Wall clock time and date at job start Tue Mar 31 2020 20:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50704 * 119.99842 * 2 1 4 4 H 1.08994 * 109.46916 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.46737 * 120.00745 * 3 2 1 6 6 C 1.53004 * 109.46828 * 294.99825 * 5 3 2 7 7 C 1.52998 * 109.46987 * 240.00380 * 3 2 1 8 8 C 1.50702 * 109.47207 * 65.00424 * 7 3 2 9 9 O 1.21281 * 119.99544 * 359.97438 * 8 7 3 10 10 N 1.34770 * 120.00033 * 179.97438 * 8 7 3 11 11 C 1.46502 * 120.00133 * 0.02562 * 10 8 7 12 12 C 1.46499 * 120.00143 * 179.97438 * 10 8 7 13 13 C 1.53000 * 109.47247 * 270.00157 * 12 10 8 14 14 H 1.08997 * 112.74433 * 284.22473 * 13 12 10 15 15 C 1.53512 * 113.47599 * 153.38189 * 13 12 10 16 16 C 1.53513 * 83.57401 * 219.21297 * 15 13 12 17 17 N 1.47473 * 113.47672 * 54.99920 * 13 12 10 18 18 C 1.46902 * 110.99939 * 253.47210 * 17 13 12 19 19 C 1.50706 * 109.46971 * 169.99979 * 18 17 13 20 20 O 1.21290 * 119.99841 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99701 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99872 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99710 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99814 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99693 * 180.02562 * 24 22 21 26 26 Si 1.86795 * 120.00141 * 359.73267 * 24 22 21 27 27 H 1.48502 * 109.46967 * 270.27331 * 26 24 22 28 28 H 1.48505 * 109.47170 * 30.26803 * 26 24 22 29 29 H 1.48498 * 109.47513 * 150.27417 * 26 24 22 30 30 H 1.08003 * 120.00039 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99888 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00039 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.47348 * 54.99494 * 5 3 2 34 34 H 1.08994 * 109.46868 * 175.00206 * 5 3 2 35 35 H 1.08999 * 109.47399 * 300.00018 * 6 5 3 36 36 H 1.09000 * 109.47449 * 60.00722 * 6 5 3 37 37 H 1.09005 * 109.46752 * 180.02562 * 6 5 3 38 38 H 1.09000 * 109.47112 * 304.99874 * 7 3 2 39 39 H 1.08998 * 109.46780 * 185.00200 * 7 3 2 40 40 H 1.09003 * 109.46990 * 269.99922 * 11 10 8 41 41 H 1.08995 * 109.47185 * 29.99620 * 11 10 8 42 42 H 1.09008 * 109.47489 * 149.99946 * 11 10 8 43 43 H 1.09002 * 109.47236 * 150.00208 * 12 10 8 44 44 H 1.09003 * 109.47238 * 30.00353 * 12 10 8 45 45 H 1.09010 * 114.16673 * 332.85079 * 15 13 12 46 46 H 1.08992 * 114.17713 * 105.37100 * 15 13 12 47 47 H 1.09011 * 113.46949 * 271.25512 * 16 15 13 48 48 H 1.08996 * 113.47834 * 140.79273 * 16 15 13 49 49 H 1.08991 * 109.47190 * 49.99937 * 18 17 13 50 50 H 1.09001 * 109.46767 * 289.99583 * 18 17 13 51 51 H 0.97004 * 120.00018 * 0.02562 * 21 19 18 52 52 H 0.96999 * 119.99859 * 179.72933 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9433 1.3861 1.2492 6 6 2.0566 1.4305 2.4953 7 6 2.9431 1.3862 -1.2493 8 6 2.0696 1.4302 -2.4766 9 8 0.8625 1.3993 -2.3631 10 7 2.6299 1.5040 -3.7001 11 6 4.0880 1.5408 -3.8371 12 6 1.7808 1.5462 -4.8932 13 6 1.5159 0.1206 -5.3813 14 1 2.3734 -0.3157 -5.8935 15 6 0.1993 -0.0254 -6.1572 16 6 0.1005 -1.3567 -5.3991 17 7 0.9409 -0.7577 -4.3456 18 6 1.9385 -1.7193 -3.8576 19 6 1.3998 -2.4289 -2.6421 20 8 0.2934 -2.1604 -2.2238 21 7 2.1469 -3.3626 -2.0206 22 6 1.6570 -4.0078 -0.9145 23 1 0.6723 -3.7681 -0.5416 24 6 2.4272 -4.9709 -0.2740 25 7 1.9574 -5.5897 0.7859 26 14 4.1269 -5.3918 -0.9244 27 1 4.0185 -6.4890 -1.9193 28 1 4.7201 -4.1939 -1.5714 29 1 4.9935 -5.8273 0.2001 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 3.5907 0.5103 1.2950 34 1 3.5541 2.2877 1.2056 35 1 1.4091 2.3062 2.4496 36 1 1.4457 0.5288 2.5390 37 1 2.6834 1.4886 3.3853 38 1 3.5905 0.5106 -1.2952 39 1 3.5539 2.2879 -1.2056 40 1 4.4286 2.5761 -3.8188 41 1 4.5444 0.9937 -3.0122 42 1 4.3760 1.0802 -4.7821 43 1 2.2844 2.1111 -5.6777 44 1 0.8343 2.0284 -4.6487 45 1 -0.5640 0.7025 -5.8819 46 1 0.3254 -0.1302 -7.2347 47 1 0.5798 -2.1877 -5.9168 48 1 -0.9102 -1.5930 -5.0664 49 1 2.8542 -1.1904 -3.5935 50 1 2.1527 -2.4486 -4.6390 51 1 3.0316 -3.5777 -2.3554 52 1 2.4934 -6.2647 1.2307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691056251.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:07 Heat of formation + Delta-G solvation = -3.660041 kcal Electronic energy + Delta-G solvation = -32357.917161 eV Core-core repulsion = 28359.826332 eV Total energy + Delta-G solvation = -3998.090829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.48562 -39.17633 -37.80234 -36.40163 -35.03590 -33.79839 -31.60009 -31.11511 -30.99403 -30.18948 -28.54313 -26.39893 -25.79087 -24.56907 -23.43680 -22.75164 -21.14941 -19.58353 -19.30894 -19.08615 -18.65863 -18.22808 -16.67261 -16.15354 -15.97719 -15.73030 -15.35661 -14.89376 -14.73736 -14.36303 -14.16118 -13.96597 -13.68039 -13.38407 -13.20845 -13.15607 -12.84233 -12.62021 -12.48200 -12.42284 -12.36510 -12.10295 -11.78401 -11.69797 -11.51932 -11.29980 -11.27458 -11.06739 -10.94763 -10.80231 -10.77914 -10.55680 -10.47143 -10.42710 -9.89138 -9.84337 -9.44076 -9.26468 -8.77701 -8.33709 -8.19427 -8.08958 -8.03435 -6.21645 -3.71409 3.04243 3.09284 3.10172 3.17478 3.21188 3.41761 3.91075 4.07509 4.16694 4.53704 4.75359 4.82258 4.92790 5.02516 5.09586 5.15033 5.16718 5.24060 5.29563 5.33904 5.43087 5.48069 5.50360 5.54186 5.57835 5.63208 5.67341 5.69575 5.78294 5.86947 5.95078 6.00611 6.01118 6.09263 6.10433 6.20108 6.25574 6.28501 6.32432 6.53873 6.58091 6.61153 6.77855 7.05643 7.29565 7.65418 7.69409 7.73931 7.91076 8.25848 8.69638 8.72678 9.07945 9.54203 10.00304 10.92133 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008359 B = 0.005754 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.735703 B = 4864.767308 C = 6686.365231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.154 4.154 3 C -0.039 4.039 4 H 0.072 0.928 5 C -0.115 4.115 6 C -0.149 4.149 7 C -0.130 4.130 8 C 0.512 3.488 9 O -0.485 6.485 10 N -0.627 5.627 11 C 0.080 3.920 12 C 0.140 3.860 13 C 0.001 3.999 14 H 0.069 0.931 15 C -0.135 4.135 16 C 0.001 3.999 17 N -0.406 5.406 18 C 0.008 3.992 19 C 0.462 3.538 20 O -0.532 6.532 21 N -0.603 5.603 22 C -0.293 4.293 23 H 0.118 0.882 24 C 0.039 3.961 25 N -0.886 5.886 26 Si 0.875 3.125 27 H -0.274 1.274 28 H -0.272 1.272 29 H -0.279 1.279 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.050 0.950 51 H 0.365 0.635 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.354 15.658 -11.096 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.172 4.172 3 C -0.058 4.058 4 H 0.090 0.910 5 C -0.152 4.152 6 C -0.206 4.206 7 C -0.170 4.170 8 C 0.299 3.701 9 O -0.356 6.356 10 N -0.363 5.363 11 C -0.064 4.064 12 C 0.016 3.984 13 C -0.110 4.110 14 H 0.087 0.913 15 C -0.173 4.173 16 C -0.128 4.128 17 N -0.128 5.128 18 C -0.125 4.125 19 C 0.246 3.754 20 O -0.411 6.411 21 N -0.245 5.245 22 C -0.421 4.421 23 H 0.136 0.864 24 C -0.163 4.163 25 N -0.528 5.528 26 Si 0.702 3.298 27 H -0.200 1.200 28 H -0.198 1.198 29 H -0.204 1.204 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.105 0.895 49 H 0.096 0.904 50 H 0.068 0.932 51 H 0.197 0.803 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.642 15.944 -9.896 19.595 hybrid contribution 2.323 -1.200 -1.270 2.907 sum 7.965 14.744 -11.166 20.137 Atomic orbital electron populations 1.23486 0.95884 1.00305 0.97596 1.22430 0.96092 0.96046 1.02598 1.20112 0.96119 0.97802 0.91743 0.90978 1.21527 0.97937 1.01227 0.94559 1.21735 0.99770 1.02298 0.96842 1.21720 0.98795 1.02904 0.93618 1.20505 0.89338 0.76449 0.83788 1.90763 1.14214 1.45154 1.85441 1.47773 1.06037 1.76201 1.06296 1.21716 0.80864 1.01202 1.02584 1.21310 0.96035 0.94731 0.86309 1.23894 0.96805 0.96584 0.93707 0.91279 1.23130 0.97207 0.98702 0.98268 1.23758 1.01110 0.95540 0.92370 1.68943 1.11941 1.11211 1.20700 1.22534 0.96335 0.95627 0.97968 1.19499 0.87192 0.82688 0.85988 1.90595 1.19799 1.64605 1.66065 1.42233 1.16537 1.37152 1.28571 1.19359 1.03927 1.16327 1.02526 0.86405 1.24975 0.98004 0.97009 0.96269 1.69619 1.37665 1.25952 1.19523 0.86748 0.84906 0.78895 0.79214 1.19958 1.19792 1.20393 0.90461 0.88684 0.87644 0.91844 0.92711 0.93229 0.91830 0.93333 0.89541 0.90061 0.93078 0.91247 0.91726 0.91142 0.89422 0.88772 0.91079 0.92105 0.89450 0.90402 0.93208 0.80300 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 12.70 29.01 0.37 -2.48 16 2 C -0.15 -3.01 6.76 -36.03 -0.24 -3.25 16 3 C -0.04 -0.60 1.82 -91.77 -0.17 -0.77 16 4 H 0.07 1.16 7.60 -51.93 -0.39 0.77 16 5 C -0.11 -1.53 5.39 -26.73 -0.14 -1.67 16 6 C -0.15 -1.99 9.73 37.16 0.36 -1.62 16 7 C -0.13 -1.77 3.72 -27.88 -0.10 -1.87 16 8 C 0.51 7.90 6.91 -10.99 -0.08 7.82 16 9 O -0.48 -9.40 13.18 5.56 0.07 -9.33 16 10 N -0.63 -7.60 2.63 -181.57 -0.48 -8.07 16 11 C 0.08 0.68 10.24 59.85 0.61 1.29 16 12 C 0.14 1.59 5.58 -4.04 -0.02 1.57 16 13 C 0.00 0.02 3.35 -71.44 -0.24 -0.22 16 14 H 0.07 0.75 7.91 -51.93 -0.41 0.33 16 15 C -0.13 -1.51 8.00 -26.20 -0.21 -1.72 16 16 C 0.00 0.02 7.71 -7.55 -0.06 -0.04 16 17 N -0.41 -6.72 4.42 -237.96 -1.05 -7.78 16 18 C 0.01 0.14 5.30 -4.97 -0.03 0.11 16 19 C 0.46 10.54 7.85 -10.98 -0.09 10.46 16 20 O -0.53 -14.15 15.31 5.55 0.08 -14.07 16 21 N -0.60 -14.35 5.09 -10.96 -0.06 -14.41 16 22 C -0.29 -8.20 10.16 -14.93 -0.15 -8.35 16 23 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 24 C 0.04 1.08 5.50 -17.47 -0.10 0.98 16 25 N -0.89 -26.09 13.96 55.50 0.77 -25.32 16 26 Si 0.88 19.62 27.74 -169.99 -4.71 14.90 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.08 1.53 7.83 -52.48 -0.41 1.12 16 31 H 0.09 2.27 7.88 -52.48 -0.41 1.85 16 32 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.97 7.38 -51.93 -0.38 0.59 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.18 7.40 -51.93 -0.38 0.80 16 39 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.58 6.44 -51.93 -0.33 0.25 16 42 H 0.06 0.45 8.07 -51.92 -0.42 0.04 16 43 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 44 H 0.09 1.18 7.15 -51.93 -0.37 0.81 16 45 H 0.09 1.10 7.94 -51.92 -0.41 0.69 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.82 7.42 -51.92 -0.39 0.43 16 48 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 49 H 0.08 1.26 7.89 -51.93 -0.41 0.85 16 50 H 0.05 0.79 7.30 -51.93 -0.38 0.41 16 51 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 52 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 414.67 15.07 6.25 6.25 Total: -1.00 -34.07 414.67 -8.52 -42.60 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -9.12 Total: 15.00 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.28 Total: 0.23 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.81 Total: -55.58 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.16 Total: -23.40 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.07 -8.52 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691056251.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.935 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds