Wall clock time and date at job start Tue Mar 31 2020 20:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 119.99782 * 2 1 4 4 H 1.09001 * 109.47374 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47174 * 120.00031 * 3 2 1 6 6 C 1.52999 * 109.47109 * 185.49729 * 5 3 2 7 7 C 1.53003 * 109.47052 * 240.00065 * 3 2 1 8 8 C 1.50697 * 109.47342 * 66.48676 * 7 3 2 9 9 O 1.21284 * 119.99753 * 356.04123 * 8 7 3 10 10 N 1.34779 * 120.00046 * 176.04078 * 8 7 3 11 11 C 1.47286 * 125.79399 * 0.02562 * 10 8 7 12 12 C 1.54317 * 107.30604 * 178.92654 * 11 10 8 13 13 C 1.55157 * 102.94034 * 337.80983 * 12 11 10 14 14 H 1.08993 * 111.00825 * 277.42826 * 13 12 11 15 15 C 1.53002 * 111.03555 * 153.59366 * 13 12 11 16 16 N 1.46908 * 109.47195 * 72.78580 * 15 13 12 17 17 C 1.46901 * 111.00056 * 180.02562 * 16 15 13 18 18 C 1.50694 * 109.47037 * 180.02562 * 17 16 15 19 19 O 1.21297 * 120.00383 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99978 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00379 * 179.97438 * 20 18 17 22 22 H 1.08008 * 119.99409 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00529 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99749 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00146 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47103 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47132 * 120.00242 * 25 23 21 28 28 H 1.48503 * 109.47190 * 240.00072 * 25 23 21 29 29 C 1.47427 * 125.64539 * 179.97438 * 10 8 7 30 30 H 1.07999 * 120.00155 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.99675 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.00155 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47401 * 305.50153 * 5 3 2 34 34 H 1.09005 * 109.47184 * 65.49833 * 5 3 2 35 35 H 1.08993 * 109.47228 * 54.53989 * 6 5 3 36 36 H 1.09008 * 109.46930 * 174.53454 * 6 5 3 37 37 H 1.08999 * 109.47276 * 294.53471 * 6 5 3 38 38 H 1.09008 * 109.47061 * 306.48688 * 7 3 2 39 39 H 1.09004 * 109.47068 * 186.49057 * 7 3 2 40 40 H 1.08999 * 109.86124 * 59.49418 * 11 10 8 41 41 H 1.09008 * 110.00046 * 298.43049 * 11 10 8 42 42 H 1.09004 * 110.71832 * 219.45314 * 12 11 10 43 43 H 1.08994 * 110.72804 * 96.18153 * 12 11 10 44 44 H 1.08995 * 109.47220 * 192.78707 * 15 13 12 45 45 H 1.09007 * 109.47222 * 312.78977 * 15 13 12 46 46 H 1.00903 * 110.99986 * 303.95522 * 16 15 13 47 47 H 1.09002 * 109.46737 * 300.00306 * 17 16 15 48 48 H 1.08996 * 109.47081 * 59.99873 * 17 16 15 49 49 H 0.97000 * 120.00471 * 359.97438 * 20 18 17 50 50 H 0.96999 * 120.00300 * 179.97438 * 24 23 21 51 51 H 1.09001 * 110.36308 * 85.26281 * 29 10 8 52 52 H 1.09001 * 110.36494 * 323.04956 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1337 -0.0005 5 6 2.9430 1.3863 1.2492 6 6 3.6021 2.7652 1.3202 7 6 2.9430 1.3862 -1.2493 8 6 2.0693 1.4669 -2.4745 9 8 0.8639 1.3879 -2.3660 10 7 2.6274 1.6268 -3.6908 11 6 4.0696 1.7365 -3.9692 12 6 4.2326 1.8796 -5.4971 13 6 2.9130 1.2751 -6.0454 14 1 2.9740 0.1883 -6.0996 15 6 2.5618 1.8705 -7.4104 16 7 3.4743 1.3329 -8.4286 17 6 3.1666 1.8841 -9.7550 18 6 4.1204 1.3106 -10.7709 19 8 4.9731 0.5208 -10.4241 20 7 4.0262 1.6754 -12.0649 21 6 4.8943 1.1540 -12.9892 22 1 5.6541 0.4513 -12.6801 23 6 4.7968 1.5296 -14.3233 24 7 3.8727 2.3850 -14.6992 25 14 5.9801 0.8198 -15.5824 26 1 6.9188 -0.1129 -14.9087 27 1 5.2150 0.0860 -16.6222 28 1 6.7469 1.9217 -16.2174 29 6 1.8948 1.7202 -4.9667 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 2.3293 1.2307 2.1365 34 1 3.7139 0.6171 1.2013 35 1 2.8348 3.5376 1.2703 36 1 4.1506 2.8579 2.2577 37 1 4.2907 2.8823 0.4834 38 1 3.5718 0.4978 -1.3092 39 1 3.5730 2.2740 -1.1931 40 1 4.5827 0.8389 -3.6241 41 1 4.4803 2.6135 -3.4688 42 1 5.0929 1.3097 -5.8482 43 1 4.3227 2.9286 -5.7788 44 1 1.5355 1.6087 -7.6678 45 1 2.6609 2.9552 -7.3701 46 1 4.4366 1.5065 -8.1795 47 1 2.1444 1.6229 -10.0288 48 1 3.2701 2.9689 -9.7306 49 1 3.3441 2.3067 -12.3425 50 1 3.8048 2.6475 -15.6305 51 1 1.5762 2.7469 -5.1469 52 1 1.0335 1.0521 -4.9593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690731682.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:23 Heat of formation + Delta-G solvation = -88.817046 kcal Electronic energy + Delta-G solvation = -28397.936814 eV Core-core repulsion = 24396.153300 eV Total energy + Delta-G solvation = -4001.783514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.20285 -40.15986 -39.15689 -37.44924 -36.57376 -35.79767 -33.36260 -33.17769 -32.86767 -30.69207 -30.37962 -28.57337 -26.79321 -25.90063 -24.37308 -23.91660 -21.96081 -21.40729 -20.97300 -20.75558 -20.01292 -19.89354 -18.13893 -18.05292 -17.31327 -16.83030 -16.73129 -16.43955 -16.06989 -15.84480 -15.53578 -15.22895 -15.11717 -14.92742 -14.71672 -14.59043 -14.29076 -14.03306 -13.83173 -13.56002 -13.49066 -13.40010 -13.29626 -13.14792 -12.95309 -12.75334 -12.69430 -12.48228 -12.40107 -12.12367 -12.06283 -11.91097 -11.68087 -11.62250 -11.56265 -11.50427 -11.34452 -10.89165 -10.34205 -10.04499 -10.00849 -9.61270 -9.31547 -8.46291 -5.95045 1.37363 1.42855 1.51285 1.56951 1.70068 2.00263 2.05998 2.29910 2.91040 3.21261 3.41595 3.55258 3.63856 3.79094 3.86330 3.90479 4.00123 4.29319 4.32624 4.33867 4.36664 4.39069 4.42120 4.47835 4.49702 4.52760 4.58416 4.63314 4.64708 4.72466 4.75091 4.82793 4.91922 4.95979 5.00135 5.03442 5.14442 5.16947 5.22721 5.27931 5.35327 5.38873 5.41874 5.51786 5.81324 5.89179 6.02999 6.10702 6.44556 6.56495 6.60603 7.13271 7.21164 7.57071 8.12079 8.71292 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033474 B = 0.001506 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.264463 B =18582.060162 C =18904.488191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.154 4.154 3 C -0.042 4.042 4 H 0.060 0.940 5 C -0.110 4.110 6 C -0.156 4.156 7 C -0.123 4.123 8 C 0.517 3.483 9 O -0.575 6.575 10 N -0.624 5.624 11 C 0.102 3.898 12 C -0.129 4.129 13 C -0.090 4.090 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.682 5.682 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.270 1.270 29 C 0.114 3.886 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.047 0.953 46 H 0.347 0.653 47 H 0.102 0.898 48 H 0.069 0.931 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.071 0.929 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.419 3.135 30.099 30.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.172 4.172 3 C -0.061 4.061 4 H 0.079 0.921 5 C -0.148 4.148 6 C -0.213 4.213 7 C -0.162 4.162 8 C 0.308 3.692 9 O -0.454 6.454 10 N -0.358 5.358 11 C -0.020 4.020 12 C -0.167 4.167 13 C -0.109 4.109 14 H 0.099 0.901 15 C -0.055 4.055 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.198 1.198 28 H -0.196 1.196 29 C -0.009 4.009 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.166 0.834 47 H 0.120 0.880 48 H 0.086 0.914 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.089 0.911 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.932 2.081 30.193 30.326 hybrid contribution 0.076 0.784 -1.183 1.421 sum -1.856 2.865 29.010 29.210 Atomic orbital electron populations 1.23728 0.96563 1.01037 1.00549 1.22907 0.95910 0.98225 1.00171 1.20146 0.96406 0.95548 0.94030 0.92129 1.21496 0.98682 0.98590 0.96007 1.21856 1.00668 0.96238 1.02536 1.21783 0.98174 1.06163 0.90109 1.21039 0.88746 0.75187 0.84255 1.90708 1.16767 1.51662 1.86290 1.48731 1.08976 1.72138 1.05926 1.22253 0.79976 1.03279 0.96520 1.22761 0.97757 1.02385 0.93761 1.22205 0.95192 1.01029 0.92504 0.90092 1.21885 0.97053 0.96969 0.89604 1.60032 1.08531 1.62480 1.00413 1.21528 0.98830 0.97685 0.88754 1.20890 0.87683 0.85144 0.83756 1.90488 1.40555 1.39420 1.80451 1.41946 1.31527 1.41265 1.06367 1.19721 1.12754 1.25076 0.88813 0.90255 1.26035 0.99178 0.96793 0.99249 1.69677 1.34270 1.33245 1.18964 0.84865 0.77804 0.78148 0.77480 1.19747 1.19757 1.19557 1.22082 0.95053 1.01223 0.82547 0.89951 0.88696 0.86923 0.91885 0.90504 0.93340 0.91880 0.91617 0.87038 0.86560 0.89899 0.89111 0.89203 0.89762 0.90584 0.93466 0.83412 0.88026 0.91355 0.76981 0.91327 0.91057 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.54 13.21 67.79 0.90 -2.65 16 2 C -0.15 -2.59 7.79 25.65 0.20 -2.39 16 3 C -0.04 -0.59 1.80 -11.54 -0.02 -0.61 16 4 H 0.06 1.09 7.61 -2.39 -0.02 1.07 16 5 C -0.11 -1.02 5.38 30.59 0.16 -0.85 16 6 C -0.16 -1.18 9.55 71.98 0.69 -0.50 16 7 C -0.12 -1.47 4.25 29.85 0.13 -1.35 16 8 C 0.52 10.34 7.64 87.66 0.67 11.01 16 9 O -0.57 -16.14 14.40 -3.04 -0.04 -16.18 16 10 N -0.62 -10.91 3.34 -811.20 -2.71 -13.61 16 11 C 0.10 1.16 6.51 86.68 0.56 1.73 16 12 C -0.13 -1.80 5.90 31.78 0.19 -1.61 16 13 C -0.09 -1.65 3.25 -9.41 -0.03 -1.68 16 14 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 15 C 0.07 1.55 5.19 86.30 0.45 2.00 16 16 N -0.68 -20.02 6.13 -517.92 -3.17 -23.19 16 17 C 0.06 2.12 6.17 85.55 0.53 2.65 16 18 C 0.44 20.47 7.82 87.66 0.69 21.15 16 19 O -0.62 -33.94 15.78 -3.08 -0.05 -33.99 16 20 N -0.57 -29.16 5.29 -306.98 -1.62 -30.78 16 21 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 24 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 25 Si 0.99 42.63 29.55 68.60 2.03 44.65 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 29 C 0.11 2.19 6.37 86.84 0.55 2.74 16 30 H 0.08 1.78 7.83 -2.91 -0.02 1.75 16 31 H 0.09 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.11 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 37 H 0.06 0.38 6.71 -2.39 -0.02 0.36 16 38 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.12 0.89 6.42 -2.38 -0.02 0.87 16 40 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.08 1.07 7.92 -2.39 -0.02 1.05 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.05 0.86 7.97 -2.38 -0.02 0.84 16 46 H 0.35 10.38 7.94 -89.69 -0.71 9.67 16 47 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 48 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 50 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 51 H 0.07 1.30 8.04 -2.39 -0.02 1.28 16 52 H 0.06 1.38 8.04 -2.39 -0.02 1.37 16 Total: -1.00 -72.31 420.50 1.11 -71.19 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: -0.54 Total: 39.64 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 6.94 Total: 11.37 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -7.22 Total: -116.69 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -0.09 Total: -50.17 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -72.31 1.11 -71.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690731682.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.623 kcal (2) G-P(sol) polarization free energy of solvation -72.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds