Wall clock time and date at job start Tue Mar 31 2020 20:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00227 * 2 1 4 4 C 1.50707 * 120.00137 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47038 * 94.99898 * 4 2 1 6 6 C 1.50695 * 109.47200 * 180.02562 * 5 4 2 7 7 O 1.21285 * 119.99856 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00505 * 180.27368 * 6 5 4 9 9 C 1.46497 * 120.00441 * 179.72342 * 8 6 5 10 10 H 1.09001 * 110.27573 * 327.09446 * 9 8 6 11 11 C 1.54594 * 110.30780 * 89.28810 * 9 8 6 12 12 C 1.54935 * 102.92224 * 96.95513 * 11 9 8 13 13 N 1.48532 * 103.22504 * 37.41665 * 12 11 9 14 14 C 1.46898 * 111.00214 * 200.27401 * 13 12 11 15 15 C 1.50697 * 109.47151 * 300.97833 * 14 13 12 16 16 O 1.21297 * 120.00304 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99964 * 179.97438 * 15 14 13 18 18 C 1.37106 * 120.00032 * 179.97438 * 17 15 14 19 19 H 1.07996 * 119.99395 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99752 * 179.97438 * 18 17 15 21 21 N 1.31406 * 120.00333 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99635 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46822 * 90.00106 * 22 20 18 24 24 H 1.48500 * 109.46782 * 210.00036 * 22 20 18 25 25 H 1.48497 * 109.47086 * 330.00230 * 22 20 18 26 26 C 1.47904 * 105.82048 * 320.79193 * 13 12 11 27 27 H 1.09000 * 110.07958 * 265.88432 * 26 13 12 28 28 C 1.52997 * 109.91969 * 144.68536 * 26 13 12 29 29 C 1.53000 * 109.47239 * 67.62158 * 28 26 13 30 30 H 1.07997 * 119.99915 * 359.97438 * 1 2 3 31 31 H 1.08006 * 119.99784 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46857 * 270.00294 * 3 2 1 33 33 H 1.09000 * 109.46984 * 30.00092 * 3 2 1 34 34 H 1.09003 * 109.47273 * 149.99665 * 3 2 1 35 35 H 1.09007 * 109.46723 * 335.00238 * 4 2 1 36 36 H 1.08991 * 109.47145 * 215.00422 * 4 2 1 37 37 H 1.08996 * 109.46985 * 60.00088 * 5 4 2 38 38 H 1.09000 * 109.47091 * 300.00017 * 5 4 2 39 39 H 0.97004 * 119.99238 * 359.72693 * 8 6 5 40 40 H 1.08999 * 110.72544 * 215.32089 * 11 9 8 41 41 H 1.09003 * 110.72668 * 338.60238 * 11 9 8 42 42 H 1.08990 * 110.67154 * 278.98163 * 12 11 9 43 43 H 1.09008 * 110.66377 * 155.84549 * 12 11 9 44 44 H 1.09005 * 109.46789 * 60.97561 * 14 13 12 45 45 H 1.09002 * 109.47661 * 180.97430 * 14 13 12 46 46 H 0.96996 * 119.99962 * 359.97438 * 17 15 14 47 47 H 0.96995 * 119.99989 * 180.02562 * 21 20 18 48 48 H 1.08992 * 109.47173 * 187.62556 * 28 26 13 49 49 H 1.09002 * 109.46896 * 307.62184 * 28 26 13 50 50 H 1.09003 * 109.47114 * 172.75198 * 29 28 26 51 51 H 1.09005 * 109.47121 * 292.74647 * 29 28 26 52 52 H 1.08995 * 109.47271 * 52.74936 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6846 -1.4363 6 6 3.1803 -2.9899 -1.4358 7 8 3.4035 -3.5608 -0.3892 8 7 3.6101 -3.5205 -2.5978 9 6 4.3474 -4.7865 -2.5967 10 1 4.9489 -4.8725 -1.6918 11 6 3.3683 -5.9777 -2.7080 12 6 3.3902 -6.3038 -4.2225 13 7 4.8102 -6.0818 -4.5974 14 6 4.9459 -5.8721 -6.0450 15 6 4.4145 -7.0761 -6.7791 16 8 3.9671 -8.0167 -6.1575 17 7 4.4363 -7.1078 -8.1263 18 6 3.9532 -8.2035 -8.7942 19 1 3.5550 -9.0409 -8.2406 20 6 3.9753 -8.2358 -10.1831 21 7 4.4594 -7.2166 -10.8565 22 14 3.3165 -9.7284 -11.0930 23 1 1.8692 -9.5415 -11.3679 24 1 4.0474 -9.8884 -12.3758 25 1 3.5093 -10.9416 -10.2587 26 6 5.2433 -4.8842 -3.8453 27 1 5.1223 -3.9923 -4.4600 28 6 6.7072 -5.0332 -3.4261 29 6 7.5995 -4.9988 -4.6685 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 2.2451 1.6197 -1.0277 33 1 1.4745 2.0647 0.5139 34 1 3.0159 1.1747 0.5139 35 1 1.4385 -2.0853 0.4352 36 1 2.9741 -1.1986 0.5900 37 1 3.0523 -0.9044 -1.8709 38 1 1.5167 -1.7911 -2.0256 39 1 3.4313 -3.0641 -3.4348 40 1 3.7259 -6.8266 -2.1254 41 1 2.3673 -5.6852 -2.3910 42 1 2.7369 -5.6258 -4.7715 43 1 3.1039 -7.3411 -4.3968 44 1 4.3795 -4.9883 -6.3387 45 1 5.9973 -5.7292 -6.2945 46 1 4.7936 -6.3555 -8.6234 47 1 4.4744 -7.2391 -11.8261 48 1 6.9796 -4.2143 -2.7603 49 1 6.8419 -5.9827 -2.9082 50 1 8.6458 -4.9752 -4.3638 51 1 7.4168 -5.8881 -5.2718 52 1 7.3717 -4.1088 -5.2549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689174996.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:27 Heat of formation + Delta-G solvation = -63.952850 kcal Electronic energy + Delta-G solvation = -29504.129432 eV Core-core repulsion = 25503.424110 eV Total energy + Delta-G solvation = -4000.705322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44128 -39.15194 -37.71770 -36.68735 -34.48335 -33.93269 -33.04192 -31.89846 -31.30121 -30.57801 -27.76733 -27.60894 -26.61692 -24.92735 -24.09654 -22.57081 -21.43642 -20.50977 -19.83976 -19.21058 -18.75945 -17.89781 -17.14611 -16.56299 -16.02051 -15.89101 -15.31818 -15.17288 -14.99800 -14.66166 -14.40965 -14.23778 -14.02003 -13.86642 -13.67076 -13.40866 -13.27508 -12.92293 -12.71127 -12.54296 -12.40290 -12.25777 -12.13875 -12.06024 -11.60462 -11.39162 -11.34390 -11.29428 -11.22037 -11.17501 -11.06715 -10.90829 -10.66745 -10.48166 -10.39342 -10.24018 -10.01152 -9.51338 -9.37631 -9.16123 -8.44111 -8.03938 -7.93650 -6.44000 -3.84784 1.84142 2.47039 2.99085 3.15969 3.24986 3.30938 3.87449 4.02410 4.23192 4.36444 4.47048 4.53090 4.67086 4.70420 4.85352 4.91932 4.99319 5.12207 5.16636 5.21359 5.22230 5.23874 5.28449 5.31101 5.42371 5.49775 5.53540 5.57800 5.63602 5.66102 5.68886 5.75584 5.81766 5.83962 5.96702 6.00899 6.02441 6.18450 6.24019 6.27813 6.28544 6.42479 6.43936 6.51498 6.61406 7.18277 7.24281 7.32922 7.53198 8.03877 8.05657 8.59215 9.15905 9.51653 10.03384 10.73688 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015492 B = 0.002121 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.007360 B =13198.532460 C =13909.861160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 C -0.121 4.121 4 C -0.070 4.070 5 C -0.135 4.135 6 C 0.513 3.487 7 O -0.540 6.540 8 N -0.724 5.724 9 C 0.136 3.864 10 H 0.099 0.901 11 C -0.132 4.132 12 C 0.040 3.960 13 N -0.483 5.483 14 C 0.032 3.968 15 C 0.443 3.557 16 O -0.578 6.578 17 N -0.563 5.563 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.058 3.942 27 H 0.055 0.945 28 C -0.104 4.104 29 C -0.155 4.155 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.399 0.601 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.112 0.888 44 H 0.045 0.955 45 H 0.096 0.904 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.060 0.940 49 H 0.074 0.926 50 H 0.051 0.949 51 H 0.068 0.932 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 16.891 16.467 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.127 4.127 3 C -0.178 4.178 4 C -0.108 4.108 5 C -0.175 4.175 6 C 0.299 3.701 7 O -0.417 6.417 8 N -0.375 5.375 9 C 0.031 3.969 10 H 0.117 0.883 11 C -0.171 4.171 12 C -0.088 4.088 13 N -0.208 5.208 14 C -0.099 4.099 15 C 0.229 3.771 16 O -0.463 6.463 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.051 4.051 27 H 0.073 0.927 28 C -0.142 4.142 29 C -0.212 4.212 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.233 0.767 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.130 0.870 44 H 0.063 0.937 45 H 0.114 0.886 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.093 0.907 50 H 0.070 0.930 51 H 0.087 0.913 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.069 15.404 17.547 23.374 hybrid contribution -0.712 0.800 -1.768 2.067 sum -1.781 16.204 15.778 22.687 Atomic orbital electron populations 1.23738 0.95263 1.01950 1.02270 1.21785 0.95443 0.95701 0.99770 1.20887 1.00246 0.94499 1.02146 1.20426 1.00870 0.94272 0.95190 1.21646 1.01279 0.95073 0.99515 1.20709 0.79055 0.86722 0.83588 1.90710 1.56674 1.62949 1.31373 1.46235 1.57661 1.24482 1.09162 1.21888 0.92811 0.82967 0.99201 0.88284 1.22939 0.99036 0.97656 0.97481 1.23397 0.88194 1.04153 0.93007 1.64529 1.19340 1.32427 1.04496 1.22252 1.02308 0.96934 0.88451 1.19700 0.85361 0.89131 0.82957 1.90477 1.50980 1.38149 1.66652 1.41853 1.54908 1.18911 1.04332 1.19695 1.37055 0.96976 0.89041 0.87905 1.25257 0.97517 0.98525 0.96650 1.69607 1.45980 1.30568 1.08161 0.85864 0.78623 0.81247 0.78609 1.20453 1.20922 1.19395 1.22754 0.95546 0.93058 0.93762 0.92708 1.21469 0.92512 1.02230 0.97999 1.21879 0.98927 1.02226 0.98163 0.88497 0.88396 0.91416 0.91893 0.91751 0.90509 0.90463 0.88829 0.88815 0.76721 0.89946 0.91153 0.94750 0.86957 0.93703 0.88632 0.77533 0.91881 0.92184 0.90734 0.92960 0.91310 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.34 13.89 29.02 0.40 -0.94 16 2 C -0.13 -0.90 5.31 -101.06 -0.54 -1.44 16 3 C -0.12 -0.69 10.03 36.01 0.36 -0.33 16 4 C -0.07 -0.57 4.67 -27.88 -0.13 -0.70 16 5 C -0.14 -1.00 5.68 -27.89 -0.16 -1.16 16 6 C 0.51 5.47 7.83 -10.99 -0.09 5.39 16 7 O -0.54 -7.83 15.63 5.55 0.09 -7.74 16 8 N -0.72 -7.15 5.06 -52.50 -0.27 -7.42 16 9 C 0.14 1.63 2.98 -66.58 -0.20 1.43 16 10 H 0.10 1.28 7.10 -51.93 -0.37 0.91 16 11 C -0.13 -1.78 6.78 -24.87 -0.17 -1.95 16 12 C 0.04 0.64 5.54 -1.90 -0.01 0.63 16 13 N -0.48 -7.66 4.67 -224.01 -1.05 -8.71 16 14 C 0.03 0.55 4.99 -4.98 -0.02 0.53 16 15 C 0.44 10.16 7.51 -10.99 -0.08 10.08 16 16 O -0.58 -15.10 13.57 5.54 0.08 -15.03 16 17 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 18 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 22 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.06 0.71 2.37 -66.65 -0.16 0.55 16 27 H 0.06 0.62 7.17 -51.93 -0.37 0.25 16 28 C -0.10 -1.19 5.38 -26.73 -0.14 -1.33 16 29 C -0.15 -1.76 8.76 37.16 0.33 -1.44 16 30 H 0.10 0.57 8.04 -52.49 -0.42 0.15 16 31 H 0.10 0.66 7.99 -52.48 -0.42 0.24 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.32 8.06 -51.93 -0.42 -0.10 16 34 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.08 0.71 7.94 -51.93 -0.41 0.30 16 36 H 0.08 0.68 8.05 -51.93 -0.42 0.26 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.40 3.13 8.34 -40.82 -0.34 2.78 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 42 H 0.03 0.54 8.01 -51.93 -0.42 0.13 16 43 H 0.11 2.20 6.26 -51.92 -0.32 1.88 16 44 H 0.05 0.70 7.99 -51.93 -0.41 0.29 16 45 H 0.10 1.52 5.35 -51.93 -0.28 1.24 16 46 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 47 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.07 0.93 6.25 -51.93 -0.32 0.60 16 52 H 0.05 0.52 8.13 -51.93 -0.42 0.10 16 LS Contribution 416.21 15.07 6.27 6.27 Total: -1.00 -31.70 416.21 -9.07 -40.77 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -8.98 Total: 12.06 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -0.85 Total: 1.49 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.65 Total: -53.66 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.16 Total: -22.77 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.70 -9.07 -40.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689174996.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.186 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds