Wall clock time and date at job start Tue Mar 31 2020 19:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50696 * 120.00028 * 2 1 4 4 C 1.32991 * 119.99787 * 180.02562 * 2 1 3 5 5 C 1.47104 * 120.00436 * 4.21484 * 4 2 1 6 6 O 1.21616 * 119.99316 * 354.01806 * 5 4 2 7 7 N 1.34775 * 120.00320 * 174.02420 * 5 4 2 8 8 C 1.46501 * 120.00025 * 185.07705 * 7 5 4 9 9 H 1.08997 * 109.46825 * 354.98612 * 8 7 5 10 10 C 1.52999 * 109.46807 * 114.98198 * 8 7 5 11 11 N 1.46900 * 109.47666 * 304.99865 * 10 8 7 12 12 C 1.46890 * 111.00370 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47202 * 179.97438 * 12 11 10 14 14 O 1.21289 * 119.99860 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00049 * 180.02562 * 13 12 11 16 16 C 1.37094 * 120.00131 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00350 * 359.97438 * 16 15 13 18 18 C 1.38953 * 120.00153 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00185 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99832 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47343 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47266 * 119.99989 * 20 18 16 23 23 H 1.48508 * 109.46824 * 239.99720 * 20 18 16 24 24 C 1.52995 * 109.47162 * 234.98094 * 8 7 5 25 25 C 1.54261 * 110.03300 * 181.60936 * 24 8 7 26 26 C 1.54895 * 104.19543 * 217.10870 * 25 24 8 27 27 C 1.54884 * 102.74845 * 37.93968 * 26 25 24 28 28 C 1.53883 * 110.03174 * 64.44096 * 24 8 7 29 29 H 1.08999 * 109.47235 * 243.52884 * 1 2 3 30 30 H 1.08996 * 109.47280 * 3.52794 * 1 2 3 31 31 H 1.09000 * 109.47567 * 123.52567 * 1 2 3 32 32 H 1.08993 * 109.47888 * 240.00347 * 3 2 1 33 33 H 1.08998 * 109.47200 * 0.02562 * 3 2 1 34 34 H 1.09004 * 109.46857 * 119.99784 * 3 2 1 35 35 H 1.07998 * 119.99933 * 184.21288 * 4 2 1 36 36 H 0.97004 * 119.99649 * 5.07799 * 7 5 4 37 37 H 1.09001 * 109.46916 * 184.99909 * 10 8 7 38 38 H 1.09002 * 109.47259 * 65.00084 * 10 8 7 39 39 H 1.00900 * 110.99618 * 56.04225 * 11 10 8 40 40 H 1.08998 * 109.47570 * 300.00233 * 12 11 10 41 41 H 1.09005 * 109.47123 * 60.00284 * 12 11 10 42 42 H 0.97001 * 120.00182 * 359.97438 * 15 13 12 43 43 H 0.96998 * 120.00389 * 179.97438 * 19 18 16 44 44 H 1.09004 * 110.01924 * 303.05406 * 24 8 7 45 45 H 1.08997 * 110.48642 * 335.78351 * 25 24 8 46 46 H 1.08998 * 110.48547 * 98.42978 * 25 24 8 47 47 H 1.09003 * 110.75138 * 279.62503 * 26 25 24 48 48 H 1.09003 * 110.91493 * 156.33306 * 26 25 24 49 49 H 1.08999 * 110.48594 * 203.37977 * 27 26 25 50 50 H 1.09009 * 110.59747 * 80.79770 * 27 26 25 51 51 H 1.08995 * 110.03375 * 238.56554 * 28 24 8 52 52 H 1.09001 * 110.02696 * 0.02562 * 28 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4394 -2.4240 -0.0947 6 8 0.2237 -2.4294 -0.0624 7 7 2.1155 -3.5835 -0.2166 8 6 1.3873 -4.8379 -0.4221 9 1 0.3154 -4.6501 -0.3601 10 6 1.7268 -5.4045 -1.8022 11 7 1.4496 -4.3914 -2.8293 12 6 1.7640 -4.9015 -4.1704 13 6 1.4671 -3.8372 -5.1951 14 8 1.0364 -2.7595 -4.8427 15 7 1.6800 -4.0828 -6.5030 16 6 1.4104 -3.1144 -7.4352 17 1 1.0269 -2.1547 -7.1215 18 6 1.6305 -3.3675 -8.7836 19 7 2.0976 -4.5349 -9.1654 20 14 1.2624 -2.0481 -10.0538 21 1 0.7490 -0.8333 -9.3712 22 1 2.5055 -1.7126 -10.7936 23 1 0.2395 -2.5497 -11.0064 24 6 1.7919 -5.8450 0.6562 25 6 1.0624 -7.1850 0.4282 26 6 0.7421 -7.6910 1.8567 27 6 0.3765 -6.3865 2.6074 28 6 1.3558 -5.3373 2.0419 29 1 -0.3634 -0.4581 0.9199 30 1 -0.3633 1.0257 -0.0632 31 1 -0.3634 -0.5676 -0.8567 32 1 2.8871 1.3630 -0.8899 33 1 1.5522 2.1335 0.0005 34 1 2.8871 1.3628 0.8900 35 1 3.2497 -1.1531 0.0682 36 1 3.0843 -3.5873 -0.1683 37 1 1.1189 -6.2892 -1.9913 38 1 2.7822 -5.6751 -1.8343 39 1 1.9526 -3.5375 -2.6397 40 1 2.8195 -5.1691 -4.2192 41 1 1.1560 -5.7827 -4.3757 42 1 2.0248 -4.9446 -6.7848 43 1 2.2509 -4.7118 -10.1067 44 1 2.8709 -5.9986 0.6374 45 1 0.1430 -7.0277 -0.1358 46 1 1.7127 -7.8901 -0.0894 47 1 1.6170 -8.1623 2.3047 48 1 -0.1026 -8.3799 1.8453 49 1 0.5263 -6.5089 3.6801 50 1 -0.6538 -6.0991 2.3974 51 1 2.2230 -5.2454 2.6957 52 1 0.8556 -4.3736 1.9459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671513466.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:11 Heat of formation + Delta-G solvation = -102.096011 kcal Electronic energy + Delta-G solvation = -29863.029271 eV Core-core repulsion = 25860.669938 eV Total energy + Delta-G solvation = -4002.359333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.18350 -40.13622 -39.33670 -37.14240 -36.28575 -35.90283 -34.87412 -33.27940 -31.80906 -29.63992 -29.00923 -28.74119 -28.53689 -26.93505 -25.22249 -23.34766 -21.86128 -21.35249 -21.16232 -20.87588 -19.94314 -19.39842 -18.10198 -17.78013 -17.28392 -16.83555 -16.52804 -16.38465 -16.18373 -15.86879 -15.60606 -15.34053 -15.06785 -15.04013 -14.83107 -14.41303 -14.30872 -14.16009 -13.74702 -13.48386 -13.38108 -13.26566 -13.23502 -13.01030 -12.91363 -12.67205 -12.53708 -12.42946 -12.37607 -12.15501 -12.11958 -11.93801 -11.83283 -11.75482 -11.53433 -11.43694 -11.34210 -10.50381 -10.41456 -10.16187 -10.03125 -9.74510 -9.27488 -8.48447 -5.97140 0.49049 1.34881 1.40078 1.54516 2.03084 2.27353 2.28809 2.49650 2.88999 3.18540 3.45531 3.71093 3.75588 3.86131 3.90248 3.94838 4.12976 4.24585 4.28259 4.34091 4.45713 4.49563 4.54752 4.59439 4.60671 4.69204 4.70164 4.72601 4.73027 4.79955 4.84390 4.87960 4.90587 4.99797 5.04900 5.10040 5.12611 5.17971 5.28104 5.33827 5.39269 5.48550 5.52501 5.55865 5.65054 5.70203 5.88382 6.10815 6.37122 6.58838 6.72004 7.11211 7.44657 7.54130 8.10376 8.69251 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009532 B = 0.002929 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.709004 B = 9556.821034 C =12031.722466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.037 4.037 3 C -0.123 4.123 4 C -0.249 4.249 5 C 0.541 3.459 6 O -0.575 6.575 7 N -0.713 5.713 8 C 0.157 3.843 9 H 0.071 0.929 10 C 0.051 3.949 11 N -0.685 5.685 12 C 0.066 3.934 13 C 0.435 3.565 14 O -0.624 6.624 15 N -0.572 5.572 16 C -0.333 4.333 17 H 0.075 0.925 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.992 3.008 21 H -0.275 1.275 22 H -0.268 1.268 23 H -0.270 1.270 24 C -0.088 4.088 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.127 4.127 28 C -0.113 4.113 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.153 0.847 36 H 0.410 0.590 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.340 0.660 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.094 0.906 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.049 0.951 51 H 0.073 0.927 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.928 -3.079 23.897 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.039 4.039 3 C -0.179 4.179 4 C -0.270 4.270 5 C 0.333 3.667 6 O -0.457 6.457 7 N -0.364 5.364 8 C 0.051 3.949 9 H 0.090 0.910 10 C -0.079 4.079 11 N -0.318 5.318 12 C -0.067 4.067 13 C 0.223 3.777 14 O -0.511 6.511 15 N -0.209 5.209 16 C -0.463 4.463 17 H 0.093 0.907 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.816 3.184 21 H -0.200 1.200 22 H -0.193 1.193 23 H -0.196 1.196 24 C -0.108 4.108 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.165 4.165 28 C -0.151 4.151 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.170 0.830 36 H 0.246 0.754 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.158 0.842 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.231 0.769 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.068 0.932 51 H 0.091 0.909 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.172 -2.613 23.895 24.397 hybrid contribution 1.061 0.192 -1.121 1.555 sum 5.233 -2.421 22.774 23.493 Atomic orbital electron populations 1.20991 0.92304 1.01449 1.02332 1.22856 0.96324 0.96105 0.88590 1.21061 1.00461 0.92520 1.03849 1.22525 1.01268 0.91234 1.11964 1.18922 0.87116 0.85389 0.75302 1.90763 1.15668 1.87637 1.51624 1.45695 1.10611 1.06232 1.73860 1.21074 0.97517 0.83284 0.93015 0.91026 1.22479 1.00372 0.94780 0.90232 1.59955 1.64307 1.07130 1.00377 1.21541 1.00837 0.96033 0.88243 1.20930 0.83049 0.89890 0.83828 1.90507 1.51367 1.28325 1.80870 1.41916 1.58014 1.16007 1.04989 1.19671 1.42617 0.96422 0.87598 0.90659 1.26028 0.96352 0.99592 0.99189 1.69670 1.45080 1.22983 1.18295 0.84890 0.78405 0.77654 0.77490 1.20001 1.19265 1.19557 1.22051 1.01415 0.94030 0.93306 1.22440 1.00234 0.95419 0.97671 1.22474 1.01722 0.96635 0.94833 1.22370 0.98604 0.95426 1.00077 1.22093 0.99226 0.98035 0.95734 0.91212 0.91218 0.92960 0.90159 0.90447 0.88577 0.82986 0.75390 0.89207 0.92901 0.84158 0.91291 0.87881 0.76920 0.91235 0.88799 0.92374 0.89878 0.90288 0.91267 0.90955 0.93168 0.90873 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.15 8.36 71.24 0.60 -2.55 16 2 C -0.04 -0.86 6.11 -17.62 -0.11 -0.97 16 3 C -0.12 -1.93 10.07 71.23 0.72 -1.21 16 4 C -0.25 -5.83 9.67 23.43 0.23 -5.61 16 5 C 0.54 15.52 7.48 86.57 0.65 16.17 16 6 O -0.58 -21.36 12.44 -4.08 -0.05 -21.41 16 7 N -0.71 -15.68 3.61 -446.14 -1.61 -17.29 16 8 C 0.16 3.56 1.84 44.99 0.08 3.64 16 9 H 0.07 2.24 6.91 -2.39 -0.02 2.22 16 10 C 0.05 1.20 5.07 86.30 0.44 1.64 16 11 N -0.68 -23.47 6.12 -517.95 -3.17 -26.64 16 12 C 0.07 2.36 6.17 85.56 0.53 2.89 16 13 C 0.44 21.71 7.82 87.66 0.69 22.40 16 14 O -0.62 -36.70 15.78 -3.06 -0.05 -36.74 16 15 N -0.57 -30.20 5.29 -306.99 -1.62 -31.82 16 16 C -0.33 -19.46 9.68 84.04 0.81 -18.65 16 17 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 18 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 19 N -0.92 -50.10 13.05 21.66 0.28 -49.82 16 20 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 24 C -0.09 -1.42 2.71 -10.07 -0.03 -1.44 16 25 C -0.12 -1.79 5.32 31.67 0.17 -1.62 16 26 C -0.12 -1.59 6.91 31.89 0.22 -1.37 16 27 C -0.13 -2.03 6.83 31.67 0.22 -1.81 16 28 C -0.11 -1.96 6.25 31.32 0.20 -1.76 16 29 H 0.07 1.98 7.53 -2.39 -0.02 1.96 16 30 H 0.07 1.56 7.70 -2.39 -0.02 1.54 16 31 H 0.05 1.86 6.89 -2.39 -0.02 1.84 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.09 7.70 -2.39 -0.02 1.07 16 34 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.41 6.40 8.82 -92.70 -0.82 5.58 16 37 H 0.09 2.00 7.16 -2.39 -0.02 1.98 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.34 12.53 7.44 -89.69 -0.67 11.86 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 42 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 43 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 44 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.06 1.05 7.51 -2.39 -0.02 1.04 16 46 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 51 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.04 0.95 7.44 -2.39 -0.02 0.93 16 Total: -1.00 -76.63 417.17 0.39 -76.23 By element: Atomic # 1 Polarization: 53.50 SS G_CDS: -1.28 Total: 52.21 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 5.87 Total: 9.56 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -6.12 Total: -125.57 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -0.10 Total: -58.16 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -76.63 0.39 -76.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671513466.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.862 kcal (2) G-P(sol) polarization free energy of solvation -76.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds