Wall clock time and date at job start Tue Mar 31 2020 19:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50702 * 119.99746 * 2 1 4 4 C 1.32994 * 120.00292 * 179.97438 * 2 1 3 5 5 C 1.47102 * 119.99707 * 352.85955 * 4 2 1 6 6 O 1.21608 * 120.00363 * 353.44651 * 5 4 2 7 7 N 1.34783 * 119.99716 * 173.44221 * 5 4 2 8 8 C 1.46504 * 119.99554 * 185.05825 * 7 5 4 9 9 H 1.09003 * 109.47299 * 28.50398 * 8 7 5 10 10 C 1.52996 * 109.47100 * 268.49672 * 8 7 5 11 11 N 1.46903 * 109.47007 * 55.00411 * 10 8 7 12 12 C 1.46898 * 111.00199 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46937 * 180.02562 * 12 11 10 14 14 O 1.21289 * 120.00208 * 0.02562 * 13 12 11 15 15 N 1.34786 * 119.99731 * 180.02562 * 13 12 11 16 16 C 1.37098 * 119.99706 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00401 * 0.02562 * 16 15 13 18 18 C 1.38951 * 119.99418 * 179.97438 * 16 15 13 19 19 N 1.31404 * 120.00401 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99719 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47128 * 60.00320 * 20 18 16 22 22 H 1.48500 * 109.47233 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47163 * 300.00322 * 20 18 16 24 24 C 1.52998 * 109.46678 * 148.50141 * 8 7 5 25 25 C 1.54267 * 110.03731 * 57.07254 * 24 8 7 26 26 C 1.54960 * 104.16574 * 217.13625 * 25 24 8 27 27 C 1.54893 * 102.77494 * 37.88283 * 26 25 24 28 28 C 1.53873 * 110.03656 * 299.85267 * 24 8 7 29 29 H 1.09002 * 109.47791 * 264.40891 * 1 2 3 30 30 H 1.09002 * 109.47434 * 24.41563 * 1 2 3 31 31 H 1.09008 * 109.47136 * 144.40929 * 1 2 3 32 32 H 1.08997 * 109.46717 * 269.99105 * 3 2 1 33 33 H 1.08999 * 109.47590 * 29.99600 * 3 2 1 34 34 H 1.09004 * 109.47005 * 149.99986 * 3 2 1 35 35 H 1.07997 * 120.00075 * 172.85720 * 4 2 1 36 36 H 0.96998 * 119.99844 * 5.05377 * 7 5 4 37 37 H 1.08996 * 109.47492 * 295.00589 * 10 8 7 38 38 H 1.08996 * 109.47420 * 174.99831 * 10 8 7 39 39 H 1.00904 * 110.99705 * 56.04246 * 11 10 8 40 40 H 1.08995 * 109.47353 * 300.00199 * 12 11 10 41 41 H 1.09007 * 109.46996 * 60.00448 * 12 11 10 42 42 H 0.96996 * 119.99939 * 359.97438 * 15 13 12 43 43 H 0.96999 * 120.00122 * 179.97438 * 19 18 16 44 44 H 1.08997 * 110.01802 * 178.46385 * 24 8 7 45 45 H 1.09007 * 110.48220 * 335.78333 * 25 24 8 46 46 H 1.09005 * 110.48449 * 98.42052 * 25 24 8 47 47 H 1.09005 * 110.71909 * 279.57327 * 26 25 24 48 48 H 1.08991 * 110.92805 * 156.29189 * 26 25 24 49 49 H 1.08997 * 110.48361 * 203.40643 * 27 26 25 50 50 H 1.09004 * 110.59551 * 80.81943 * 27 26 25 51 51 H 1.08993 * 110.03493 * 238.57112 * 28 24 8 52 52 H 1.09008 * 110.02909 * 359.95544 * 28 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4450 -2.4207 0.1594 6 8 0.2549 -2.4125 0.4092 7 7 2.0981 -3.5924 0.0282 8 6 1.3552 -4.8542 0.0761 9 1 0.3378 -4.6907 -0.2793 10 6 1.3159 -5.3685 1.5165 11 7 0.7607 -4.3284 2.3928 12 6 0.7070 -4.7880 3.7869 13 6 0.1328 -3.6972 4.6537 14 8 -0.1995 -2.6409 4.1587 15 7 -0.0115 -3.8953 5.9791 16 6 -0.5335 -2.9027 6.7677 17 1 -0.8294 -1.9622 6.3270 18 6 -0.6827 -3.1072 8.1340 19 7 -0.3232 -4.2517 8.6702 20 14 -1.3945 -1.7551 9.2085 21 1 -2.7653 -1.4234 8.7436 22 1 -1.4482 -2.2195 10.6180 23 1 -0.5354 -0.5472 9.1182 24 6 2.0471 -5.8873 -0.8155 25 6 3.5117 -6.0747 -0.3690 26 6 4.2906 -6.2680 -1.6946 27 6 3.5805 -5.2827 -2.6559 28 6 2.0906 -5.3844 -2.2691 29 1 -0.3635 -0.1001 1.0228 30 1 -0.3634 0.9358 -0.4248 31 1 -0.3634 -0.8357 -0.5981 32 1 2.4422 1.6197 -1.0277 33 1 1.6713 2.0648 0.5138 34 1 3.2129 1.1748 0.5139 35 1 3.2457 -1.1554 -0.1158 36 1 3.0598 -3.6001 -0.0981 37 1 2.3264 -5.6161 1.8416 38 1 0.6894 -6.2589 1.5674 39 1 -0.1506 -4.0353 2.0736 40 1 0.0761 -5.6743 3.8533 41 1 1.7132 -5.0319 4.1281 42 1 0.2539 -4.7401 6.3749 43 1 -0.4270 -4.3943 9.6240 44 1 1.5169 -6.8383 -0.7653 45 1 3.8668 -5.1879 0.1561 46 1 3.6078 -6.9576 0.2632 47 1 4.1947 -7.2932 -2.0522 48 1 5.3399 -5.9997 -1.5723 49 1 3.7274 -5.5879 -3.6919 50 1 3.9459 -4.2672 -2.5027 51 1 1.5822 -6.0917 -2.9243 52 1 1.6181 -4.4046 -2.3395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671513467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:14 Heat of formation + Delta-G solvation = -94.879977 kcal Electronic energy + Delta-G solvation = -30285.092716 eV Core-core repulsion = 26283.046293 eV Total energy + Delta-G solvation = -4002.046423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.14768 -40.08404 -39.31233 -36.95758 -36.16394 -35.80875 -34.70315 -33.26356 -31.72853 -29.61218 -28.98467 -28.70818 -28.49017 -26.91605 -25.15367 -23.24672 -22.34749 -21.15233 -21.12059 -20.25976 -19.88442 -19.45530 -18.01789 -17.79614 -17.15112 -16.78285 -16.39760 -16.38361 -16.02627 -15.82961 -15.58495 -15.11189 -15.03294 -14.83042 -14.78918 -14.33868 -14.21358 -14.07805 -13.91791 -13.63986 -13.44088 -13.27216 -13.16275 -13.04078 -12.80338 -12.69337 -12.57088 -12.45169 -12.34575 -12.13916 -11.90859 -11.81894 -11.77892 -11.51911 -11.49916 -11.43220 -11.31547 -10.41149 -10.30118 -10.01973 -10.00417 -9.60020 -9.19622 -8.47478 -5.96184 0.59856 1.37945 1.38724 1.50367 2.05669 2.28038 2.46832 2.65170 2.94936 3.19198 3.50117 3.69700 3.78841 3.90527 3.96911 4.00789 4.19127 4.26477 4.34532 4.40749 4.48265 4.49915 4.55395 4.62981 4.64926 4.67327 4.70967 4.71672 4.77357 4.80452 4.85947 4.91071 4.94985 5.03332 5.09203 5.12367 5.16314 5.23682 5.33168 5.38788 5.40024 5.48925 5.56062 5.61709 5.75427 5.82662 5.91989 6.16896 6.45182 6.60654 6.89175 7.12250 7.55666 7.65439 8.12945 8.70057 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010915 B = 0.002989 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.668830 B = 9366.132490 C =11360.005321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.043 4.043 3 C -0.121 4.121 4 C -0.243 4.243 5 C 0.544 3.456 6 O -0.565 6.565 7 N -0.699 5.699 8 C 0.162 3.838 9 H 0.063 0.937 10 C 0.046 3.954 11 N -0.671 5.671 12 C 0.065 3.935 13 C 0.436 3.564 14 O -0.617 6.617 15 N -0.575 5.575 16 C -0.334 4.334 17 H 0.075 0.925 18 C -0.013 4.013 19 N -0.921 5.921 20 Si 0.993 3.007 21 H -0.273 1.273 22 H -0.267 1.267 23 H -0.272 1.272 24 C -0.090 4.090 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.117 4.117 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.147 0.853 36 H 0.405 0.595 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.341 0.659 40 H 0.059 0.941 41 H 0.102 0.898 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.067 0.933 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.033 -3.407 -23.409 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.045 4.045 3 C -0.177 4.177 4 C -0.264 4.264 5 C 0.334 3.666 6 O -0.446 6.446 7 N -0.351 5.351 8 C 0.056 3.944 9 H 0.081 0.919 10 C -0.084 4.084 11 N -0.304 5.304 12 C -0.067 4.067 13 C 0.224 3.776 14 O -0.503 6.503 15 N -0.212 5.212 16 C -0.464 4.464 17 H 0.093 0.907 18 C -0.212 4.212 19 N -0.562 5.562 20 Si 0.816 3.184 21 H -0.198 1.198 22 H -0.191 1.191 23 H -0.197 1.197 24 C -0.109 4.109 25 C -0.159 4.159 26 C -0.157 4.157 27 C -0.159 4.159 28 C -0.155 4.155 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.165 0.835 36 H 0.242 0.758 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.161 0.839 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.083 0.917 51 H 0.086 0.914 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.564 -2.471 -23.304 26.133 hybrid contribution -0.869 -0.523 1.125 1.514 sum 10.695 -2.993 -22.180 24.805 Atomic orbital electron populations 1.20987 0.92541 1.02153 1.01666 1.22774 0.96188 0.96043 0.89493 1.21012 0.99943 0.92783 1.03956 1.22548 1.01075 0.91720 1.11046 1.18742 0.86787 0.85192 0.75866 1.90737 1.17492 1.87842 1.48523 1.45552 1.11075 1.04483 1.74016 1.20868 0.95959 0.84104 0.93422 0.91855 1.22570 1.00701 0.92184 0.92945 1.60054 1.31928 1.38584 0.99809 1.21531 1.01587 0.93889 0.89724 1.20933 0.83542 0.90122 0.83020 1.90529 1.55747 1.29933 1.74075 1.41915 1.56592 1.16537 1.06204 1.19599 1.39866 0.96776 0.90119 0.90740 1.26031 0.97524 0.99934 0.97743 1.69663 1.48065 1.24698 1.13783 0.85005 0.78599 0.77714 0.77096 1.19830 1.19121 1.19712 1.22011 0.97082 0.97607 0.94198 1.22481 0.93377 1.02049 0.97990 1.22489 0.99168 0.99668 0.94407 1.22343 0.94185 0.99769 0.99574 1.22132 0.97672 1.00763 0.94902 0.93490 0.90996 0.91168 0.88440 0.90879 0.90382 0.83507 0.75815 0.89655 0.93965 0.83923 0.92328 0.88034 0.77068 0.91256 0.88932 0.91612 0.90742 0.91054 0.90853 0.91222 0.91671 0.91384 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.51 8.46 71.23 0.60 -2.91 16 2 C -0.04 -1.10 6.11 -17.62 -0.11 -1.21 16 3 C -0.12 -2.12 10.01 71.24 0.71 -1.41 16 4 C -0.24 -6.21 9.62 23.43 0.23 -5.99 16 5 C 0.54 16.55 7.05 86.57 0.61 17.16 16 6 O -0.57 -22.06 11.13 -4.06 -0.05 -22.10 16 7 N -0.70 -16.01 4.14 -446.13 -1.85 -17.86 16 8 C 0.16 3.58 1.91 44.99 0.09 3.67 16 9 H 0.06 1.73 7.45 -2.39 -0.02 1.71 16 10 C 0.05 1.15 5.26 86.30 0.45 1.61 16 11 N -0.67 -24.25 4.85 -517.95 -2.51 -26.77 16 12 C 0.07 2.49 6.17 85.56 0.53 3.02 16 13 C 0.44 22.65 7.82 87.66 0.69 23.34 16 14 O -0.62 -37.55 15.78 -3.06 -0.05 -37.60 16 15 N -0.57 -31.39 5.29 -306.97 -1.62 -33.01 16 16 C -0.33 -20.00 9.68 84.04 0.81 -19.18 16 17 H 0.07 4.78 7.16 -2.91 -0.02 4.75 16 18 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 19 N -0.92 -51.38 13.05 21.66 0.28 -51.09 16 20 Si 0.99 44.64 29.55 68.60 2.03 46.67 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 C -0.09 -1.32 2.81 -10.07 -0.03 -1.35 16 25 C -0.12 -1.48 5.01 31.69 0.16 -1.32 16 26 C -0.12 -1.19 6.91 31.91 0.22 -0.97 16 27 C -0.12 -1.34 6.83 31.67 0.22 -1.12 16 28 C -0.12 -1.64 6.19 31.32 0.19 -1.44 16 29 H 0.05 1.77 8.03 -2.39 -0.02 1.75 16 30 H 0.07 1.71 8.09 -2.39 -0.02 1.69 16 31 H 0.07 2.31 6.16 -2.38 -0.01 2.29 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 34 H 0.08 1.24 8.07 -2.39 -0.02 1.23 16 35 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.40 7.22 6.75 -92.71 -0.63 6.59 16 37 H 0.09 1.90 7.13 -2.39 -0.02 1.89 16 38 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.34 14.45 7.20 -89.69 -0.65 13.80 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.10 3.46 8.14 -2.38 -0.02 3.44 16 42 H 0.40 20.42 7.90 -92.71 -0.73 19.69 16 43 H 0.28 14.48 8.31 -92.71 -0.77 13.70 16 44 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.07 0.87 6.04 -2.38 -0.01 0.86 16 46 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 48 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 51 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.05 0.91 7.38 -2.38 -0.02 0.90 16 Total: -1.00 -76.47 411.86 1.00 -75.47 By element: Atomic # 1 Polarization: 55.73 SS G_CDS: -1.07 Total: 54.66 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 5.84 Total: 11.65 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -5.70 Total: -128.74 kcal Atomic # 8 Polarization: -59.61 SS G_CDS: -0.09 Total: -59.70 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -76.47 1.00 -75.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671513467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.410 kcal (2) G-P(sol) polarization free energy of solvation -76.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds