Wall clock time and date at job start Tue Mar 31 2020 19:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47076 * 2 1 4 4 H 1.08994 * 110.05840 * 306.48926 * 3 2 1 5 5 C 1.54368 * 110.04533 * 67.96841 * 3 2 1 6 6 C 1.54887 * 104.19840 * 142.90813 * 5 3 2 7 7 C 1.54888 * 102.74817 * 322.02898 * 6 5 3 8 8 C 1.53876 * 110.02858 * 185.07714 * 3 2 1 9 9 H 1.08997 * 110.03118 * 121.38318 * 8 3 2 10 10 C 1.50700 * 110.03600 * 0.02562 * 8 3 2 11 11 O 1.21290 * 119.99709 * 275.66499 * 10 8 3 12 12 N 1.34767 * 119.99961 * 95.66278 * 10 8 3 13 13 C 1.46506 * 120.00106 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47235 * 174.44938 * 13 12 10 15 15 N 1.46893 * 115.55012 * 323.52653 * 14 13 12 16 16 C 1.46901 * 111.00041 * 294.51791 * 15 14 13 17 17 C 1.50704 * 109.47215 * 180.80292 * 16 15 14 18 18 O 1.21294 * 119.99832 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99932 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99677 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99967 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99358 * 179.72356 * 20 19 17 23 23 N 1.31405 * 120.00497 * 0.27400 * 22 20 19 24 24 Si 1.86807 * 119.99625 * 180.27138 * 22 20 19 25 25 H 1.48497 * 109.46969 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47097 * 120.00100 * 24 22 20 27 27 H 1.48498 * 109.47154 * 240.00001 * 24 22 20 28 28 C 1.53003 * 117.49925 * 109.19811 * 14 13 12 29 29 C 1.52998 * 117.49768 * 177.85509 * 14 13 12 30 30 H 1.09000 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46830 * 299.99493 * 1 2 3 32 32 H 1.08995 * 109.47747 * 59.99203 * 1 2 3 33 33 H 1.09001 * 109.46534 * 240.00217 * 2 1 3 34 34 H 1.08999 * 109.47262 * 120.00739 * 2 1 3 35 35 H 1.09001 * 110.51203 * 24.21491 * 5 3 2 36 36 H 1.09003 * 110.46430 * 261.57294 * 5 3 2 37 37 H 1.09001 * 110.75845 * 203.71858 * 6 5 3 38 38 H 1.08995 * 110.91389 * 80.41606 * 6 5 3 39 39 H 1.09000 * 110.48603 * 279.26747 * 7 6 5 40 40 H 1.09000 * 110.49049 * 156.62007 * 7 6 5 41 41 H 0.97003 * 120.00362 * 359.97438 * 12 10 8 42 42 H 1.08995 * 109.47067 * 54.44576 * 13 12 10 43 43 H 1.09003 * 109.46721 * 294.44802 * 13 12 10 44 44 H 1.00903 * 111.00307 * 58.47484 * 15 14 13 45 45 H 1.08997 * 109.47028 * 60.80335 * 16 15 14 46 46 H 1.08997 * 109.47095 * 300.80376 * 16 15 14 47 47 H 0.96998 * 119.99752 * 359.97438 * 19 17 16 48 48 H 0.97006 * 120.00062 * 180.02562 * 23 22 20 49 49 H 1.08998 * 117.49912 * 214.99915 * 28 14 13 50 50 H 1.09002 * 117.49737 * 0.02562 * 28 14 13 51 51 H 1.09007 * 117.49986 * 359.97438 * 29 14 13 52 52 H 1.08996 * 117.49861 * 144.97127 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5906 1.9979 -0.8231 5 6 1.7035 2.1227 1.3443 6 6 2.9324 3.0198 1.6342 7 6 4.1149 2.1495 1.1411 8 6 3.5733 1.4594 -0.1279 9 1 3.8679 2.0223 -1.0136 10 6 4.0998 0.0500 -0.2144 11 8 4.3020 -0.5850 0.7990 12 7 4.3457 -0.5048 -1.4177 13 6 4.8570 -1.8752 -1.5018 14 6 4.9175 -2.3079 -2.9681 15 7 3.8275 -1.8138 -3.8200 16 6 2.5375 -2.3821 -3.4067 17 6 1.4488 -1.8690 -4.3137 18 8 1.7209 -1.1054 -5.2160 19 7 0.1728 -2.2586 -4.1223 20 6 -0.8174 -1.7922 -4.9478 21 1 -0.5751 -1.1123 -5.7511 22 6 -2.1320 -2.1984 -4.7539 23 7 -2.4269 -3.0253 -3.7762 24 14 -3.4803 -1.5688 -5.8834 25 1 -2.8913 -0.6576 -6.8972 26 1 -4.1290 -2.7163 -6.5673 27 1 -4.4922 -0.8327 -5.0838 28 6 6.3010 -2.4542 -3.6050 29 6 5.4759 -3.6996 -3.2715 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.5818 1.3769 2.1298 36 1 0.8025 2.7289 1.2496 37 1 3.0202 3.2215 2.7018 38 1 2.8763 3.9507 1.0701 39 1 4.3826 1.4079 1.8938 40 1 4.9738 2.7750 0.8981 41 1 4.1836 0.0029 -2.2282 42 1 4.1948 -2.5444 -0.9526 43 1 5.8565 -1.9172 -1.0690 44 1 3.7957 -0.8053 -3.8180 45 1 2.3232 -2.0877 -2.3793 46 1 2.5819 -3.4693 -3.4714 47 1 -0.0446 -2.8695 -3.4009 48 1 -3.3446 -3.3091 -3.6411 49 1 6.4023 -2.1840 -4.6561 50 1 7.1680 -2.2427 -2.9792 51 1 5.8005 -4.3069 -2.4265 52 1 5.0341 -4.2489 -4.1029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670850745.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:46 Heat of formation + Delta-G solvation = -86.764764 kcal Electronic energy + Delta-G solvation = -31074.612286 eV Core-core repulsion = 27072.917765 eV Total energy + Delta-G solvation = -4001.694521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.64734 -40.35505 -39.37730 -38.26719 -36.00956 -35.24624 -34.13070 -34.06762 -33.20885 -30.73790 -28.55755 -28.38647 -27.59781 -25.91684 -23.89291 -23.37120 -22.61869 -21.50737 -21.16330 -20.75291 -20.11991 -19.88760 -18.23965 -17.84164 -17.40308 -16.83310 -16.77627 -16.52776 -16.23022 -15.99263 -15.71933 -15.47297 -15.20779 -15.13420 -15.02732 -14.46516 -14.36038 -14.14213 -14.02031 -13.67231 -13.50684 -13.37813 -13.08113 -13.00957 -12.80584 -12.51450 -12.40041 -12.29909 -12.27708 -12.12245 -11.91312 -11.85149 -11.63587 -11.52004 -11.50409 -11.48733 -11.41781 -10.99521 -10.71743 -10.36029 -10.10183 -10.01568 -9.53218 -8.46315 -5.94846 1.35660 1.41608 1.55216 1.59398 2.02366 2.06531 2.27976 2.71139 2.87534 3.21019 3.40692 3.45079 3.58217 3.59370 3.64759 3.98369 4.02445 4.10388 4.14397 4.24291 4.31937 4.35658 4.38255 4.47792 4.50622 4.55937 4.60721 4.64766 4.65363 4.70406 4.72119 4.76923 4.82456 4.82634 5.01006 5.07457 5.09014 5.13583 5.19106 5.22983 5.28194 5.32794 5.35222 5.40031 5.41408 5.50567 5.82587 6.05031 6.26872 6.44105 6.58464 7.12330 7.17478 7.54776 8.09044 8.71016 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008601 B = 0.004124 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.561650 B = 6787.398487 C = 9278.220604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.076 4.076 4 H 0.084 0.916 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.109 4.109 8 C -0.111 4.111 9 H 0.109 0.891 10 C 0.528 3.472 11 O -0.574 6.574 12 N -0.724 5.724 13 C 0.138 3.862 14 C 0.002 3.998 15 N -0.630 5.630 16 C 0.072 3.928 17 C 0.441 3.559 18 O -0.618 6.618 19 N -0.569 5.569 20 C -0.329 4.329 21 H 0.080 0.920 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.989 3.011 25 H -0.272 1.272 26 H -0.273 1.273 27 H -0.271 1.271 28 C -0.135 4.135 29 C -0.149 4.149 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.403 0.597 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.345 0.655 45 H 0.054 0.946 46 H 0.096 0.904 47 H 0.393 0.607 48 H 0.276 0.724 49 H 0.098 0.902 50 H 0.118 0.882 51 H 0.115 0.885 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.062 7.139 10.338 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.095 4.095 4 H 0.102 0.898 5 C -0.154 4.154 6 C -0.153 4.153 7 C -0.147 4.147 8 C -0.133 4.133 9 H 0.127 0.873 10 C 0.317 3.683 11 O -0.454 6.454 12 N -0.377 5.377 13 C 0.012 3.988 14 C -0.090 4.090 15 N -0.262 5.262 16 C -0.061 4.061 17 C 0.228 3.772 18 O -0.505 6.505 19 N -0.206 5.206 20 C -0.459 4.459 21 H 0.098 0.902 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.813 3.187 25 H -0.196 1.196 26 H -0.198 1.198 27 H -0.197 1.197 28 C -0.172 4.172 29 C -0.187 4.187 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.239 0.761 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.165 0.835 45 H 0.072 0.928 46 H 0.114 0.886 47 H 0.227 0.773 48 H 0.086 0.914 49 H 0.116 0.884 50 H 0.136 0.864 51 H 0.133 0.867 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.301 6.634 9.994 18.666 hybrid contribution -1.428 0.147 0.078 1.438 sum 12.873 6.781 10.072 17.696 Atomic orbital electron populations 1.21680 0.95387 1.01233 1.01839 1.21713 0.96403 0.96747 1.00773 1.21762 0.92165 0.95697 0.99881 0.89791 1.22453 0.99049 0.98542 0.95352 1.22470 0.93055 0.97975 1.01831 1.22337 0.98844 0.98523 0.94967 1.22145 0.96625 0.92050 1.02457 0.87323 1.20811 0.75504 0.89458 0.82568 1.90652 1.53865 1.64836 1.36049 1.46099 1.67023 1.15847 1.08717 1.21251 0.99853 0.82618 0.95111 1.21711 0.93785 1.03624 0.89900 1.59982 1.01241 1.13217 1.51761 1.21414 0.88219 1.00883 0.95551 1.20672 0.83910 0.84960 0.87673 1.90494 1.82879 1.40575 1.36530 1.41902 1.05808 1.42762 1.30127 1.19674 0.87474 1.26839 1.11889 0.90175 1.25988 0.99925 0.96497 0.98578 1.69684 1.21275 1.33660 1.31380 0.84926 0.77582 0.78209 0.77992 1.19623 1.19804 1.19664 1.23225 0.91710 1.00115 1.02196 1.23136 1.02040 0.89704 1.03786 0.94093 0.91210 0.93634 0.93725 0.92580 0.92244 0.90449 0.90395 0.89892 0.91836 0.89793 0.76070 0.92554 0.90066 0.83458 0.92835 0.88558 0.77320 0.91404 0.88358 0.86412 0.86661 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.77 71.98 0.70 -3.48 16 2 C -0.12 -3.32 4.12 30.60 0.13 -3.19 16 3 C -0.08 -1.70 2.93 -10.03 -0.03 -1.73 16 4 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 5 C -0.12 -2.22 5.54 31.70 0.18 -2.05 16 6 C -0.12 -1.79 6.91 31.88 0.22 -1.57 16 7 C -0.11 -1.99 6.32 31.67 0.20 -1.79 16 8 C -0.11 -2.29 3.29 -10.81 -0.04 -2.33 16 9 H 0.11 1.80 8.13 -2.39 -0.02 1.78 16 10 C 0.53 13.42 4.66 87.66 0.41 13.83 16 11 O -0.57 -18.38 14.94 -3.06 -0.05 -18.42 16 12 N -0.72 -16.54 4.93 -463.05 -2.28 -18.82 16 13 C 0.14 3.10 5.10 86.38 0.44 3.54 16 14 C 0.00 0.05 2.06 3.53 0.01 0.06 16 15 N -0.63 -18.64 6.04 -474.16 -2.86 -21.50 16 16 C 0.07 2.47 6.00 85.56 0.51 2.98 16 17 C 0.44 20.53 7.82 87.66 0.69 21.22 16 18 O -0.62 -33.06 15.80 -3.07 -0.05 -33.11 16 19 N -0.57 -28.91 5.29 -306.98 -1.62 -30.53 16 20 C -0.33 -18.42 9.68 84.04 0.81 -17.61 16 21 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 22 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 23 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 24 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 28 C -0.14 -2.41 10.11 30.62 0.31 -2.10 16 29 C -0.15 -2.89 10.17 30.62 0.31 -2.58 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.73 7.52 -2.38 -0.02 1.71 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.04 1.38 6.18 -2.39 -0.01 1.36 16 34 H 0.06 1.71 7.02 -2.39 -0.02 1.69 16 35 H 0.06 1.26 7.76 -2.39 -0.02 1.24 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.46 6.92 -2.39 -0.02 1.44 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.40 8.60 6.71 -92.71 -0.62 7.98 16 42 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 43 H 0.08 1.67 7.92 -2.39 -0.02 1.65 16 44 H 0.34 10.34 6.71 -89.69 -0.60 9.73 16 45 H 0.05 1.78 6.87 -2.39 -0.02 1.76 16 46 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 47 H 0.39 19.42 7.90 -92.71 -0.73 18.68 16 48 H 0.28 13.94 8.31 -92.70 -0.77 13.17 16 49 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.12 1.59 8.06 -2.39 -0.02 1.57 16 51 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 52 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -67.68 411.75 -0.26 -67.94 By element: Atomic # 1 Polarization: 56.85 SS G_CDS: -1.02 Total: 55.83 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 5.32 Total: 3.13 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -6.49 Total: -119.97 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -0.09 Total: -51.53 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -67.68 -0.26 -67.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670850745.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.825 kcal (2) G-P(sol) polarization free energy of solvation -67.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds