Wall clock time and date at job start Tue Mar 31 2020 20:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 H 1.09007 * 109.46862 * 0.02562 * 3 2 1 5 5 C 1.52993 * 109.47475 * 240.00406 * 3 2 1 6 6 C 1.52997 * 109.47662 * 64.99579 * 5 3 2 7 7 C 1.53001 * 109.47047 * 120.00002 * 3 2 1 8 8 C 1.50699 * 109.47057 * 185.00672 * 7 3 2 9 9 O 1.21289 * 120.00145 * 359.97438 * 8 7 3 10 10 N 1.34773 * 120.00286 * 180.02562 * 8 7 3 11 11 C 1.47025 * 125.64396 * 359.68516 * 10 8 7 12 12 C 1.54335 * 107.26318 * 178.85173 * 11 10 8 13 13 C 1.55152 * 103.02486 * 338.14057 * 12 11 10 14 14 H 1.09004 * 111.00593 * 277.23723 * 13 12 11 15 15 C 1.52998 * 111.03928 * 153.39218 * 13 12 11 16 16 N 1.46898 * 109.46793 * 72.79080 * 15 13 12 17 17 C 1.46904 * 110.99771 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46800 * 179.97438 * 17 16 15 19 19 O 1.21294 * 120.00575 * 359.97438 * 18 17 16 20 20 N 1.34785 * 119.99741 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99907 * 179.97438 * 20 18 17 22 22 H 1.08007 * 119.99980 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99841 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99773 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00016 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46924 * 89.99891 * 25 23 21 27 27 H 1.48495 * 109.47153 * 209.99862 * 25 23 21 28 28 H 1.48497 * 109.47253 * 330.00250 * 25 23 21 29 29 C 1.47420 * 125.65109 * 179.97438 * 10 8 7 30 30 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 32 32 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 33 33 H 1.09005 * 109.47349 * 185.00043 * 5 3 2 34 34 H 1.09006 * 109.47045 * 304.99625 * 5 3 2 35 35 H 1.09006 * 109.46853 * 59.99928 * 6 5 3 36 36 H 1.08995 * 109.47515 * 179.97438 * 6 5 3 37 37 H 1.09005 * 109.47117 * 300.00605 * 6 5 3 38 38 H 1.09006 * 109.46863 * 304.99956 * 7 3 2 39 39 H 1.09000 * 109.47090 * 65.00587 * 7 3 2 40 40 H 1.09003 * 109.88351 * 298.39717 * 11 10 8 41 41 H 1.08999 * 109.88108 * 59.56199 * 11 10 8 42 42 H 1.09000 * 110.84936 * 219.67124 * 12 11 10 43 43 H 1.09000 * 110.51530 * 96.45659 * 12 11 10 44 44 H 1.09003 * 109.47392 * 192.78581 * 15 13 12 45 45 H 1.09002 * 109.47156 * 312.79017 * 15 13 12 46 46 H 1.00895 * 111.00045 * 303.94815 * 16 15 13 47 47 H 1.09001 * 109.47016 * 299.99625 * 17 16 15 48 48 H 1.08999 * 109.47485 * 59.99757 * 17 16 15 49 49 H 0.96995 * 119.99807 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99914 * 180.02562 * 24 23 21 51 51 H 1.09002 * 110.36435 * 322.92439 * 29 10 8 52 52 H 1.08994 * 110.37091 * 85.14075 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 3.6019 2.7400 1.3128 9 8 3.3892 3.5593 0.4442 10 7 4.4282 3.0401 2.3343 11 6 4.7683 2.1473 3.4519 12 6 5.7645 2.9040 4.3558 13 6 6.3610 3.9720 3.4014 14 1 7.1679 3.5522 2.8007 15 6 6.8418 5.1977 4.1806 16 7 8.0719 4.8625 4.9103 17 6 8.5635 6.0182 5.6723 18 6 9.8231 5.6367 6.4064 19 8 10.2674 4.5126 6.3052 20 7 10.4561 6.5448 7.1754 21 6 11.6018 6.1977 7.8437 22 1 11.9969 5.1965 7.7542 23 6 12.2546 7.1340 8.6361 24 7 13.3525 6.8011 9.2770 25 14 11.5717 8.8658 8.7902 26 1 10.6259 8.9249 9.9336 27 1 12.6869 9.8189 9.0205 28 1 10.8594 9.2302 7.5393 29 6 5.1360 4.3199 2.5194 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5400 -0.9354 -0.0045 32 1 1.8500 -0.9353 -0.0004 33 1 3.5540 2.2879 -1.2055 34 1 3.5906 0.5105 -1.2952 35 1 1.4089 2.3065 -2.4493 36 1 2.6830 1.4891 -3.3852 37 1 1.4455 0.5291 -2.5390 38 1 2.3278 1.2395 2.1370 39 1 3.7085 0.6113 1.2055 40 1 3.8687 1.8989 4.0150 41 1 5.2330 1.2377 3.0715 42 1 6.5435 2.2344 4.7203 43 1 5.2421 3.3780 5.1868 44 1 7.0421 6.0140 3.4865 45 1 6.0713 5.5035 4.8885 46 1 7.9289 4.0664 5.5135 47 1 8.7757 6.8404 4.9888 48 1 7.8049 6.3293 6.3905 49 1 10.1011 7.4438 7.2560 50 1 13.8080 7.4546 9.8305 51 1 5.4615 4.7159 1.5574 52 1 4.4933 5.0390 3.0270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690731683.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:26 Heat of formation + Delta-G solvation = -84.982516 kcal Electronic energy + Delta-G solvation = -28325.728340 eV Core-core repulsion = 24324.111104 eV Total energy + Delta-G solvation = -4001.617236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.27735 -40.29749 -39.21444 -37.50658 -36.60788 -35.84254 -33.75373 -33.12727 -32.66124 -31.20481 -30.45079 -28.75735 -26.72112 -25.51908 -24.13614 -23.85270 -22.67216 -21.43228 -21.16309 -20.55408 -20.22637 -20.04374 -18.06744 -18.02966 -17.34654 -16.91562 -16.64425 -16.45782 -16.04891 -15.83023 -15.61495 -15.35131 -15.03702 -15.00038 -14.74740 -14.62896 -14.36497 -14.28667 -13.89996 -13.81808 -13.62733 -13.42090 -13.35068 -13.27461 -12.98556 -12.80820 -12.69769 -12.40737 -12.14980 -12.09050 -12.01190 -11.95190 -11.68963 -11.65541 -11.58531 -11.54897 -11.49952 -10.73746 -10.42677 -10.23909 -10.19917 -9.64767 -9.30640 -8.40502 -6.01374 1.31538 1.36250 1.41594 1.45539 1.62159 1.97076 2.00665 2.23891 2.73298 3.16321 3.33140 3.49405 3.61651 3.78382 3.79494 3.98230 4.08185 4.15188 4.20026 4.30795 4.36754 4.39551 4.42380 4.42851 4.46015 4.53034 4.56541 4.60150 4.62807 4.73915 4.78214 4.82696 4.92567 4.95215 4.99100 5.03479 5.10195 5.16568 5.18607 5.27552 5.37933 5.42453 5.43674 5.53584 5.78231 5.91478 5.94916 6.05841 6.43264 6.52296 6.60822 6.89125 7.15485 7.41016 7.97547 8.77120 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036113 B = 0.001505 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.156514 B =18601.089665 C =18814.556322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.147 4.147 3 C -0.043 4.043 4 H 0.061 0.939 5 C -0.121 4.121 6 C -0.145 4.145 7 C -0.122 4.122 8 C 0.521 3.479 9 O -0.580 6.580 10 N -0.622 5.622 11 C 0.100 3.900 12 C -0.129 4.129 13 C -0.091 4.091 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.686 5.686 17 C 0.062 3.938 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.055 0.945 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.256 1.256 27 H -0.277 1.277 28 H -0.231 1.231 29 C 0.113 3.887 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.051 0.949 46 H 0.347 0.653 47 H 0.112 0.888 48 H 0.080 0.920 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.063 0.937 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.034 -8.554 -15.915 34.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.165 4.165 3 C -0.062 4.062 4 H 0.080 0.920 5 C -0.159 4.159 6 C -0.202 4.202 7 C -0.162 4.162 8 C 0.311 3.689 9 O -0.460 6.460 10 N -0.355 5.355 11 C -0.022 4.022 12 C -0.167 4.167 13 C -0.110 4.110 14 H 0.099 0.901 15 C -0.054 4.054 16 N -0.319 5.319 17 C -0.071 4.071 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.181 1.181 27 H -0.202 1.202 28 H -0.155 1.155 29 C -0.010 4.010 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.141 0.859 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.098 0.902 45 H 0.069 0.931 46 H 0.166 0.834 47 H 0.130 0.870 48 H 0.097 0.903 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.081 0.919 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -28.329 -8.740 -16.904 34.127 hybrid contribution -0.059 1.004 1.099 1.490 sum -28.387 -7.735 -15.805 33.399 Atomic orbital electron populations 1.23997 0.95984 1.02294 1.00526 1.22894 0.95960 0.97578 1.00093 1.20098 0.96529 0.95988 0.93602 0.92023 1.21615 0.98148 1.01913 0.94193 1.21704 0.99672 1.01557 0.97315 1.21707 1.00489 0.93196 1.00787 1.20960 0.78032 0.90385 0.79474 1.90673 1.63641 1.52239 1.39453 1.48664 1.45728 1.16662 1.24467 1.22234 0.99544 0.93452 0.86939 1.22767 0.98449 0.97916 0.97562 1.22225 0.96126 0.96077 0.96605 0.90126 1.21885 0.89554 0.97155 0.96825 1.60019 1.32265 1.06634 1.33008 1.21628 0.93112 0.95214 0.97114 1.21021 0.87956 0.85304 0.82118 1.90542 1.69516 1.23115 1.66673 1.42041 1.24188 1.13101 1.43984 1.19021 1.02172 0.99280 1.25419 0.92646 1.26106 0.95819 1.04100 0.95263 1.69804 1.19072 1.37731 1.30910 0.85366 0.79041 0.76456 0.80670 1.18059 1.20180 1.15475 1.22137 0.92766 0.86419 0.99672 0.89137 0.87121 0.85926 0.92555 0.91514 0.93817 0.92846 0.91945 0.86990 0.86921 0.89207 0.89943 0.89316 0.89631 0.90213 0.93131 0.83413 0.87046 0.90257 0.77464 0.91174 0.91852 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 14.32 67.79 0.97 -0.87 16 2 C -0.15 -1.49 7.75 25.65 0.20 -1.29 16 3 C -0.04 -0.60 1.80 -11.54 -0.02 -0.62 16 4 H 0.06 1.10 7.60 -2.38 -0.02 1.08 16 5 C -0.12 -1.95 5.18 30.59 0.16 -1.80 16 6 C -0.15 -2.16 9.73 71.98 0.70 -1.46 16 7 C -0.12 -1.46 4.35 29.85 0.13 -1.33 16 8 C 0.52 10.00 7.53 87.66 0.66 10.66 16 9 O -0.58 -15.81 14.24 -3.06 -0.04 -15.85 16 10 N -0.62 -10.23 3.33 -811.79 -2.70 -12.93 16 11 C 0.10 1.08 6.49 86.73 0.56 1.64 16 12 C -0.13 -1.65 5.89 31.78 0.19 -1.46 16 13 C -0.09 -1.50 3.25 -9.41 -0.03 -1.53 16 14 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 15 C 0.07 1.35 5.19 86.30 0.45 1.80 16 16 N -0.69 -18.30 6.13 -517.92 -3.17 -21.48 16 17 C 0.06 1.76 6.17 85.56 0.53 2.29 16 18 C 0.45 19.66 7.82 87.66 0.69 20.35 16 19 O -0.61 -33.31 15.78 -3.07 -0.05 -33.36 16 20 N -0.59 -27.36 5.09 -306.96 -1.56 -28.92 16 21 C -0.33 -19.15 10.16 84.04 0.85 -18.29 16 22 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 24 N -0.93 -56.01 13.96 21.66 0.30 -55.71 16 25 Si 0.96 38.26 27.74 68.60 1.90 40.16 16 26 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 27 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 28 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 29 C 0.11 1.97 6.37 86.85 0.55 2.52 16 30 H 0.09 0.96 7.83 -2.91 -0.02 0.93 16 31 H 0.11 0.76 8.06 -2.91 -0.02 0.74 16 32 H 0.12 0.91 8.06 -2.91 -0.02 0.89 16 33 H 0.06 1.24 5.88 -2.38 -0.01 1.22 16 34 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.79 7.38 -2.38 -0.02 0.77 16 38 H 0.11 0.92 8.14 -2.38 -0.02 0.91 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 0.96 7.92 -2.39 -0.02 0.94 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.05 0.75 7.97 -2.39 -0.02 0.73 16 46 H 0.35 9.65 7.93 -89.70 -0.71 8.94 16 47 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 48 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.39 14.82 5.76 -92.71 -0.53 14.29 16 50 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 51 H 0.06 1.31 8.04 -2.39 -0.02 1.29 16 52 H 0.07 1.19 8.04 -2.39 -0.02 1.18 16 Total: -1.00 -79.83 418.35 1.33 -78.50 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -0.40 Total: 39.30 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 7.05 Total: 10.29 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -7.13 Total: -119.05 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -0.09 Total: -49.21 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 1.90 Total: 40.16 kcal Total: -79.83 1.33 -78.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690731683.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.478 kcal (2) G-P(sol) polarization free energy of solvation -79.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds