Wall clock time and date at job start Tue Mar 31 2020 19:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47358 * 2 1 4 4 H 1.09001 * 110.81126 * 303.11944 * 3 2 1 5 5 C 1.54886 * 110.75709 * 66.45047 * 3 2 1 6 6 C 1.54270 * 104.19500 * 156.26244 * 5 3 2 7 7 C 1.53877 * 106.59495 * 336.38856 * 6 5 3 8 8 C 1.54266 * 106.59979 * 0.02562 * 7 6 5 9 9 H 1.09002 * 110.48600 * 264.79403 * 8 7 6 10 10 C 1.50699 * 110.48518 * 142.28802 * 8 7 6 11 11 O 1.21286 * 120.00044 * 241.45128 * 10 8 7 12 12 N 1.34775 * 120.00258 * 61.45286 * 10 8 7 13 13 C 1.46500 * 120.00233 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47471 * 175.58113 * 13 12 10 15 15 N 1.46899 * 115.54665 * 279.59901 * 14 13 12 16 16 C 1.46907 * 110.99812 * 295.72778 * 15 14 13 17 17 C 1.50697 * 109.46868 * 185.28191 * 16 15 14 18 18 O 1.21293 * 120.00449 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99758 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00375 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99407 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00545 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99686 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00225 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47113 * 60.00338 * 24 22 20 26 26 H 1.48504 * 109.46999 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47425 * 300.00131 * 24 22 20 28 28 C 1.52994 * 117.50080 * 133.92414 * 14 13 12 29 29 C 1.53001 * 117.49941 * 65.26260 * 14 13 12 30 30 H 1.08991 * 109.47170 * 60.00042 * 1 2 3 31 31 H 1.08997 * 109.47013 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46987 * 300.00099 * 1 2 3 33 33 H 1.08995 * 109.47224 * 239.99458 * 2 1 3 34 34 H 1.09004 * 109.46980 * 119.99616 * 2 1 3 35 35 H 1.08999 * 110.48545 * 37.58196 * 5 3 2 36 36 H 1.08999 * 110.49143 * 274.93594 * 5 3 2 37 37 H 1.08995 * 110.03592 * 95.67274 * 6 5 3 38 38 H 1.09003 * 110.02865 * 217.10758 * 6 5 3 39 39 H 1.09000 * 110.03105 * 119.28981 * 7 6 5 40 40 H 1.08996 * 110.03481 * 240.66616 * 7 6 5 41 41 H 0.97003 * 119.99656 * 359.97438 * 12 10 8 42 42 H 1.09004 * 109.46989 * 295.57925 * 13 12 10 43 43 H 1.08993 * 109.47486 * 55.57331 * 13 12 10 44 44 H 1.00892 * 111.00796 * 59.68335 * 15 14 13 45 45 H 1.09000 * 109.47067 * 305.28178 * 16 15 14 46 46 H 1.09003 * 109.46897 * 65.28620 * 16 15 14 47 47 H 0.97004 * 119.99969 * 0.02562 * 19 17 16 48 48 H 0.96997 * 119.99952 * 179.97438 * 23 22 20 49 49 H 1.08996 * 117.50445 * 0.02562 * 28 14 13 50 50 H 1.09002 * 117.50068 * 145.02068 * 28 14 13 51 51 H 1.09003 * 117.49619 * 214.98458 * 29 14 13 52 52 H 1.08998 * 117.49925 * 359.97438 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6443 1.9932 -0.8534 5 6 1.6775 2.1529 1.3277 6 6 2.7189 3.2848 1.4477 7 6 3.9339 2.8551 0.6070 8 6 3.5883 1.4774 0.0050 9 1 3.9874 0.6775 0.6287 10 6 4.1235 1.3663 -1.3994 11 8 3.3609 1.1990 -2.3275 12 7 5.4496 1.4527 -1.6240 13 6 5.9698 1.3453 -2.9893 14 6 7.4808 1.5854 -2.9798 15 7 7.8983 2.9931 -2.9346 16 6 7.4786 3.7059 -4.1486 17 6 8.0340 5.1066 -4.1259 18 8 8.7130 5.4748 -3.1907 19 7 7.7770 5.9500 -5.1454 20 6 8.2818 7.2244 -5.1246 21 1 8.8857 7.5525 -4.2915 22 6 8.0165 8.0941 -6.1753 23 7 7.2812 7.6950 -7.1888 24 14 8.7048 9.8303 -6.1473 25 1 10.1878 9.7741 -6.0940 26 1 8.2801 10.5511 -7.3743 27 1 8.1934 10.5464 -4.9511 28 6 8.3555 0.6142 -3.7752 29 6 8.3535 0.5657 -2.2452 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.7662 1.4624 2.1664 36 1 0.6699 2.5655 1.2769 37 1 2.3057 4.2152 1.0584 38 1 3.0123 3.4131 2.4897 39 1 4.1104 3.5770 -0.1903 40 1 4.8172 2.7758 1.2407 41 1 6.0594 1.5869 -0.8817 42 1 5.7627 0.3488 -3.3796 43 1 5.4874 2.0905 -3.6217 44 1 7.5442 3.4489 -2.1071 45 1 7.8541 3.1803 -5.0266 46 1 6.3901 3.7472 -4.1877 47 1 7.2343 5.6554 -5.8935 48 1 7.0957 8.3022 -7.9221 49 1 7.8545 -0.1955 -4.3056 50 1 9.2410 1.0197 -4.2647 51 1 9.2377 0.9394 -1.7287 52 1 7.8512 -0.2759 -1.7684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670850746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:50 Heat of formation + Delta-G solvation = -96.640411 kcal Electronic energy + Delta-G solvation = -29568.650427 eV Core-core repulsion = 25566.527666 eV Total energy + Delta-G solvation = -4002.122761 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.37773 -40.33997 -39.38565 -38.37896 -36.04242 -35.24962 -34.13589 -33.99508 -33.23778 -30.70437 -28.52273 -28.40480 -27.57234 -25.92622 -23.98777 -23.36061 -22.41880 -21.20573 -20.91940 -20.84548 -20.41167 -19.91921 -18.50310 -17.83594 -17.17620 -16.91126 -16.70462 -16.48222 -16.26661 -15.95882 -15.75327 -15.39439 -15.27784 -15.10357 -14.99122 -14.36939 -14.23522 -14.08316 -13.89136 -13.79268 -13.56668 -13.43267 -13.08098 -12.94415 -12.79626 -12.77533 -12.45755 -12.30583 -12.23807 -12.14231 -11.96071 -11.62314 -11.56311 -11.52463 -11.49077 -11.37345 -11.29361 -11.14879 -10.63944 -10.38907 -10.14331 -10.04823 -9.49907 -8.48678 -5.98164 1.38189 1.39896 1.51351 1.61540 2.01171 2.08055 2.26450 2.69385 2.95005 3.17940 3.41748 3.43192 3.56588 3.61649 3.72532 3.94944 4.07550 4.13696 4.22536 4.25135 4.30244 4.33952 4.45395 4.48174 4.50325 4.56285 4.60699 4.64113 4.67732 4.72630 4.80204 4.81586 4.82115 4.96076 5.02631 5.07642 5.11988 5.20441 5.23705 5.28743 5.32745 5.37484 5.38128 5.40629 5.45919 5.57093 5.82691 6.03880 6.31242 6.52204 6.56348 7.09266 7.22723 7.52283 8.06926 8.68626 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011318 B = 0.002466 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.304488 B =11351.599169 C =12663.370158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.074 4.074 4 H 0.054 0.946 5 C -0.113 4.113 6 C -0.124 4.124 7 C -0.115 4.115 8 C -0.104 4.104 9 H 0.128 0.872 10 C 0.514 3.486 11 O -0.583 6.583 12 N -0.714 5.714 13 C 0.135 3.865 14 C 0.002 3.998 15 N -0.633 5.633 16 C 0.068 3.932 17 C 0.439 3.561 18 O -0.619 6.619 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.995 3.005 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.271 1.271 28 C -0.148 4.148 29 C -0.130 4.130 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.094 0.906 41 H 0.413 0.587 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.346 0.654 45 H 0.102 0.898 46 H 0.054 0.946 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.115 0.885 50 H 0.093 0.907 51 H 0.101 0.899 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.250 -18.770 16.521 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.093 4.093 4 H 0.072 0.928 5 C -0.150 4.150 6 C -0.162 4.162 7 C -0.153 4.153 8 C -0.125 4.125 9 H 0.146 0.854 10 C 0.302 3.698 11 O -0.463 6.463 12 N -0.366 5.366 13 C 0.009 3.991 14 C -0.090 4.090 15 N -0.263 5.263 16 C -0.064 4.064 17 C 0.227 3.773 18 O -0.506 6.506 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.186 4.186 29 C -0.168 4.168 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.112 0.888 41 H 0.249 0.751 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.166 0.834 45 H 0.120 0.880 46 H 0.072 0.928 47 H 0.228 0.772 48 H 0.087 0.913 49 H 0.133 0.867 50 H 0.111 0.889 51 H 0.119 0.881 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.746 -18.645 16.055 26.113 hybrid contribution -0.659 1.269 -0.694 1.589 sum -9.405 -17.376 15.360 25.026 Atomic orbital electron populations 1.21745 0.95338 1.01875 1.01708 1.21461 0.96473 0.95217 1.01665 1.21969 0.92144 0.96926 0.98240 0.92791 1.22425 0.98877 0.97184 0.96515 1.22129 0.94951 0.98417 1.00692 1.22140 1.00168 0.93831 0.99205 1.22308 0.97518 1.01004 0.91703 0.85431 1.21188 0.81879 0.74665 0.92070 1.90686 1.58087 1.50671 1.46862 1.45956 1.07380 1.73617 1.09687 1.21224 0.92148 1.01732 0.83993 1.21666 0.89454 0.86689 1.11188 1.59941 1.62651 1.00311 1.03413 1.21443 0.97985 0.91174 0.95795 1.20767 0.84763 0.88188 0.83605 1.90482 1.44129 1.78834 1.37116 1.41948 1.47028 1.11816 1.20283 1.19644 1.30974 0.89153 1.06605 0.90128 1.26092 0.96916 1.03965 0.94445 1.69678 1.38361 1.38622 1.09597 0.84966 0.78613 0.76676 0.77958 1.19515 1.19511 1.19599 1.23162 1.00817 0.99443 0.95213 1.23133 1.00750 0.98285 0.94603 0.94189 0.92176 0.91497 0.93834 0.90257 0.89506 0.91291 0.92703 0.89717 0.93675 0.88760 0.75055 0.90442 0.93405 0.83443 0.87979 0.92822 0.77157 0.91267 0.86670 0.88878 0.88063 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.76 71.98 0.70 -1.48 16 2 C -0.11 -1.77 5.43 30.59 0.17 -1.60 16 3 C -0.07 -1.31 1.94 -9.52 -0.02 -1.32 16 4 H 0.05 1.33 7.52 -2.39 -0.02 1.31 16 5 C -0.11 -1.45 5.47 31.67 0.17 -1.28 16 6 C -0.12 -1.70 6.80 31.32 0.21 -1.49 16 7 C -0.12 -1.77 6.30 31.32 0.20 -1.57 16 8 C -0.10 -1.70 2.70 -10.48 -0.03 -1.73 16 9 H 0.13 1.40 8.05 -2.39 -0.02 1.38 16 10 C 0.51 11.99 7.01 87.66 0.61 12.61 16 11 O -0.58 -18.89 15.57 -3.05 -0.05 -18.94 16 12 N -0.71 -14.06 5.46 -463.06 -2.53 -16.59 16 13 C 0.14 3.06 5.67 86.38 0.49 3.55 16 14 C 0.00 0.05 1.72 3.53 0.01 0.06 16 15 N -0.63 -19.35 6.15 -474.14 -2.92 -22.26 16 16 C 0.07 2.44 5.88 85.55 0.50 2.94 16 17 C 0.44 21.35 7.83 87.66 0.69 22.04 16 18 O -0.62 -34.45 15.89 -3.07 -0.05 -34.50 16 19 N -0.57 -30.26 5.29 -306.98 -1.62 -31.89 16 20 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 21 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 22 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 23 N -0.92 -50.89 13.05 21.66 0.28 -50.61 16 24 Si 0.99 43.47 29.55 68.60 2.03 45.50 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 C -0.15 -2.84 10.10 30.62 0.31 -2.53 16 29 C -0.13 -2.16 10.07 30.62 0.31 -1.85 16 30 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.80 7.41 -2.38 -0.02 0.78 16 33 H 0.04 0.89 7.95 -2.39 -0.02 0.87 16 34 H 0.08 0.93 8.10 -2.39 -0.02 0.91 16 35 H 0.09 0.81 8.01 -2.39 -0.02 0.79 16 36 H 0.07 0.89 8.02 -2.39 -0.02 0.87 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.04 0.92 7.83 -2.39 -0.02 0.90 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.41 6.16 8.39 -92.71 -0.78 5.38 16 42 H 0.08 1.67 7.95 -2.38 -0.02 1.65 16 43 H 0.05 1.36 6.58 -2.39 -0.02 1.35 16 44 H 0.35 10.94 8.71 -89.70 -0.78 10.16 16 45 H 0.10 3.37 8.12 -2.39 -0.02 3.35 16 46 H 0.05 1.84 6.82 -2.39 -0.02 1.82 16 47 H 0.39 20.03 7.90 -92.71 -0.73 19.30 16 48 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 49 H 0.12 1.76 8.08 -2.39 -0.02 1.74 16 50 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 51 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -72.95 420.18 -0.60 -73.56 By element: Atomic # 1 Polarization: 49.54 SS G_CDS: -1.36 Total: 48.18 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 5.60 Total: 7.54 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -6.78 Total: -121.34 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -0.10 Total: -53.44 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -72.95 -0.60 -73.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670850746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.083 kcal (2) G-P(sol) polarization free energy of solvation -72.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds