Wall clock time and date at job start Tue Mar 31 2020 19:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50702 * 119.99746 * 2 1 4 4 C 1.32994 * 120.00292 * 179.97438 * 2 1 3 5 5 C 1.47102 * 119.99707 * 352.85955 * 4 2 1 6 6 O 1.21608 * 120.00363 * 353.44651 * 5 4 2 7 7 N 1.34783 * 119.99716 * 173.44221 * 5 4 2 8 8 C 1.46504 * 119.99554 * 185.05825 * 7 5 4 9 9 H 1.09003 * 109.47299 * 28.50398 * 8 7 5 10 10 C 1.52996 * 109.47100 * 268.49672 * 8 7 5 11 11 N 1.46903 * 109.47007 * 55.00411 * 10 8 7 12 12 C 1.46898 * 111.00199 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46937 * 180.02562 * 12 11 10 14 14 O 1.21289 * 120.00208 * 0.02562 * 13 12 11 15 15 N 1.34786 * 119.99731 * 180.02562 * 13 12 11 16 16 C 1.37098 * 119.99706 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00401 * 0.02562 * 16 15 13 18 18 C 1.38951 * 119.99418 * 179.97438 * 16 15 13 19 19 N 1.31404 * 120.00401 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99719 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47128 * 60.00320 * 20 18 16 22 22 H 1.48500 * 109.47233 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47163 * 300.00322 * 20 18 16 24 24 C 1.52998 * 109.46678 * 148.50141 * 8 7 5 25 25 C 1.54267 * 110.03731 * 57.07254 * 24 8 7 26 26 C 1.54960 * 104.16574 * 217.13625 * 25 24 8 27 27 C 1.54893 * 102.77494 * 37.88283 * 26 25 24 28 28 C 1.53873 * 110.03656 * 299.85267 * 24 8 7 29 29 H 1.09002 * 109.47791 * 264.40891 * 1 2 3 30 30 H 1.09002 * 109.47434 * 24.41563 * 1 2 3 31 31 H 1.09008 * 109.47136 * 144.40929 * 1 2 3 32 32 H 1.08997 * 109.46717 * 269.99105 * 3 2 1 33 33 H 1.08999 * 109.47590 * 29.99600 * 3 2 1 34 34 H 1.09004 * 109.47005 * 149.99986 * 3 2 1 35 35 H 1.07997 * 120.00075 * 172.85720 * 4 2 1 36 36 H 0.96998 * 119.99844 * 5.05377 * 7 5 4 37 37 H 1.08996 * 109.47492 * 295.00589 * 10 8 7 38 38 H 1.08996 * 109.47420 * 174.99831 * 10 8 7 39 39 H 1.00904 * 110.99705 * 56.04246 * 11 10 8 40 40 H 1.08995 * 109.47353 * 300.00199 * 12 11 10 41 41 H 1.09007 * 109.46996 * 60.00448 * 12 11 10 42 42 H 0.96996 * 119.99939 * 359.97438 * 15 13 12 43 43 H 0.96999 * 120.00122 * 179.97438 * 19 18 16 44 44 H 1.08997 * 110.01802 * 178.46385 * 24 8 7 45 45 H 1.09007 * 110.48220 * 335.78333 * 25 24 8 46 46 H 1.09005 * 110.48449 * 98.42052 * 25 24 8 47 47 H 1.09005 * 110.71909 * 279.57327 * 26 25 24 48 48 H 1.08991 * 110.92805 * 156.29189 * 26 25 24 49 49 H 1.08997 * 110.48361 * 203.40643 * 27 26 25 50 50 H 1.09004 * 110.59551 * 80.81943 * 27 26 25 51 51 H 1.08993 * 110.03493 * 238.57112 * 28 24 8 52 52 H 1.09008 * 110.02909 * 359.95544 * 28 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4450 -2.4207 0.1594 6 8 0.2549 -2.4125 0.4092 7 7 2.0981 -3.5924 0.0282 8 6 1.3552 -4.8542 0.0761 9 1 0.3378 -4.6907 -0.2793 10 6 1.3159 -5.3685 1.5165 11 7 0.7607 -4.3284 2.3928 12 6 0.7070 -4.7880 3.7869 13 6 0.1328 -3.6972 4.6537 14 8 -0.1995 -2.6409 4.1587 15 7 -0.0115 -3.8953 5.9791 16 6 -0.5335 -2.9027 6.7677 17 1 -0.8294 -1.9622 6.3270 18 6 -0.6827 -3.1072 8.1340 19 7 -0.3232 -4.2517 8.6702 20 14 -1.3945 -1.7551 9.2085 21 1 -2.7653 -1.4234 8.7436 22 1 -1.4482 -2.2195 10.6180 23 1 -0.5354 -0.5472 9.1182 24 6 2.0471 -5.8873 -0.8155 25 6 3.5117 -6.0747 -0.3690 26 6 4.2906 -6.2680 -1.6946 27 6 3.5805 -5.2827 -2.6559 28 6 2.0906 -5.3844 -2.2691 29 1 -0.3635 -0.1001 1.0228 30 1 -0.3634 0.9358 -0.4248 31 1 -0.3634 -0.8357 -0.5981 32 1 2.4422 1.6197 -1.0277 33 1 1.6713 2.0648 0.5138 34 1 3.2129 1.1748 0.5139 35 1 3.2457 -1.1554 -0.1158 36 1 3.0598 -3.6001 -0.0981 37 1 2.3264 -5.6161 1.8416 38 1 0.6894 -6.2589 1.5674 39 1 -0.1506 -4.0353 2.0736 40 1 0.0761 -5.6743 3.8533 41 1 1.7132 -5.0319 4.1281 42 1 0.2539 -4.7401 6.3749 43 1 -0.4270 -4.3943 9.6240 44 1 1.5169 -6.8383 -0.7653 45 1 3.8668 -5.1879 0.1561 46 1 3.6078 -6.9576 0.2632 47 1 4.1947 -7.2932 -2.0522 48 1 5.3399 -5.9997 -1.5723 49 1 3.7274 -5.5879 -3.6919 50 1 3.9459 -4.2672 -2.5027 51 1 1.5822 -6.0917 -2.9243 52 1 1.6181 -4.4046 -2.3395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671513467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:15 Heat of formation + Delta-G solvation = -71.926643 kcal Electronic energy + Delta-G solvation = -30284.097385 eV Core-core repulsion = 26283.046293 eV Total energy + Delta-G solvation = -4001.051091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.16037 -38.44529 -38.07637 -35.84591 -34.94600 -33.91368 -33.39725 -31.13300 -30.70896 -29.00645 -27.92745 -27.64284 -27.36938 -25.27479 -23.62702 -22.16516 -21.49778 -20.46540 -19.52870 -19.00620 -18.52769 -17.77426 -16.90012 -16.31860 -15.99248 -15.62101 -15.32126 -14.87544 -14.53213 -14.39606 -14.21410 -14.01881 -13.73701 -13.66492 -13.52811 -13.49041 -13.02171 -12.98811 -12.81921 -12.28942 -12.22003 -12.07346 -11.66964 -11.57540 -11.46454 -11.40257 -11.35908 -11.34364 -11.26428 -11.01212 -10.94348 -10.85505 -10.69870 -10.67546 -10.38098 -10.12764 -9.40025 -9.21132 -8.93779 -8.60883 -8.25258 -7.87031 -7.78461 -6.32777 -3.72827 1.63513 3.25950 3.30244 3.35410 3.46313 3.73477 4.04393 4.13940 4.28296 4.36449 4.42247 4.66732 4.88938 4.96490 5.07882 5.10636 5.18606 5.26133 5.29542 5.32147 5.34758 5.36113 5.41458 5.45343 5.51423 5.55737 5.58558 5.66001 5.69887 5.74839 5.79284 5.83552 5.85412 5.92130 5.93360 6.06473 6.11527 6.11638 6.12134 6.14187 6.30817 6.39714 6.68290 6.73821 6.83560 7.44404 7.63428 7.86403 7.98249 8.16920 8.72595 8.73087 9.28175 9.65739 10.19026 10.85408 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010915 B = 0.002989 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.668830 B = 9366.132490 C =11360.005321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.034 4.034 3 C -0.126 4.126 4 C -0.233 4.233 5 C 0.556 3.444 6 O -0.521 6.521 7 N -0.714 5.714 8 C 0.157 3.843 9 H 0.087 0.913 10 C 0.045 3.955 11 N -0.658 5.658 12 C 0.051 3.949 13 C 0.443 3.557 14 O -0.573 6.573 15 N -0.569 5.569 16 C -0.295 4.295 17 H 0.101 0.899 18 C 0.020 3.980 19 N -0.905 5.905 20 Si 0.929 3.071 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.098 4.098 25 C -0.122 4.122 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.119 4.119 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.393 0.607 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.358 0.642 40 H 0.038 0.962 41 H 0.080 0.920 42 H 0.391 0.609 43 H 0.270 0.730 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.061 0.939 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.037 -2.692 -22.885 25.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.036 4.036 3 C -0.182 4.182 4 C -0.254 4.254 5 C 0.346 3.654 6 O -0.398 6.398 7 N -0.366 5.366 8 C 0.052 3.948 9 H 0.105 0.895 10 C -0.086 4.086 11 N -0.292 5.292 12 C -0.082 4.082 13 C 0.228 3.772 14 O -0.456 6.456 15 N -0.207 5.207 16 C -0.425 4.425 17 H 0.119 0.881 18 C -0.181 4.181 19 N -0.547 5.547 20 Si 0.757 3.243 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.118 4.118 25 C -0.160 4.160 26 C -0.163 4.163 27 C -0.161 4.161 28 C -0.156 4.156 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.227 0.773 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.179 0.821 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.224 0.776 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.083 0.917 51 H 0.080 0.920 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.508 -1.696 -22.773 24.736 hybrid contribution -0.230 -0.702 1.001 1.244 sum 9.278 -2.397 -21.772 23.787 Atomic orbital electron populations 1.21131 0.90868 1.01579 1.04311 1.22480 0.96964 0.94259 0.89856 1.20980 1.00174 0.94815 1.02247 1.22287 0.99653 0.92581 1.10923 1.18247 0.87059 0.83765 0.76315 1.90745 1.15570 1.87157 1.46356 1.45652 1.10531 1.05034 1.75389 1.20891 0.96550 0.83535 0.93856 0.89498 1.22427 1.00206 0.92934 0.93003 1.60037 1.32807 1.36418 0.99935 1.21660 1.00708 0.95878 0.89960 1.19866 0.84847 0.89351 0.83104 1.90555 1.54100 1.27571 1.73339 1.41859 1.56389 1.16787 1.05624 1.19643 1.37361 0.96620 0.88879 0.88107 1.25227 0.97981 0.97594 0.97258 1.69604 1.48458 1.23613 1.13064 0.85942 0.79536 0.80533 0.78337 1.19973 1.21043 1.19969 1.22058 0.96573 0.98488 0.94667 1.22484 0.94235 1.01992 0.97300 1.22515 0.98963 0.99452 0.95356 1.22349 0.95248 0.99531 0.98975 1.22163 0.96727 1.01613 0.95139 0.89525 0.93380 0.89537 0.90942 0.90935 0.91298 0.86550 0.77257 0.91148 0.95336 0.82054 0.94425 0.90162 0.77616 0.91977 0.89863 0.91174 0.91336 0.91638 0.91674 0.92001 0.91685 0.92004 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 8.46 36.00 0.30 -1.42 16 2 C -0.03 -0.43 6.11 -101.17 -0.62 -1.05 16 3 C -0.13 -1.20 10.01 36.01 0.36 -0.84 16 4 C -0.23 -3.01 9.62 -37.81 -0.36 -3.37 16 5 C 0.56 8.22 7.05 -12.66 -0.09 8.13 16 6 O -0.52 -9.50 11.13 5.27 0.06 -9.44 16 7 N -0.71 -8.27 4.14 -54.99 -0.23 -8.49 16 8 C 0.16 1.76 1.91 -67.93 -0.13 1.63 16 9 H 0.09 1.14 7.45 -51.93 -0.39 0.75 16 10 C 0.05 0.59 5.26 -3.82 -0.02 0.57 16 11 N -0.66 -11.79 4.85 -115.06 -0.56 -12.35 16 12 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 13 C 0.44 11.19 7.82 -10.98 -0.09 11.11 16 14 O -0.57 -16.63 15.78 5.55 0.09 -16.55 16 15 N -0.57 -15.19 5.29 -10.96 -0.06 -15.25 16 16 C -0.30 -8.60 9.68 -14.93 -0.14 -8.75 16 17 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 19 N -0.91 -25.49 13.05 55.50 0.72 -24.76 16 20 Si 0.93 21.84 29.55 -169.99 -5.02 16.81 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.10 -0.80 2.81 -89.50 -0.25 -1.05 16 25 C -0.12 -0.90 5.01 -25.03 -0.13 -1.03 16 26 C -0.13 -0.80 6.91 -24.70 -0.17 -0.97 16 27 C -0.12 -0.82 6.83 -25.07 -0.17 -0.99 16 28 C -0.12 -0.91 6.19 -25.61 -0.16 -1.07 16 29 H 0.09 1.48 8.03 -51.93 -0.42 1.07 16 30 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.09 1.31 6.16 -51.92 -0.32 0.99 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 34 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.39 3.76 6.75 -40.82 -0.28 3.48 16 37 H 0.07 0.87 7.13 -51.93 -0.37 0.50 16 38 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.36 7.25 7.20 -39.29 -0.28 6.97 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.39 9.98 7.90 -40.82 -0.32 9.65 16 43 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.55 6.04 -51.92 -0.31 0.24 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 52 H 0.07 0.62 7.38 -51.92 -0.38 0.24 16 LS Contribution 411.86 15.07 6.21 6.21 Total: -1.00 -33.74 411.86 -9.50 -43.24 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: -8.92 Total: 18.27 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.79 Total: 2.31 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.12 Total: -60.85 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: 0.15 Total: -25.98 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.74 -9.50 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671513467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.688 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds