19:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 H 1.09006 * 110.01530 * 53.43199 * 3 2 1 5 5 C 1.54269 * 110.07203 * 292.02094 * 3 2 1 6 6 C 1.54892 * 104.19401 * 217.08352 * 5 3 2 7 7 C 1.54887 * 102.74893 * 37.93708 * 6 5 3 8 8 C 1.53870 * 110.03567 * 174.82968 * 3 2 1 9 9 H 1.09003 * 110.02914 * 238.66803 * 8 3 2 10 10 C 1.50704 * 110.02990 * 0.04395 * 8 3 2 11 11 O 1.21280 * 119.99724 * 86.09197 * 10 8 3 12 12 N 1.34776 * 120.00027 * 266.09235 * 10 8 3 13 13 C 1.46496 * 119.99906 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.47422 * 182.37052 * 13 12 10 15 15 N 1.46900 * 115.55043 * 36.44672 * 14 13 12 16 16 C 1.46909 * 110.99701 * 64.24365 * 15 14 13 17 17 C 1.50698 * 109.46900 * 174.64346 * 16 15 14 18 18 O 1.21297 * 120.00054 * 0.02562 * 17 16 15 19 19 N 1.34771 * 119.99887 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99991 * 180.02562 * 19 17 16 21 21 H 1.07992 * 120.00074 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99703 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00410 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99844 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47508 * 59.99847 * 24 22 20 26 26 H 1.48503 * 109.47462 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47292 * 299.99834 * 24 22 20 28 28 C 1.53001 * 117.49725 * 250.74619 * 14 13 12 29 29 C 1.52995 * 117.49979 * 182.12355 * 14 13 12 30 30 H 1.09000 * 109.47503 * 60.00149 * 1 2 3 31 31 H 1.09003 * 109.46982 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47193 * 299.99825 * 1 2 3 33 33 H 1.08998 * 109.47193 * 240.00175 * 2 1 3 34 34 H 1.08998 * 109.46985 * 119.99838 * 2 1 3 35 35 H 1.08997 * 110.48739 * 335.75744 * 5 3 2 36 36 H 1.08998 * 110.49109 * 98.26755 * 5 3 2 37 37 H 1.08997 * 110.75798 * 156.25559 * 6 5 3 38 38 H 1.09002 * 110.75283 * 279.43709 * 6 5 3 39 39 H 1.09001 * 110.48613 * 203.38089 * 7 6 5 40 40 H 1.09002 * 110.48503 * 80.73800 * 7 6 5 41 41 H 0.97005 * 119.99868 * 0.02562 * 12 10 8 42 42 H 1.08997 * 109.47815 * 62.36539 * 13 12 10 43 43 H 1.09004 * 109.46978 * 302.36470 * 13 12 10 44 44 H 1.00898 * 111.00294 * 300.29584 * 15 14 13 45 45 H 1.09000 * 109.46904 * 294.64010 * 16 15 14 46 46 H 1.08995 * 109.47209 * 54.64372 * 16 15 14 47 47 H 0.97003 * 120.00136 * 359.97438 * 19 17 16 48 48 H 0.97003 * 120.00461 * 180.02562 * 23 22 20 49 49 H 1.09001 * 117.50025 * 359.97438 * 28 14 13 50 50 H 1.08997 * 117.49933 * 145.01483 * 28 14 13 51 51 H 1.09008 * 117.49708 * 214.97720 * 29 14 13 52 52 H 1.08997 * 117.50023 * 359.97438 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5890 1.9977 0.8226 5 6 1.7042 2.1228 -1.3433 6 6 2.9333 3.0199 -1.6323 7 6 4.1155 2.1496 -1.1382 8 6 3.5730 1.4596 0.1303 9 1 3.8661 2.0223 1.0166 10 6 4.0995 0.0502 0.2166 11 8 4.3336 -0.5728 -0.7973 12 7 4.3103 -0.5179 1.4205 13 6 4.8226 -1.8878 1.5044 14 6 4.9143 -2.3091 2.9724 15 7 3.8433 -1.8073 3.8437 16 6 2.5398 -2.3547 3.4442 17 6 1.4894 -1.9248 4.4356 18 8 1.7963 -1.2304 5.3816 19 7 0.2088 -2.3112 4.2705 20 6 -0.7469 -1.9197 5.1722 21 1 -0.4736 -1.3021 6.0149 22 6 -2.0671 -2.3185 5.0022 23 7 -2.3996 -3.0705 3.9771 24 14 -3.3692 -1.7858 6.2311 25 1 -3.4436 -0.3030 6.2620 26 1 -4.6867 -2.3396 5.8277 27 1 -3.0125 -2.2918 7.5809 28 6 6.3110 -2.4525 3.5802 29 6 5.4779 -3.6989 3.2746 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5832 1.3769 -2.1289 36 1 0.8018 2.7270 -1.2500 37 1 3.0218 3.2216 -2.6998 38 1 2.8731 3.9509 -1.0685 39 1 4.9741 2.7754 -0.8946 40 1 4.3839 1.4081 -1.8907 41 1 4.1227 -0.0197 2.2314 42 1 5.8125 -1.9340 1.0506 43 1 4.1484 -2.5609 0.9747 44 1 3.8251 -0.7985 3.8500 45 1 2.2780 -1.9832 2.4534 46 1 2.5943 -3.4430 3.4215 47 1 -0.0368 -2.8656 3.5134 48 1 -3.3213 -3.3486 3.8583 49 1 7.1646 -2.2472 2.9342 50 1 6.4355 -2.1744 4.6268 51 1 5.0543 -4.2409 4.1202 52 1 5.7831 -4.3134 2.4276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670850744.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:44 Heat of formation + Delta-G solvation = -86.119741 kcal Electronic energy + Delta-G solvation = -30983.710871 eV Core-core repulsion = 26982.044321 eV Total energy + Delta-G solvation = -4001.666550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.65089 -40.34390 -39.37780 -38.27458 -35.99799 -35.26006 -34.12302 -34.07550 -33.20144 -30.73697 -28.55718 -28.38413 -27.59426 -25.91270 -23.89199 -23.36882 -22.61823 -21.50590 -21.15189 -20.76293 -20.11548 -19.87885 -18.22005 -17.84394 -17.41942 -16.83773 -16.78137 -16.51162 -16.23750 -16.00710 -15.71382 -15.46229 -15.19637 -15.13395 -15.03097 -14.47317 -14.33890 -14.13621 -14.04252 -13.67532 -13.48994 -13.38328 -13.06919 -12.99085 -12.76525 -12.51187 -12.42570 -12.29942 -12.27736 -12.13516 -11.91253 -11.84556 -11.64004 -11.50578 -11.50145 -11.48690 -11.41184 -10.99682 -10.71842 -10.36240 -10.09887 -10.01048 -9.52197 -8.45564 -5.94330 1.39292 1.41718 1.52125 1.59637 2.03265 2.06668 2.28390 2.70704 2.86663 3.21447 3.42228 3.45482 3.57623 3.59274 3.64982 3.98620 4.02258 4.10706 4.14731 4.24693 4.32230 4.36049 4.37726 4.48075 4.50763 4.56619 4.60945 4.64754 4.65289 4.69804 4.72673 4.77087 4.82264 4.83080 5.01480 5.07175 5.09389 5.13854 5.19596 5.23308 5.28451 5.32954 5.35050 5.40371 5.41273 5.50796 5.82742 6.05397 6.27154 6.43901 6.59389 7.12811 7.17421 7.55651 8.10309 8.71281 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008761 B = 0.003975 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.187865 B = 7042.465332 C = 9481.627996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C -0.076 4.076 4 H 0.085 0.915 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.109 4.109 8 C -0.112 4.112 9 H 0.109 0.891 10 C 0.529 3.471 11 O -0.575 6.575 12 N -0.724 5.724 13 C 0.138 3.862 14 C 0.004 3.996 15 N -0.630 5.630 16 C 0.072 3.928 17 C 0.441 3.559 18 O -0.618 6.618 19 N -0.570 5.570 20 C -0.332 4.332 21 H 0.080 0.920 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.989 3.011 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.136 4.136 29 C -0.149 4.149 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.402 0.598 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.345 0.655 45 H 0.056 0.944 46 H 0.096 0.904 47 H 0.394 0.606 48 H 0.277 0.723 49 H 0.118 0.882 50 H 0.098 0.902 51 H 0.093 0.907 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.638 7.544 -11.068 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.103 0.897 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.133 4.133 9 H 0.128 0.872 10 C 0.317 3.683 11 O -0.454 6.454 12 N -0.377 5.377 13 C 0.012 3.988 14 C -0.089 4.089 15 N -0.262 5.262 16 C -0.060 4.060 17 C 0.228 3.772 18 O -0.504 6.504 19 N -0.207 5.207 20 C -0.461 4.461 21 H 0.098 0.902 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.813 3.187 25 H -0.195 1.195 26 H -0.197 1.197 27 H -0.198 1.198 28 C -0.173 4.173 29 C -0.187 4.187 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.239 0.761 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.165 0.835 45 H 0.074 0.926 46 H 0.114 0.886 47 H 0.227 0.773 48 H 0.086 0.914 49 H 0.136 0.864 50 H 0.116 0.884 51 H 0.111 0.889 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.917 6.994 -10.703 18.899 hybrid contribution -1.402 0.158 -0.038 1.412 sum 12.515 7.152 -10.741 17.976 Atomic orbital electron populations 1.21694 0.95314 1.01323 1.01925 1.21726 0.96491 0.96706 1.00854 1.21752 0.92116 0.95758 0.99906 0.89654 1.22438 0.99024 0.98561 0.95404 1.22470 0.93087 0.97994 1.01805 1.22332 0.98818 0.98522 0.95045 1.22148 0.96679 0.92017 1.02446 0.87248 1.20813 0.75583 0.89370 0.82548 1.90651 1.53216 1.65532 1.36013 1.46102 1.67019 1.15906 1.08660 1.21246 0.99858 0.82657 0.95036 1.21695 0.93912 1.03577 0.89681 1.59915 1.01514 1.13560 1.51245 1.21410 0.88330 1.01330 0.94973 1.20694 0.83642 0.84386 0.88499 1.90494 1.81491 1.43252 1.35209 1.41896 1.06441 1.46708 1.25621 1.19608 0.88479 1.31221 1.06810 0.90186 1.25989 0.99561 0.96317 0.99111 1.69672 1.20425 1.35991 1.29898 0.85044 0.76963 0.78658 0.78034 1.19542 1.19675 1.19775 1.23210 0.91530 1.00141 1.02413 1.23124 1.02037 0.89767 1.03782 0.91259 0.93961 0.93465 0.92694 0.93499 0.92290 0.90407 0.90456 0.89901 0.89874 0.91818 0.76098 0.90101 0.92537 0.83456 0.92641 0.88580 0.77304 0.91388 0.86431 0.88395 0.88900 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.77 71.98 0.70 -3.31 16 2 C -0.12 -3.22 4.12 30.59 0.13 -3.09 16 3 C -0.08 -1.64 2.92 -10.07 -0.03 -1.67 16 4 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 5 C -0.12 -2.15 5.54 31.67 0.18 -1.98 16 6 C -0.12 -1.75 6.91 31.89 0.22 -1.53 16 7 C -0.11 -1.97 6.31 31.66 0.20 -1.77 16 8 C -0.11 -2.23 3.29 -10.82 -0.04 -2.27 16 9 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 10 C 0.53 13.15 4.68 87.66 0.41 13.56 16 11 O -0.57 -18.13 15.02 -3.03 -0.05 -18.17 16 12 N -0.72 -16.21 4.73 -463.06 -2.19 -18.40 16 13 C 0.14 3.08 5.13 86.38 0.44 3.52 16 14 C 0.00 0.08 2.07 3.53 0.01 0.09 16 15 N -0.63 -18.54 5.95 -474.14 -2.82 -21.36 16 16 C 0.07 2.46 5.92 85.55 0.51 2.96 16 17 C 0.44 20.52 7.83 87.66 0.69 21.21 16 18 O -0.62 -33.15 15.89 -3.08 -0.05 -33.19 16 19 N -0.57 -28.93 5.29 -306.99 -1.62 -30.55 16 20 C -0.33 -18.57 9.68 84.04 0.81 -17.76 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 23 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 24 Si 0.99 42.55 29.55 68.60 2.03 44.57 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 C -0.14 -2.44 10.10 30.59 0.31 -2.13 16 29 C -0.15 -2.93 10.17 30.59 0.31 -2.62 16 30 H 0.07 1.63 7.52 -2.39 -0.02 1.62 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 1.62 7.10 -2.39 -0.02 1.60 16 34 H 0.05 1.38 5.99 -2.39 -0.01 1.37 16 35 H 0.06 1.22 7.76 -2.39 -0.02 1.20 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.45 6.89 -2.39 -0.02 1.43 16 41 H 0.40 8.41 6.67 -92.70 -0.62 7.79 16 42 H 0.08 1.67 7.91 -2.39 -0.02 1.65 16 43 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.34 10.11 6.88 -89.70 -0.62 9.49 16 45 H 0.06 1.81 6.75 -2.39 -0.02 1.79 16 46 H 0.10 3.14 8.12 -2.39 -0.02 3.12 16 47 H 0.39 19.37 7.90 -92.71 -0.73 18.64 16 48 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.12 1.61 8.06 -2.39 -0.02 1.60 16 50 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 52 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -67.82 411.50 -0.13 -67.95 By element: Atomic # 1 Polarization: 56.12 SS G_CDS: -1.03 Total: 55.09 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 5.32 Total: 3.16 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -6.35 Total: -119.42 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -0.09 Total: -51.37 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -67.82 -0.13 -67.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670850744.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.166 kcal (2) G-P(sol) polarization free energy of solvation -67.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds