Wall clock time and date at job start Tue Mar 31 2020 20:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50705 * 120.00206 * 2 1 4 4 H 1.09004 * 109.46555 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47390 * 240.00562 * 3 2 1 6 6 C 1.53000 * 109.47060 * 64.99953 * 5 3 2 7 7 C 1.52997 * 109.47056 * 119.99970 * 3 2 1 8 8 C 1.50695 * 109.47187 * 185.00249 * 7 3 2 9 9 O 1.21283 * 119.99889 * 0.02562 * 8 7 3 10 10 N 1.34773 * 120.00447 * 179.97438 * 8 7 3 11 11 C 1.47023 * 125.64554 * 0.02964 * 10 8 7 12 12 C 1.54326 * 107.27185 * 181.01981 * 11 10 8 13 13 C 1.55152 * 102.94224 * 22.19257 * 12 11 10 14 14 H 1.09003 * 111.00542 * 82.57002 * 13 12 11 15 15 C 1.52999 * 111.00322 * 206.42532 * 13 12 11 16 16 N 1.46899 * 109.46896 * 293.54548 * 15 13 12 17 17 C 1.46901 * 110.99796 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47214 * 180.02562 * 17 16 15 19 19 O 1.21290 * 119.99943 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00117 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99897 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00210 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00191 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00341 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99866 * 0.02562 * 23 21 20 26 26 H 1.48492 * 109.47209 * 89.99580 * 25 23 21 27 27 H 1.48495 * 109.47160 * 209.99855 * 25 23 21 28 28 H 1.48508 * 109.46739 * 329.99627 * 25 23 21 29 29 C 1.47422 * 125.65499 * 179.71756 * 10 8 7 30 30 H 1.08002 * 119.99911 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00371 * 359.97438 * 1 2 3 32 32 H 1.08006 * 120.00423 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47153 * 304.99634 * 5 3 2 34 34 H 1.09001 * 109.46832 * 184.99825 * 5 3 2 35 35 H 1.08992 * 109.47399 * 59.99823 * 6 5 3 36 36 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 37 37 H 1.09001 * 109.47194 * 299.99650 * 6 5 3 38 38 H 1.08995 * 109.47546 * 305.00648 * 7 3 2 39 39 H 1.08997 * 109.46769 * 65.00537 * 7 3 2 40 40 H 1.08998 * 109.88499 * 300.43689 * 11 10 8 41 41 H 1.09004 * 109.88629 * 61.44704 * 11 10 8 42 42 H 1.09000 * 110.71709 * 140.55647 * 12 11 10 43 43 H 1.09001 * 110.72058 * 263.64897 * 12 11 10 44 44 H 1.08994 * 109.47356 * 53.54817 * 15 13 12 45 45 H 1.09003 * 109.46882 * 173.54983 * 15 13 12 46 46 H 1.00897 * 111.00194 * 56.04793 * 16 15 13 47 47 H 1.09001 * 109.47296 * 300.00122 * 17 16 15 48 48 H 1.09004 * 109.47573 * 59.99984 * 17 16 15 49 49 H 0.96998 * 120.00310 * 359.97438 * 20 18 17 50 50 H 0.97000 * 120.00451 * 179.97438 * 24 23 21 51 51 H 1.09001 * 110.36792 * 274.75706 * 29 10 8 52 52 H 1.09007 * 110.36569 * 37.06747 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3863 -1.2493 6 6 2.0562 1.4309 -2.4953 7 6 2.9431 1.3861 1.2492 8 6 3.6019 2.7399 1.3128 9 8 3.3886 3.5595 0.4446 10 7 4.4275 3.0404 2.3348 11 6 4.7722 2.1456 3.4493 12 6 5.7221 2.9233 4.3844 13 6 5.4112 4.4043 4.0420 14 1 4.5297 4.7530 4.5802 15 6 6.6178 5.2992 4.3320 16 7 6.8687 5.3291 5.7791 17 6 8.0226 6.1812 6.0958 18 6 8.2491 6.1868 7.5857 19 8 7.5206 5.5445 8.3123 20 7 9.2605 6.9063 8.1109 21 6 9.4662 6.9117 9.4664 22 1 8.8180 6.3391 10.1132 23 6 10.5092 7.6530 10.0079 24 7 10.7067 7.6579 11.3070 25 14 11.6308 8.6429 8.8890 26 1 11.0775 10.0102 8.7176 27 1 12.9838 8.7287 9.4948 28 1 11.7225 7.9764 7.5650 29 6 5.1395 4.3183 2.5172 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9352 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5905 0.5106 -1.2953 34 1 3.5539 2.2880 -1.2055 35 1 1.4088 2.3065 -2.4493 36 1 2.6829 1.4883 -3.3853 37 1 1.4454 0.5292 -2.5390 38 1 2.3279 1.2394 2.1369 39 1 3.7084 0.6113 1.2055 40 1 3.8693 1.8624 3.9903 41 1 5.2708 1.2542 3.0685 42 1 5.4928 2.7126 5.4289 43 1 6.7623 2.6837 4.1634 44 1 7.4948 4.9041 3.8193 45 1 6.4142 6.3097 3.9776 46 1 6.9964 4.3968 6.1433 47 1 8.9095 5.7926 5.5953 48 1 7.8284 7.1978 5.7537 49 1 9.8429 7.4202 7.5300 50 1 11.4351 8.1751 11.6850 51 1 6.0775 4.3126 1.9620 52 1 4.5131 5.1507 2.1963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690731681.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:21 Heat of formation + Delta-G solvation = -61.051066 kcal Electronic energy + Delta-G solvation = -28332.988584 eV Core-core repulsion = 24332.409094 eV Total energy + Delta-G solvation = -4000.579491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.56130 -38.76351 -38.26046 -36.84140 -35.48189 -33.94203 -32.28731 -32.14925 -31.66144 -30.57654 -29.74010 -27.49720 -25.53493 -24.35928 -23.23091 -23.02892 -22.09840 -20.54726 -20.04937 -19.39109 -19.37167 -18.36842 -17.38675 -16.92719 -16.04456 -15.85940 -15.62042 -15.32183 -15.08803 -14.86591 -14.68477 -14.40559 -14.09817 -14.05335 -13.69794 -13.42268 -13.30317 -13.21683 -12.94392 -12.80532 -12.75122 -12.42113 -12.29901 -12.24265 -12.04284 -11.70524 -11.55669 -11.50848 -11.27438 -11.18422 -11.09207 -10.98411 -10.93860 -10.89526 -10.61199 -10.00040 -9.98822 -9.72153 -9.59219 -8.94505 -8.62559 -8.22414 -8.17559 -6.32894 -3.84470 1.86932 2.34676 2.66930 3.00797 3.05717 3.13858 3.71606 3.90285 4.08380 4.13113 4.25287 4.33995 4.44133 4.59675 4.65467 4.75353 4.82614 4.86863 4.96051 4.97173 5.03152 5.07224 5.13566 5.16045 5.20147 5.28549 5.37743 5.41478 5.46085 5.49231 5.56826 5.57708 5.60288 5.62914 5.65140 5.77857 5.78791 5.84398 5.90618 5.95232 6.01010 6.05280 6.09596 6.24663 6.39944 7.03315 7.20471 7.52439 7.56434 7.87703 8.12531 8.57776 8.93051 9.40532 9.80504 10.80175 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036444 B = 0.001517 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.124054 B =18455.120601 C =18965.347973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.146 4.146 3 C -0.046 4.046 4 H 0.082 0.918 5 C -0.122 4.122 6 C -0.148 4.148 7 C -0.130 4.130 8 C 0.528 3.472 9 O -0.538 6.538 10 N -0.620 5.620 11 C 0.101 3.899 12 C -0.133 4.133 13 C -0.097 4.097 14 H 0.097 0.903 15 C 0.070 3.930 16 N -0.668 5.668 17 C 0.048 3.952 18 C 0.449 3.551 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.111 3.889 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.030 0.970 45 H 0.076 0.924 46 H 0.350 0.650 47 H 0.044 0.956 48 H 0.088 0.912 49 H 0.371 0.629 50 H 0.273 0.727 51 H 0.068 0.932 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.544 -14.082 -25.345 32.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.164 4.164 3 C -0.065 4.065 4 H 0.100 0.900 5 C -0.159 4.159 6 C -0.205 4.205 7 C -0.169 4.169 8 C 0.317 3.683 9 O -0.415 6.415 10 N -0.354 5.354 11 C -0.022 4.022 12 C -0.171 4.171 13 C -0.116 4.116 14 H 0.115 0.885 15 C -0.060 4.060 16 N -0.300 5.300 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.012 4.012 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.049 0.951 45 H 0.094 0.906 46 H 0.170 0.830 47 H 0.062 0.938 48 H 0.106 0.894 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.539 -13.536 -25.062 31.980 hybrid contribution 1.847 0.209 -0.887 2.059 sum -12.692 -13.327 -25.949 31.813 Atomic orbital electron populations 1.23875 0.95945 1.01877 1.01042 1.22910 0.95927 0.97927 0.99672 1.20176 0.96893 0.95817 0.93624 0.89959 1.21657 0.98060 1.02769 0.93427 1.21726 0.99781 1.01614 0.97380 1.21679 1.00114 0.94702 1.00437 1.20368 0.78073 0.89687 0.80123 1.90686 1.62264 1.50666 1.37885 1.48555 1.46157 1.16435 1.24291 1.22082 0.99195 0.93355 0.87593 1.22750 0.99468 0.94562 1.00271 1.22418 0.99971 0.94862 0.94369 0.88468 1.21852 0.95336 0.99756 0.89046 1.60016 1.41210 1.17557 1.11257 1.21709 0.92080 0.99028 0.95679 1.19702 0.83462 0.84371 0.88952 1.90561 1.47310 1.45533 1.61304 1.42207 1.28300 1.44167 1.08291 1.19434 1.14514 1.28743 0.80782 0.86276 1.25036 0.97490 0.97728 0.95847 1.69618 1.31378 1.40964 1.10125 0.86670 0.81256 0.81013 0.80421 1.19579 1.20187 1.19546 1.22273 0.96735 0.86450 0.95738 0.88485 0.88568 0.87390 0.92622 0.89871 0.92786 0.93046 0.92938 0.88765 0.88845 0.91099 0.91325 0.89001 0.90526 0.95146 0.90589 0.82985 0.93760 0.89394 0.79678 0.91597 0.91378 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.11 14.32 29.02 0.42 -0.70 16 2 C -0.15 -0.89 7.75 -36.02 -0.28 -1.16 16 3 C -0.05 -0.34 1.80 -91.77 -0.17 -0.51 16 4 H 0.08 0.74 7.60 -51.93 -0.39 0.34 16 5 C -0.12 -0.97 5.18 -26.73 -0.14 -1.11 16 6 C -0.15 -1.09 9.73 37.16 0.36 -0.73 16 7 C -0.13 -0.89 4.35 -27.89 -0.12 -1.01 16 8 C 0.53 5.25 7.53 -10.99 -0.08 5.17 16 9 O -0.54 -7.13 14.24 5.56 0.08 -7.05 16 10 N -0.62 -5.54 3.32 -170.38 -0.57 -6.11 16 11 C 0.10 0.68 6.48 -3.06 -0.02 0.66 16 12 C -0.13 -1.02 5.62 -24.90 -0.14 -1.16 16 13 C -0.10 -0.87 3.31 -88.36 -0.29 -1.17 16 14 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.07 0.72 5.19 -3.82 -0.02 0.70 16 16 N -0.67 -9.53 6.13 -115.06 -0.70 -10.24 16 17 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 18 C 0.45 9.97 7.82 -10.99 -0.09 9.88 16 19 O -0.57 -14.86 15.78 5.55 0.09 -14.78 16 20 N -0.59 -13.84 5.09 -10.96 -0.06 -13.90 16 21 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 25 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 29 C 0.11 1.02 6.38 -2.41 -0.02 1.00 16 30 H 0.10 0.46 8.06 -52.49 -0.42 0.04 16 31 H 0.10 0.57 7.83 -52.49 -0.41 0.16 16 32 H 0.11 0.55 8.06 -52.48 -0.42 0.13 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.85 5.88 -51.93 -0.31 0.55 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 0.35 7.38 -51.93 -0.38 -0.03 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 43 H 0.08 0.57 8.02 -51.93 -0.42 0.15 16 44 H 0.03 0.29 8.11 -51.93 -0.42 -0.13 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.35 5.10 7.65 -39.29 -0.30 4.80 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 50 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 51 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 52 H 0.08 0.81 8.03 -51.93 -0.42 0.40 16 LS Contribution 418.06 15.07 6.30 6.30 Total: -1.00 -33.69 418.06 -8.84 -42.53 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -9.18 Total: 10.66 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.86 Total: 2.92 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.55 Total: -55.01 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.17 Total: -21.83 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.69 -8.84 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690731681.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.525 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds