Wall clock time and date at job start Tue Mar 31 2020 20:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 H 1.09007 * 109.46862 * 0.02562 * 3 2 1 5 5 C 1.52993 * 109.47475 * 240.00406 * 3 2 1 6 6 C 1.52997 * 109.47662 * 64.99579 * 5 3 2 7 7 C 1.53001 * 109.47047 * 120.00002 * 3 2 1 8 8 C 1.50699 * 109.47057 * 185.00672 * 7 3 2 9 9 O 1.21289 * 120.00145 * 359.97438 * 8 7 3 10 10 N 1.34773 * 120.00286 * 180.02562 * 8 7 3 11 11 C 1.47025 * 125.64396 * 359.68516 * 10 8 7 12 12 C 1.54335 * 107.26318 * 178.85173 * 11 10 8 13 13 C 1.55152 * 103.02486 * 338.14057 * 12 11 10 14 14 H 1.09004 * 111.00593 * 277.23723 * 13 12 11 15 15 C 1.52998 * 111.03928 * 153.39218 * 13 12 11 16 16 N 1.46898 * 109.46793 * 72.79080 * 15 13 12 17 17 C 1.46904 * 110.99771 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46800 * 179.97438 * 17 16 15 19 19 O 1.21294 * 120.00575 * 359.97438 * 18 17 16 20 20 N 1.34785 * 119.99741 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99907 * 179.97438 * 20 18 17 22 22 H 1.08007 * 119.99980 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99841 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99773 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00016 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46924 * 89.99891 * 25 23 21 27 27 H 1.48495 * 109.47153 * 209.99862 * 25 23 21 28 28 H 1.48497 * 109.47253 * 330.00250 * 25 23 21 29 29 C 1.47420 * 125.65109 * 179.97438 * 10 8 7 30 30 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 32 32 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 33 33 H 1.09005 * 109.47349 * 185.00043 * 5 3 2 34 34 H 1.09006 * 109.47045 * 304.99625 * 5 3 2 35 35 H 1.09006 * 109.46853 * 59.99928 * 6 5 3 36 36 H 1.08995 * 109.47515 * 179.97438 * 6 5 3 37 37 H 1.09005 * 109.47117 * 300.00605 * 6 5 3 38 38 H 1.09006 * 109.46863 * 304.99956 * 7 3 2 39 39 H 1.09000 * 109.47090 * 65.00587 * 7 3 2 40 40 H 1.09003 * 109.88351 * 298.39717 * 11 10 8 41 41 H 1.08999 * 109.88108 * 59.56199 * 11 10 8 42 42 H 1.09000 * 110.84936 * 219.67124 * 12 11 10 43 43 H 1.09000 * 110.51530 * 96.45659 * 12 11 10 44 44 H 1.09003 * 109.47392 * 192.78581 * 15 13 12 45 45 H 1.09002 * 109.47156 * 312.79017 * 15 13 12 46 46 H 1.00895 * 111.00045 * 303.94815 * 16 15 13 47 47 H 1.09001 * 109.47016 * 299.99625 * 17 16 15 48 48 H 1.08999 * 109.47485 * 59.99757 * 17 16 15 49 49 H 0.96995 * 119.99807 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99914 * 180.02562 * 24 23 21 51 51 H 1.09002 * 110.36435 * 322.92439 * 29 10 8 52 52 H 1.08994 * 110.37091 * 85.14075 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 3.6019 2.7400 1.3128 9 8 3.3892 3.5593 0.4442 10 7 4.4282 3.0401 2.3343 11 6 4.7683 2.1473 3.4519 12 6 5.7645 2.9040 4.3558 13 6 6.3610 3.9720 3.4014 14 1 7.1679 3.5522 2.8007 15 6 6.8418 5.1977 4.1806 16 7 8.0719 4.8625 4.9103 17 6 8.5635 6.0182 5.6723 18 6 9.8231 5.6367 6.4064 19 8 10.2674 4.5126 6.3052 20 7 10.4561 6.5448 7.1754 21 6 11.6018 6.1977 7.8437 22 1 11.9969 5.1965 7.7542 23 6 12.2546 7.1340 8.6361 24 7 13.3525 6.8011 9.2770 25 14 11.5717 8.8658 8.7902 26 1 10.6259 8.9249 9.9336 27 1 12.6869 9.8189 9.0205 28 1 10.8594 9.2302 7.5393 29 6 5.1360 4.3199 2.5194 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5400 -0.9354 -0.0045 32 1 1.8500 -0.9353 -0.0004 33 1 3.5540 2.2879 -1.2055 34 1 3.5906 0.5105 -1.2952 35 1 1.4089 2.3065 -2.4493 36 1 2.6830 1.4891 -3.3852 37 1 1.4455 0.5291 -2.5390 38 1 2.3278 1.2395 2.1370 39 1 3.7085 0.6113 1.2055 40 1 3.8687 1.8989 4.0150 41 1 5.2330 1.2377 3.0715 42 1 6.5435 2.2344 4.7203 43 1 5.2421 3.3780 5.1868 44 1 7.0421 6.0140 3.4865 45 1 6.0713 5.5035 4.8885 46 1 7.9289 4.0664 5.5135 47 1 8.7757 6.8404 4.9888 48 1 7.8049 6.3293 6.3905 49 1 10.1011 7.4438 7.2560 50 1 13.8080 7.4546 9.8305 51 1 5.4615 4.7159 1.5574 52 1 4.4933 5.0390 3.0270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690731683.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:27 Heat of formation + Delta-G solvation = -61.087689 kcal Electronic energy + Delta-G solvation = -28324.692183 eV Core-core repulsion = 24324.111104 eV Total energy + Delta-G solvation = -4000.581079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.56280 -38.75790 -38.26365 -36.83915 -35.48500 -33.94076 -32.30354 -32.14612 -31.66094 -30.57834 -29.74346 -27.50107 -25.53687 -24.35499 -23.22266 -23.00925 -22.09658 -20.58710 -20.04912 -19.39417 -19.36992 -18.36290 -17.38786 -16.95692 -16.01442 -15.77430 -15.65098 -15.28963 -15.23118 -14.88593 -14.58394 -14.42717 -14.10495 -14.03623 -13.66287 -13.43958 -13.26427 -13.19899 -13.04646 -12.82603 -12.70684 -12.42901 -12.31754 -12.23308 -12.05282 -11.69350 -11.55542 -11.50916 -11.28233 -11.18977 -11.08717 -10.96892 -10.93471 -10.88910 -10.61053 -10.00170 -9.98906 -9.72666 -9.59113 -8.94518 -8.62544 -8.22782 -8.17332 -6.32823 -3.84357 1.86210 2.34542 2.66621 3.01522 3.05188 3.13920 3.71860 3.91162 4.08412 4.12159 4.24586 4.34362 4.42496 4.58846 4.65293 4.75609 4.82633 4.86375 4.95458 4.98038 5.03654 5.08943 5.13362 5.16899 5.20008 5.29515 5.37152 5.40851 5.45588 5.49158 5.55401 5.58118 5.60408 5.62837 5.64557 5.78330 5.80253 5.83800 5.90439 5.95456 6.01702 6.06511 6.09704 6.24431 6.39415 7.03524 7.20264 7.52476 7.56563 7.87640 8.12584 8.57882 8.93120 9.40608 9.80593 10.80277 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036113 B = 0.001505 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.156514 B =18601.089665 C =18814.556322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C -0.046 4.046 4 H 0.081 0.919 5 C -0.122 4.122 6 C -0.148 4.148 7 C -0.129 4.129 8 C 0.528 3.472 9 O -0.537 6.537 10 N -0.620 5.620 11 C 0.101 3.899 12 C -0.133 4.133 13 C -0.098 4.098 14 H 0.098 0.902 15 C 0.070 3.930 16 N -0.667 5.667 17 C 0.048 3.952 18 C 0.449 3.551 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C 0.111 3.889 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.031 0.969 46 H 0.350 0.650 47 H 0.088 0.912 48 H 0.045 0.955 49 H 0.371 0.629 50 H 0.273 0.727 51 H 0.080 0.920 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.161 -9.501 -15.938 32.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.163 4.163 3 C -0.065 4.065 4 H 0.100 0.900 5 C -0.160 4.160 6 C -0.205 4.205 7 C -0.169 4.169 8 C 0.317 3.683 9 O -0.415 6.415 10 N -0.354 5.354 11 C -0.022 4.022 12 C -0.171 4.171 13 C -0.117 4.117 14 H 0.116 0.884 15 C -0.060 4.060 16 N -0.300 5.300 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.012 4.012 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.049 0.951 46 H 0.170 0.830 47 H 0.106 0.894 48 H 0.063 0.937 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.099 0.901 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.431 -9.675 -16.924 32.043 hybrid contribution -0.987 1.426 1.150 2.080 sum -26.418 -8.249 -15.774 31.855 Atomic orbital electron populations 1.23869 0.95942 1.01838 1.01199 1.22921 0.95921 0.97974 0.99528 1.20175 0.96874 0.95763 0.93682 0.90019 1.21661 0.98056 1.02881 0.93364 1.21726 0.99776 1.01554 0.97434 1.21683 1.00120 0.94775 1.00353 1.20370 0.78223 0.89643 0.80020 1.90690 1.62125 1.50769 1.37888 1.48551 1.46311 1.16430 1.24142 1.22082 0.98756 0.93728 0.87660 1.22777 0.98348 0.98378 0.97561 1.22385 0.96767 0.95977 0.96582 0.88383 1.21855 0.90707 0.96603 0.96804 1.60040 1.29843 1.07076 1.33039 1.21709 0.96058 0.94268 0.96464 1.19706 0.86837 0.86426 0.83520 1.90563 1.67822 1.20839 1.65480 1.42210 1.25203 1.11815 1.43743 1.19437 0.99740 1.01187 1.23101 0.86277 1.25037 0.95983 0.98374 0.96718 1.69620 1.17138 1.35386 1.29942 0.86669 0.79430 0.84584 0.78693 1.19672 1.20151 1.19464 1.22215 0.92573 0.85890 1.00478 0.88611 0.88495 0.87348 0.89820 0.92541 0.92838 0.92996 0.92954 0.88880 0.88733 0.91311 0.91098 0.89084 0.90540 0.90606 0.95118 0.83008 0.89408 0.93743 0.79681 0.91601 0.90148 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.09 14.32 29.02 0.42 -0.68 16 2 C -0.15 -0.87 7.75 -36.02 -0.28 -1.15 16 3 C -0.05 -0.34 1.80 -91.77 -0.17 -0.51 16 4 H 0.08 0.72 7.60 -51.92 -0.39 0.33 16 5 C -0.12 -1.00 5.18 -26.74 -0.14 -1.14 16 6 C -0.15 -1.11 9.73 37.16 0.36 -0.75 16 7 C -0.13 -0.88 4.35 -27.88 -0.12 -1.00 16 8 C 0.53 5.24 7.53 -10.99 -0.08 5.16 16 9 O -0.54 -7.14 14.24 5.55 0.08 -7.06 16 10 N -0.62 -5.53 3.33 -170.52 -0.57 -6.09 16 11 C 0.10 0.67 6.49 -3.06 -0.02 0.65 16 12 C -0.13 -0.99 5.89 -24.89 -0.15 -1.14 16 13 C -0.10 -0.88 3.25 -88.48 -0.29 -1.17 16 14 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 15 C 0.07 0.73 5.19 -3.83 -0.02 0.71 16 16 N -0.67 -9.54 6.13 -115.06 -0.70 -10.25 16 17 C 0.05 0.76 6.17 -4.97 -0.03 0.72 16 18 C 0.45 9.97 7.82 -10.98 -0.09 9.89 16 19 O -0.57 -14.88 15.78 5.55 0.09 -14.79 16 20 N -0.59 -13.85 5.09 -10.96 -0.06 -13.91 16 21 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 22 H 0.12 3.82 7.39 -52.48 -0.39 3.44 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.55 13.96 55.50 0.77 -24.78 16 25 Si 0.88 19.16 27.74 -169.99 -4.71 14.44 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 29 C 0.11 1.02 6.37 -2.54 -0.02 1.01 16 30 H 0.10 0.55 7.83 -52.49 -0.41 0.14 16 31 H 0.10 0.45 8.06 -52.48 -0.42 0.02 16 32 H 0.11 0.56 8.06 -52.49 -0.42 0.13 16 33 H 0.08 0.88 5.88 -51.93 -0.31 0.58 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.36 7.38 -51.93 -0.38 -0.03 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.55 7.92 -51.93 -0.41 0.13 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.29 7.97 -51.93 -0.41 -0.13 16 46 H 0.35 5.10 7.93 -39.29 -0.31 4.79 16 47 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 50 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 51 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16 52 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 LS Contribution 418.35 15.07 6.30 6.30 Total: -1.00 -33.74 418.35 -8.84 -42.58 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -9.18 Total: 10.64 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.86 Total: 2.92 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.55 Total: -55.03 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.17 Total: -21.85 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.74 -8.84 -42.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690731683.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.512 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds