Wall clock time and date at job start Tue Mar 31 2020 20:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 120.00495 * 2 1 4 4 H 1.09004 * 109.47192 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47321 * 240.00284 * 3 2 1 6 6 C 1.52999 * 109.47169 * 64.99979 * 5 3 2 7 7 C 1.53001 * 109.47147 * 120.00219 * 3 2 1 8 8 C 1.50706 * 109.46929 * 295.00145 * 7 3 2 9 9 O 1.21282 * 119.99925 * 359.97438 * 8 7 3 10 10 N 1.34778 * 119.99694 * 180.02562 * 8 7 3 11 11 C 1.46505 * 119.99607 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.50484 * 324.91552 * 11 10 8 13 13 C 1.53111 * 109.50513 * 84.99647 * 11 10 8 14 14 C 1.53120 * 109.16356 * 177.59503 * 13 11 10 15 15 C 1.53044 * 109.27534 * 302.34527 * 14 13 11 16 16 N 1.46843 * 109.52215 * 59.18061 * 15 14 13 17 17 C 1.46898 * 110.99911 * 174.16129 * 16 15 14 18 18 C 1.50696 * 109.47176 * 66.04283 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46935 * 60.00256 * 25 23 21 27 27 H 1.48495 * 109.46983 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47384 * 300.00256 * 25 23 21 29 29 C 1.46852 * 111.19972 * 298.25561 * 16 15 14 30 30 H 1.08003 * 119.99389 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00680 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99389 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47337 * 184.99879 * 5 3 2 34 34 H 1.09002 * 109.46873 * 304.99616 * 5 3 2 35 35 H 1.08993 * 109.47293 * 60.00203 * 6 5 3 36 36 H 1.09000 * 109.47074 * 180.02562 * 6 5 3 37 37 H 1.09000 * 109.46909 * 300.00162 * 6 5 3 38 38 H 1.09004 * 109.47079 * 175.00151 * 7 3 2 39 39 H 1.08994 * 109.47344 * 54.99880 * 7 3 2 40 40 H 0.96992 * 120.00447 * 359.97438 * 10 8 7 41 41 H 1.09002 * 109.52619 * 57.68584 * 13 11 10 42 42 H 1.09002 * 109.52566 * 297.49836 * 13 11 10 43 43 H 1.08995 * 109.50413 * 182.40884 * 14 13 11 44 44 H 1.08996 * 109.50302 * 62.28319 * 14 13 11 45 45 H 1.09002 * 109.46309 * 299.16288 * 15 14 13 46 46 H 1.08999 * 109.45793 * 179.19306 * 15 14 13 47 47 H 1.09000 * 109.46741 * 306.04225 * 17 16 15 48 48 H 1.09002 * 109.46898 * 186.04215 * 17 16 15 49 49 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 51 51 H 1.08993 * 109.46650 * 181.76015 * 29 16 15 52 52 H 1.09003 * 109.45929 * 301.73297 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9431 1.3860 -1.2493 6 6 2.0564 1.4307 -2.4953 7 6 2.9432 1.3859 1.2492 8 6 2.0698 1.4298 2.4766 9 8 0.8627 1.3998 2.3633 10 7 2.6303 1.5035 3.7001 11 6 1.7812 1.5456 4.8933 12 1 0.8728 2.1066 4.6740 13 6 1.4130 0.1188 5.3093 14 6 0.5761 0.1690 6.5906 15 6 1.3690 0.8887 7.6841 16 7 1.6963 2.2490 7.2382 17 6 2.3366 3.0161 8.3150 18 6 3.6792 2.4103 8.6334 19 8 4.0650 1.4358 8.0231 20 7 4.4518 2.9521 9.5957 21 6 5.6731 2.4007 9.8858 22 1 6.0162 1.5325 9.3429 23 6 6.4721 2.9628 10.8740 24 7 6.0569 4.0225 11.5309 25 14 8.1364 2.2119 11.2687 26 1 8.9925 2.2406 10.0557 27 1 8.7871 2.9920 12.3517 28 1 7.9528 0.8065 11.7119 29 6 2.5391 2.2254 6.0359 30 1 -0.5399 0.9354 0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 3.5541 2.2876 -1.2056 34 1 3.5906 0.5103 -1.2951 35 1 1.4091 2.3064 -2.4494 36 1 2.6831 1.4880 -3.3853 37 1 1.4455 0.5291 -2.5389 38 1 3.5542 2.2876 1.2056 39 1 3.5906 0.5103 1.2951 40 1 3.5956 1.5278 3.7908 41 1 2.3224 -0.4541 5.4905 42 1 0.8353 -0.3545 4.5154 43 1 0.3468 -0.8458 6.9155 44 1 -0.3513 0.7086 6.3986 45 1 2.2897 0.3410 7.8852 46 1 0.7702 0.9388 8.5935 47 1 1.7063 2.9902 9.2039 48 1 2.4709 4.0493 7.9947 49 1 4.1435 3.7318 10.0836 50 1 6.6145 4.4145 12.2209 51 1 2.7903 3.2463 5.7484 52 1 3.4543 1.6714 6.2448 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690044220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:43 Heat of formation + Delta-G solvation = -67.499163 kcal Electronic energy + Delta-G solvation = -29771.437670 eV Core-core repulsion = 25770.578569 eV Total energy + Delta-G solvation = -4000.859101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.17074 -39.24140 -37.54133 -36.67032 -34.59237 -33.88778 -32.45937 -31.90980 -31.34542 -30.84312 -29.05717 -27.32134 -25.00677 -24.70259 -22.73491 -22.45426 -21.79974 -20.36210 -19.88418 -19.60339 -19.17505 -17.91593 -17.01045 -16.25884 -16.03507 -15.66646 -15.21564 -14.87403 -14.72271 -14.68223 -14.42681 -14.21523 -14.12616 -13.92281 -13.61992 -13.39174 -13.34413 -12.99577 -12.81538 -12.38379 -12.34961 -12.03911 -11.88467 -11.58930 -11.53100 -11.41313 -11.27813 -11.17188 -11.02675 -10.85715 -10.66852 -10.59417 -10.52412 -10.49539 -10.31215 -10.23912 -9.80481 -9.52169 -9.26012 -9.18519 -8.87801 -8.06104 -7.44756 -6.51043 -3.92718 2.35377 2.73892 3.11564 3.18513 3.19224 3.22853 3.76341 4.09284 4.36451 4.54941 4.57898 4.67730 4.91825 5.00432 5.03454 5.08132 5.15110 5.16466 5.20194 5.26132 5.28056 5.32464 5.43432 5.50708 5.63058 5.67875 5.72197 5.76105 5.80245 5.83428 5.87184 5.95020 5.99156 6.00728 6.09715 6.12739 6.14062 6.21995 6.32673 6.39270 6.53732 6.60039 6.65073 6.72936 6.84625 7.32550 7.43307 7.45100 7.61420 7.94769 8.32813 8.49594 9.06764 9.43054 9.93288 10.65205 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016495 B = 0.002213 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.106944 B =12647.678212 C =13702.592402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.151 4.151 3 C -0.043 4.043 4 H 0.081 0.919 5 C -0.117 4.117 6 C -0.151 4.151 7 C -0.136 4.136 8 C 0.512 3.488 9 O -0.534 6.534 10 N -0.726 5.726 11 C 0.153 3.847 12 H 0.088 0.912 13 C -0.125 4.125 14 C -0.109 4.109 15 C 0.040 3.960 16 N -0.510 5.510 17 C 0.042 3.958 18 C 0.405 3.595 19 O -0.595 6.595 20 N -0.554 5.554 21 C -0.304 4.304 22 H 0.102 0.898 23 C 0.024 3.976 24 N -0.897 5.897 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.273 1.273 29 C 0.028 3.972 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.399 0.601 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.393 0.607 50 H 0.274 0.726 51 H 0.065 0.935 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.672 -3.642 -19.266 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.062 4.062 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.177 4.177 8 C 0.298 3.702 9 O -0.411 6.411 10 N -0.377 5.377 11 C 0.048 3.952 12 H 0.106 0.894 13 C -0.164 4.164 14 C -0.147 4.147 15 C -0.088 4.088 16 N -0.233 5.233 17 C -0.090 4.090 18 C 0.191 3.809 19 O -0.483 6.483 20 N -0.189 5.189 21 C -0.434 4.434 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.537 5.537 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.199 1.199 29 C -0.100 4.100 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.233 0.767 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.227 0.773 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.647 -3.937 -19.702 21.873 hybrid contribution 1.994 -0.205 1.065 2.269 sum -6.653 -4.142 -18.637 20.218 Atomic orbital electron populations 1.23678 0.95920 1.01234 0.99216 1.22614 0.95980 0.97041 1.01305 1.20143 0.96539 0.97068 0.92465 0.90091 1.21547 0.97872 1.01978 0.94035 1.21756 0.99822 1.02123 0.97119 1.21736 0.98758 1.04333 0.92826 1.20607 0.89216 0.75898 0.84487 1.90696 1.14724 1.49018 1.86626 1.46101 1.10501 1.75215 1.05895 1.20882 0.94132 0.96396 0.83756 0.89438 1.21896 1.00190 0.96772 0.97534 1.21483 0.98714 0.99843 0.94681 1.22271 1.00235 0.89425 0.96898 1.62332 1.41976 1.14913 1.04044 1.22043 0.93249 0.98266 0.95405 1.21098 0.88111 0.87444 0.84264 1.90374 1.74977 1.29290 1.53631 1.42063 1.16796 1.28177 1.31896 1.19653 0.93216 1.12537 1.17955 0.88029 1.25300 1.00132 0.96084 0.96284 1.69602 1.38759 1.21206 1.24167 0.85920 0.81275 0.78913 0.78134 1.19890 1.20878 1.19871 1.22568 0.97376 1.00872 0.89216 0.88655 0.89332 0.88206 0.91800 0.91854 0.92812 0.92966 0.92425 0.88833 0.88953 0.76706 0.91936 0.92045 0.91733 0.91616 0.91314 0.91597 0.89185 0.89281 0.77336 0.91656 0.91662 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 13.22 29.02 0.38 -1.33 16 2 C -0.15 -1.48 6.76 -36.03 -0.24 -1.72 16 3 C -0.04 -0.38 1.82 -91.78 -0.17 -0.55 16 4 H 0.08 0.84 7.60 -51.93 -0.39 0.44 16 5 C -0.12 -0.82 5.39 -26.73 -0.14 -0.96 16 6 C -0.15 -1.04 9.73 37.16 0.36 -0.68 16 7 C -0.14 -1.18 5.16 -27.88 -0.14 -1.33 16 8 C 0.51 6.26 7.54 -10.98 -0.08 6.18 16 9 O -0.53 -8.19 13.83 5.56 0.08 -8.11 16 10 N -0.73 -8.82 5.08 -53.72 -0.27 -9.10 16 11 C 0.15 2.19 2.62 -67.85 -0.18 2.01 16 12 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.13 -1.78 5.58 -26.61 -0.15 -1.93 16 14 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 15 C 0.04 0.64 5.09 -3.83 -0.02 0.62 16 16 N -0.51 -8.34 4.86 -236.11 -1.15 -9.49 16 17 C 0.04 0.73 5.86 -4.98 -0.03 0.70 16 18 C 0.41 8.90 7.20 -10.99 -0.08 8.82 16 19 O -0.60 -14.46 11.20 5.55 0.06 -14.40 16 20 N -0.55 -13.42 5.29 -10.96 -0.06 -13.47 16 21 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 22 H 0.10 2.85 7.16 -52.49 -0.38 2.47 16 23 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 24 N -0.90 -23.74 13.05 55.50 0.72 -23.02 16 25 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 29 C 0.03 0.45 4.44 -3.83 -0.02 0.43 16 30 H 0.10 1.06 7.83 -52.48 -0.41 0.65 16 31 H 0.09 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.10 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.40 4.19 8.60 -40.82 -0.35 3.84 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 1.32 6.00 -51.93 -0.31 1.01 16 46 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 47 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 48 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 49 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 50 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 51 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 52 H 0.09 1.70 5.36 -51.93 -0.28 1.42 16 LS Contribution 409.51 15.07 6.17 6.17 Total: -1.00 -30.02 409.51 -9.49 -39.50 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -9.11 Total: 15.64 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.91 Total: 0.84 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.75 Total: -55.08 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.14 Total: -22.51 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.02 -9.49 -39.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690044220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.994 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds