Wall clock time and date at job start Tue Mar 31 2020 20:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50705 * 120.00206 * 2 1 4 4 H 1.09004 * 109.46555 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47390 * 240.00562 * 3 2 1 6 6 C 1.53000 * 109.47060 * 64.99953 * 5 3 2 7 7 C 1.52997 * 109.47056 * 119.99970 * 3 2 1 8 8 C 1.50695 * 109.47187 * 185.00249 * 7 3 2 9 9 O 1.21283 * 119.99889 * 0.02562 * 8 7 3 10 10 N 1.34773 * 120.00447 * 179.97438 * 8 7 3 11 11 C 1.47023 * 125.64554 * 0.02964 * 10 8 7 12 12 C 1.54326 * 107.27185 * 181.01981 * 11 10 8 13 13 C 1.55152 * 102.94224 * 22.19257 * 12 11 10 14 14 H 1.09003 * 111.00542 * 82.57002 * 13 12 11 15 15 C 1.52999 * 111.00322 * 206.42532 * 13 12 11 16 16 N 1.46899 * 109.46896 * 293.54548 * 15 13 12 17 17 C 1.46901 * 110.99796 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47214 * 180.02562 * 17 16 15 19 19 O 1.21290 * 119.99943 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00117 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99897 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00210 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00191 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00341 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99866 * 0.02562 * 23 21 20 26 26 H 1.48492 * 109.47209 * 89.99580 * 25 23 21 27 27 H 1.48495 * 109.47160 * 209.99855 * 25 23 21 28 28 H 1.48508 * 109.46739 * 329.99627 * 25 23 21 29 29 C 1.47422 * 125.65499 * 179.71756 * 10 8 7 30 30 H 1.08002 * 119.99911 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00371 * 359.97438 * 1 2 3 32 32 H 1.08006 * 120.00423 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47153 * 304.99634 * 5 3 2 34 34 H 1.09001 * 109.46832 * 184.99825 * 5 3 2 35 35 H 1.08992 * 109.47399 * 59.99823 * 6 5 3 36 36 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 37 37 H 1.09001 * 109.47194 * 299.99650 * 6 5 3 38 38 H 1.08995 * 109.47546 * 305.00648 * 7 3 2 39 39 H 1.08997 * 109.46769 * 65.00537 * 7 3 2 40 40 H 1.08998 * 109.88499 * 300.43689 * 11 10 8 41 41 H 1.09004 * 109.88629 * 61.44704 * 11 10 8 42 42 H 1.09000 * 110.71709 * 140.55647 * 12 11 10 43 43 H 1.09001 * 110.72058 * 263.64897 * 12 11 10 44 44 H 1.08994 * 109.47356 * 53.54817 * 15 13 12 45 45 H 1.09003 * 109.46882 * 173.54983 * 15 13 12 46 46 H 1.00897 * 111.00194 * 56.04793 * 16 15 13 47 47 H 1.09001 * 109.47296 * 300.00122 * 17 16 15 48 48 H 1.09004 * 109.47573 * 59.99984 * 17 16 15 49 49 H 0.96998 * 120.00310 * 359.97438 * 20 18 17 50 50 H 0.97000 * 120.00451 * 179.97438 * 24 23 21 51 51 H 1.09001 * 110.36792 * 274.75706 * 29 10 8 52 52 H 1.09007 * 110.36569 * 37.06747 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3863 -1.2493 6 6 2.0562 1.4309 -2.4953 7 6 2.9431 1.3861 1.2492 8 6 3.6019 2.7399 1.3128 9 8 3.3886 3.5595 0.4446 10 7 4.4275 3.0404 2.3348 11 6 4.7722 2.1456 3.4493 12 6 5.7221 2.9233 4.3844 13 6 5.4112 4.4043 4.0420 14 1 4.5297 4.7530 4.5802 15 6 6.6178 5.2992 4.3320 16 7 6.8687 5.3291 5.7791 17 6 8.0226 6.1812 6.0958 18 6 8.2491 6.1868 7.5857 19 8 7.5206 5.5445 8.3123 20 7 9.2605 6.9063 8.1109 21 6 9.4662 6.9117 9.4664 22 1 8.8180 6.3391 10.1132 23 6 10.5092 7.6530 10.0079 24 7 10.7067 7.6579 11.3070 25 14 11.6308 8.6429 8.8890 26 1 11.0775 10.0102 8.7176 27 1 12.9838 8.7287 9.4948 28 1 11.7225 7.9764 7.5650 29 6 5.1395 4.3183 2.5172 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9352 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5905 0.5106 -1.2953 34 1 3.5539 2.2880 -1.2055 35 1 1.4088 2.3065 -2.4493 36 1 2.6829 1.4883 -3.3853 37 1 1.4454 0.5292 -2.5390 38 1 2.3279 1.2394 2.1369 39 1 3.7084 0.6113 1.2055 40 1 3.8693 1.8624 3.9903 41 1 5.2708 1.2542 3.0685 42 1 5.4928 2.7126 5.4289 43 1 6.7623 2.6837 4.1634 44 1 7.4948 4.9041 3.8193 45 1 6.4142 6.3097 3.9776 46 1 6.9964 4.3968 6.1433 47 1 8.9095 5.7926 5.5953 48 1 7.8284 7.1978 5.7537 49 1 9.8429 7.4202 7.5300 50 1 11.4351 8.1751 11.6850 51 1 6.0775 4.3126 1.9620 52 1 4.5131 5.1507 2.1963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690731681.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:20 Heat of formation + Delta-G solvation = -84.855203 kcal Electronic energy + Delta-G solvation = -28334.020809 eV Core-core repulsion = 24332.409094 eV Total energy + Delta-G solvation = -4001.611716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.27843 -40.29870 -39.21684 -37.50802 -36.60303 -35.84189 -33.75340 -33.11279 -32.66053 -31.20336 -30.45192 -28.75310 -26.72000 -25.51386 -24.16059 -23.86320 -22.66676 -21.40146 -21.15925 -20.55477 -20.23218 -20.04299 -18.07299 -18.02350 -17.33259 -16.84821 -16.72679 -16.53350 -15.99575 -15.77165 -15.62908 -15.36573 -15.04272 -15.00361 -14.76073 -14.64165 -14.37348 -14.27144 -13.97454 -13.77220 -13.55566 -13.45625 -13.35043 -13.25707 -12.99036 -12.81176 -12.68761 -12.40097 -12.14051 -12.09027 -12.00735 -11.94863 -11.69644 -11.66704 -11.59520 -11.54432 -11.50136 -10.73466 -10.42616 -10.23742 -10.20129 -9.64938 -9.30363 -8.40418 -6.01312 1.31058 1.36822 1.41274 1.45400 1.62244 1.97046 2.00682 2.23898 2.73273 3.16189 3.32375 3.50333 3.61515 3.76973 3.81986 3.97870 4.08560 4.15265 4.20341 4.30526 4.36178 4.39193 4.40575 4.42513 4.46013 4.53409 4.56310 4.59956 4.62840 4.75157 4.78717 4.82637 4.93082 4.95160 4.98936 5.03660 5.10039 5.16122 5.19066 5.27692 5.37874 5.42800 5.44229 5.53543 5.77740 5.91474 5.94915 6.05676 6.43253 6.52201 6.60879 6.89214 7.15396 7.41115 7.97626 8.77167 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036444 B = 0.001517 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.124054 B =18455.120601 C =18965.347973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.146 4.146 3 C -0.044 4.044 4 H 0.059 0.941 5 C -0.120 4.120 6 C -0.146 4.146 7 C -0.123 4.123 8 C 0.521 3.479 9 O -0.579 6.579 10 N -0.622 5.622 11 C 0.101 3.899 12 C -0.129 4.129 13 C -0.090 4.090 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.686 5.686 17 C 0.062 3.938 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.055 0.945 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.259 1.259 27 H -0.276 1.276 28 H -0.230 1.230 29 C 0.113 3.887 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.050 0.950 45 H 0.080 0.920 46 H 0.347 0.653 47 H 0.078 0.922 48 H 0.113 0.887 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.075 0.925 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.362 -14.786 -28.185 34.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.164 4.164 3 C -0.063 4.063 4 H 0.077 0.923 5 C -0.157 4.157 6 C -0.203 4.203 7 C -0.162 4.162 8 C 0.312 3.688 9 O -0.460 6.460 10 N -0.355 5.355 11 C -0.021 4.021 12 C -0.167 4.167 13 C -0.110 4.110 14 H 0.099 0.901 15 C -0.054 4.054 16 N -0.319 5.319 17 C -0.071 4.071 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.153 1.153 29 C -0.010 4.010 30 H 0.129 0.871 31 H 0.107 0.893 32 H 0.143 0.857 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.166 0.834 47 H 0.096 0.904 48 H 0.131 0.869 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.093 0.907 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.365 -14.259 -27.919 34.079 hybrid contribution 1.357 0.373 0.063 1.408 sum -12.008 -13.886 -27.856 33.361 Atomic orbital electron populations 1.23996 0.96084 1.02242 1.00662 1.22906 0.95913 0.97641 0.99969 1.20106 0.96568 0.95907 0.93740 0.92283 1.21606 0.98100 1.02033 0.93970 1.21707 0.99700 1.01489 0.97408 1.21702 1.00538 0.93301 1.00649 1.20948 0.77829 0.90431 0.79615 1.90671 1.63689 1.52123 1.39499 1.48665 1.45689 1.16640 1.24527 1.22221 0.99705 0.93393 0.86807 1.22735 1.00212 0.93518 1.00267 1.22264 0.98942 0.95708 0.94050 0.90077 1.21881 0.96382 1.00511 0.86667 1.59997 1.40787 1.17285 1.13868 1.21629 0.94166 1.01092 0.90184 1.21015 0.81602 0.82029 0.91748 1.90540 1.48705 1.47059 1.63526 1.42038 1.29441 1.45205 1.06630 1.19017 1.14735 1.29485 0.82651 0.92641 1.26104 0.98936 0.98504 0.97738 1.69801 1.32520 1.42255 1.12941 0.85369 0.77702 0.79145 0.79322 1.18324 1.20090 1.15317 1.22198 0.96744 0.86385 0.95675 0.87107 0.89309 0.85728 0.91260 0.92440 0.93974 0.92697 0.92009 0.87366 0.86571 0.90054 0.89148 0.89443 0.89701 0.93229 0.90126 0.83393 0.90383 0.86938 0.77466 0.91172 0.90688 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 14.32 67.79 0.97 -1.00 16 2 C -0.15 -1.49 7.75 25.66 0.20 -1.29 16 3 C -0.04 -0.62 1.80 -11.54 -0.02 -0.64 16 4 H 0.06 1.09 7.60 -2.39 -0.02 1.07 16 5 C -0.12 -1.83 5.18 30.59 0.16 -1.67 16 6 C -0.15 -2.09 9.73 71.98 0.70 -1.39 16 7 C -0.12 -1.46 4.35 29.85 0.13 -1.33 16 8 C 0.52 9.98 7.53 87.66 0.66 10.64 16 9 O -0.58 -15.73 14.24 -3.04 -0.04 -15.78 16 10 N -0.62 -10.24 3.32 -811.36 -2.70 -12.94 16 11 C 0.10 1.11 6.48 86.73 0.56 1.67 16 12 C -0.13 -1.72 5.62 31.78 0.18 -1.54 16 13 C -0.09 -1.50 3.31 -9.33 -0.03 -1.53 16 14 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 15 C 0.07 1.35 5.19 86.30 0.45 1.80 16 16 N -0.69 -18.26 6.13 -517.93 -3.17 -21.43 16 17 C 0.06 1.76 6.17 85.56 0.53 2.29 16 18 C 0.45 19.63 7.82 87.66 0.69 20.32 16 19 O -0.61 -33.24 15.78 -3.06 -0.05 -33.29 16 20 N -0.59 -27.33 5.09 -306.99 -1.56 -28.89 16 21 C -0.33 -19.13 10.16 84.04 0.85 -18.27 16 22 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.93 -55.98 13.96 21.66 0.30 -55.68 16 25 Si 0.96 38.23 27.74 68.60 1.90 40.14 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 27 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 28 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 29 C 0.11 1.95 6.38 86.93 0.55 2.50 16 30 H 0.11 0.82 8.06 -2.91 -0.02 0.80 16 31 H 0.09 1.02 7.83 -2.91 -0.02 1.00 16 32 H 0.12 0.89 8.06 -2.91 -0.02 0.86 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 1.20 5.88 -2.39 -0.01 1.19 16 35 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.76 7.38 -2.39 -0.02 0.74 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.09 1.27 8.12 -2.39 -0.02 1.25 16 43 H 0.08 1.01 8.02 -2.39 -0.02 0.99 16 44 H 0.05 0.74 8.11 -2.39 -0.02 0.73 16 45 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 46 H 0.35 9.63 7.65 -89.70 -0.69 8.94 16 47 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 49 H 0.39 14.80 5.76 -92.71 -0.53 14.27 16 50 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 51 H 0.07 1.19 8.04 -2.39 -0.02 1.17 16 52 H 0.06 1.31 8.03 -2.38 -0.02 1.29 16 Total: -1.00 -79.65 418.06 1.35 -78.31 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: -0.38 Total: 39.31 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 7.04 Total: 10.24 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -7.13 Total: -118.93 kcal Atomic # 8 Polarization: -48.97 SS G_CDS: -0.09 Total: -49.07 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.14 kcal Total: -79.65 1.35 -78.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690731681.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.549 kcal (2) G-P(sol) polarization free energy of solvation -79.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds