Wall clock time and date at job start Tue Mar 31 2020 19:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47076 * 2 1 4 4 H 1.08994 * 110.05840 * 306.48926 * 3 2 1 5 5 C 1.54368 * 110.04533 * 67.96841 * 3 2 1 6 6 C 1.54887 * 104.19840 * 142.90813 * 5 3 2 7 7 C 1.54888 * 102.74817 * 322.02898 * 6 5 3 8 8 C 1.53876 * 110.02858 * 185.07714 * 3 2 1 9 9 H 1.08997 * 110.03118 * 121.38318 * 8 3 2 10 10 C 1.50700 * 110.03600 * 0.02562 * 8 3 2 11 11 O 1.21290 * 119.99709 * 275.66499 * 10 8 3 12 12 N 1.34767 * 119.99961 * 95.66278 * 10 8 3 13 13 C 1.46506 * 120.00106 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47235 * 174.44938 * 13 12 10 15 15 N 1.46893 * 115.55012 * 323.52653 * 14 13 12 16 16 C 1.46901 * 111.00041 * 294.51791 * 15 14 13 17 17 C 1.50704 * 109.47215 * 180.80292 * 16 15 14 18 18 O 1.21294 * 119.99832 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99932 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99677 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99967 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99358 * 179.72356 * 20 19 17 23 23 N 1.31405 * 120.00497 * 0.27400 * 22 20 19 24 24 Si 1.86807 * 119.99625 * 180.27138 * 22 20 19 25 25 H 1.48497 * 109.46969 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47097 * 120.00100 * 24 22 20 27 27 H 1.48498 * 109.47154 * 240.00001 * 24 22 20 28 28 C 1.53003 * 117.49925 * 109.19811 * 14 13 12 29 29 C 1.52998 * 117.49768 * 177.85509 * 14 13 12 30 30 H 1.09000 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46830 * 299.99493 * 1 2 3 32 32 H 1.08995 * 109.47747 * 59.99203 * 1 2 3 33 33 H 1.09001 * 109.46534 * 240.00217 * 2 1 3 34 34 H 1.08999 * 109.47262 * 120.00739 * 2 1 3 35 35 H 1.09001 * 110.51203 * 24.21491 * 5 3 2 36 36 H 1.09003 * 110.46430 * 261.57294 * 5 3 2 37 37 H 1.09001 * 110.75845 * 203.71858 * 6 5 3 38 38 H 1.08995 * 110.91389 * 80.41606 * 6 5 3 39 39 H 1.09000 * 110.48603 * 279.26747 * 7 6 5 40 40 H 1.09000 * 110.49049 * 156.62007 * 7 6 5 41 41 H 0.97003 * 120.00362 * 359.97438 * 12 10 8 42 42 H 1.08995 * 109.47067 * 54.44576 * 13 12 10 43 43 H 1.09003 * 109.46721 * 294.44802 * 13 12 10 44 44 H 1.00903 * 111.00307 * 58.47484 * 15 14 13 45 45 H 1.08997 * 109.47028 * 60.80335 * 16 15 14 46 46 H 1.08997 * 109.47095 * 300.80376 * 16 15 14 47 47 H 0.96998 * 119.99752 * 359.97438 * 19 17 16 48 48 H 0.97006 * 120.00062 * 180.02562 * 23 22 20 49 49 H 1.08998 * 117.49912 * 214.99915 * 28 14 13 50 50 H 1.09002 * 117.49737 * 0.02562 * 28 14 13 51 51 H 1.09007 * 117.49986 * 359.97438 * 29 14 13 52 52 H 1.08996 * 117.49861 * 144.97127 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5906 1.9979 -0.8231 5 6 1.7035 2.1227 1.3443 6 6 2.9324 3.0198 1.6342 7 6 4.1149 2.1495 1.1411 8 6 3.5733 1.4594 -0.1279 9 1 3.8679 2.0223 -1.0136 10 6 4.0998 0.0500 -0.2144 11 8 4.3020 -0.5850 0.7990 12 7 4.3457 -0.5048 -1.4177 13 6 4.8570 -1.8752 -1.5018 14 6 4.9175 -2.3079 -2.9681 15 7 3.8275 -1.8138 -3.8200 16 6 2.5375 -2.3821 -3.4067 17 6 1.4488 -1.8690 -4.3137 18 8 1.7209 -1.1054 -5.2160 19 7 0.1728 -2.2586 -4.1223 20 6 -0.8174 -1.7922 -4.9478 21 1 -0.5751 -1.1123 -5.7511 22 6 -2.1320 -2.1984 -4.7539 23 7 -2.4269 -3.0253 -3.7762 24 14 -3.4803 -1.5688 -5.8834 25 1 -2.8913 -0.6576 -6.8972 26 1 -4.1290 -2.7163 -6.5673 27 1 -4.4922 -0.8327 -5.0838 28 6 6.3010 -2.4542 -3.6050 29 6 5.4759 -3.6996 -3.2715 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.5818 1.3769 2.1298 36 1 0.8025 2.7289 1.2496 37 1 3.0202 3.2215 2.7018 38 1 2.8763 3.9507 1.0701 39 1 4.3826 1.4079 1.8938 40 1 4.9738 2.7750 0.8981 41 1 4.1836 0.0029 -2.2282 42 1 4.1948 -2.5444 -0.9526 43 1 5.8565 -1.9172 -1.0690 44 1 3.7957 -0.8053 -3.8180 45 1 2.3232 -2.0877 -2.3793 46 1 2.5819 -3.4693 -3.4714 47 1 -0.0446 -2.8695 -3.4009 48 1 -3.3446 -3.3091 -3.6411 49 1 6.4023 -2.1840 -4.6561 50 1 7.1680 -2.2427 -2.9792 51 1 5.8005 -4.3069 -2.4265 52 1 5.0341 -4.2489 -4.1029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670850745.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:48 Heat of formation + Delta-G solvation = -66.094877 kcal Electronic energy + Delta-G solvation = -31073.715972 eV Core-core repulsion = 27072.917765 eV Total energy + Delta-G solvation = -4000.798207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.65001 -38.99865 -37.90000 -37.25707 -34.24168 -34.05050 -33.08280 -32.73012 -31.21155 -29.85995 -27.61486 -26.95826 -26.41188 -24.12617 -22.84893 -22.48058 -21.68158 -20.66849 -19.85148 -19.22490 -19.11649 -17.89989 -17.13169 -16.77824 -16.01086 -15.80940 -15.45616 -15.19730 -14.89489 -14.47834 -14.43765 -14.26757 -14.04816 -13.99230 -13.57948 -13.44605 -13.24176 -13.06380 -12.45269 -12.39790 -12.24127 -12.07745 -11.64359 -11.58805 -11.49867 -11.46476 -11.24792 -11.11678 -11.08914 -10.92330 -10.75412 -10.64556 -10.53199 -10.41365 -10.36675 -10.25184 -10.01361 -9.69047 -9.54359 -9.09592 -8.57112 -8.19630 -7.98722 -6.43754 -3.84596 2.61270 3.02152 3.14200 3.25301 3.31946 3.68425 3.86478 3.96505 4.21425 4.32777 4.45267 4.50931 4.54777 4.87879 4.91485 4.99302 5.12622 5.15296 5.20272 5.25489 5.26971 5.36513 5.45708 5.46512 5.50089 5.56756 5.60095 5.62324 5.65099 5.71920 5.76203 5.82435 5.85717 5.91602 5.94089 5.96853 6.04227 6.14382 6.17057 6.22074 6.24242 6.30395 6.34584 6.35993 6.54053 7.11008 7.36627 7.51284 7.53121 8.03558 8.17584 8.58196 9.15481 9.51537 10.02425 10.73712 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008601 B = 0.004124 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.561650 B = 6787.398487 C = 9278.220604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C -0.076 4.076 4 H 0.082 0.918 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.111 4.111 8 C -0.112 4.112 9 H 0.088 0.912 10 C 0.530 3.470 11 O -0.541 6.541 12 N -0.730 5.730 13 C 0.131 3.869 14 C 0.014 3.986 15 N -0.623 5.623 16 C 0.052 3.948 17 C 0.440 3.560 18 O -0.585 6.585 19 N -0.560 5.560 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.024 3.976 23 N -0.899 5.899 24 Si 0.927 3.073 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C -0.154 4.154 29 C -0.151 4.151 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.399 0.601 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.346 0.654 45 H 0.046 0.954 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.103 0.897 50 H 0.094 0.906 51 H 0.095 0.905 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.194 6.207 10.012 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.095 4.095 4 H 0.100 0.900 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.149 4.149 8 C -0.133 4.133 9 H 0.107 0.893 10 C 0.317 3.683 11 O -0.418 6.418 12 N -0.383 5.383 13 C 0.005 3.995 14 C -0.079 4.079 15 N -0.255 5.255 16 C -0.081 4.081 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.196 5.196 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.178 4.178 23 N -0.540 5.540 24 Si 0.754 3.246 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.191 4.191 29 C -0.189 4.189 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.234 0.766 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.168 0.832 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.122 0.878 50 H 0.112 0.888 51 H 0.114 0.886 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.419 5.716 9.668 17.499 hybrid contribution -1.214 0.478 0.191 1.319 sum 12.205 6.194 9.859 16.868 Atomic orbital electron populations 1.21725 0.94914 1.02304 1.01628 1.21820 0.96950 0.95270 1.02360 1.21758 0.91624 0.97323 0.98835 0.89981 1.22455 0.97780 0.98478 0.96674 1.22477 0.94679 0.98019 1.00903 1.22352 0.97706 0.98735 0.96110 1.22065 0.97302 0.93035 1.00930 0.89319 1.20439 0.76096 0.88819 0.82904 1.90668 1.52339 1.63860 1.34968 1.46105 1.67597 1.15801 1.08779 1.21321 0.99739 0.83020 0.95442 1.21691 0.93769 1.02196 0.90221 1.60004 1.01655 1.13285 1.50574 1.21674 0.88895 1.00627 0.96863 1.19757 0.83514 0.86302 0.87874 1.90525 1.82265 1.39251 1.34875 1.41843 1.05305 1.42347 1.30150 1.19728 0.86049 1.25803 1.11240 0.87915 1.25241 0.98443 0.96676 0.97399 1.69618 1.20500 1.33322 1.30579 0.85839 0.80327 0.78603 0.79824 1.19226 1.20739 1.20758 1.23159 0.92298 1.01435 1.02252 1.23048 1.02445 0.89943 1.03494 0.92379 0.93072 0.92331 0.91966 0.91277 0.91181 0.91414 0.91422 0.91467 0.89754 0.91592 0.76567 0.90873 0.91204 0.83246 0.93633 0.89542 0.77508 0.91915 0.87837 0.88756 0.88613 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.77 37.16 0.36 -1.74 16 2 C -0.13 -1.74 4.12 -26.73 -0.11 -1.85 16 3 C -0.08 -0.88 2.93 -89.45 -0.26 -1.15 16 4 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 5 C -0.12 -1.19 5.54 -25.02 -0.14 -1.33 16 6 C -0.12 -1.09 6.91 -24.74 -0.17 -1.27 16 7 C -0.11 -1.11 6.32 -25.07 -0.16 -1.27 16 8 C -0.11 -1.22 3.29 -90.65 -0.30 -1.52 16 9 H 0.09 0.83 8.13 -51.93 -0.42 0.41 16 10 C 0.53 6.86 4.66 -10.99 -0.05 6.81 16 11 O -0.54 -8.64 14.94 5.55 0.08 -8.55 16 12 N -0.73 -8.59 4.93 -60.29 -0.30 -8.88 16 13 C 0.13 1.54 5.10 -4.04 -0.02 1.52 16 14 C 0.01 0.17 2.06 -131.60 -0.27 -0.10 16 15 N -0.62 -9.38 6.04 -101.22 -0.61 -9.99 16 16 C 0.05 0.89 6.00 -4.97 -0.03 0.86 16 17 C 0.44 10.05 7.82 -10.98 -0.09 9.96 16 18 O -0.58 -15.29 15.80 5.55 0.09 -15.20 16 19 N -0.56 -13.85 5.29 -10.96 -0.06 -13.90 16 20 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 23 N -0.90 -24.09 13.05 55.50 0.72 -23.36 16 24 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C -0.15 -1.56 10.11 -26.69 -0.27 -1.83 16 29 C -0.15 -1.61 10.17 -26.70 -0.27 -1.88 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.63 7.52 -51.92 -0.39 0.24 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.94 6.18 -51.93 -0.32 0.62 16 34 H 0.07 1.02 7.02 -51.93 -0.36 0.66 16 35 H 0.07 0.77 7.76 -51.93 -0.40 0.36 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 1.00 6.92 -51.93 -0.36 0.64 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.40 4.42 6.71 -40.82 -0.27 4.14 16 42 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 43 H 0.07 0.78 7.92 -51.93 -0.41 0.37 16 44 H 0.35 5.26 6.71 -39.29 -0.26 4.99 16 45 H 0.05 0.75 6.87 -51.93 -0.36 0.39 16 46 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 48 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 49 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.09 0.80 8.06 -51.93 -0.42 0.38 16 51 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 52 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 411.75 15.07 6.20 6.20 Total: -1.00 -30.95 411.75 -9.80 -40.75 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -8.89 Total: 19.72 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.02 Total: -2.53 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.24 Total: -56.14 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.17 Total: -23.76 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.95 -9.80 -40.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670850745.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.345 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds