Wall clock time and date at job start Tue Mar 31 2020 20:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50704 * 119.99842 * 2 1 4 4 H 1.08994 * 109.46916 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.46737 * 120.00745 * 3 2 1 6 6 C 1.53004 * 109.46828 * 294.99825 * 5 3 2 7 7 C 1.52998 * 109.46987 * 240.00380 * 3 2 1 8 8 C 1.50702 * 109.47207 * 65.00424 * 7 3 2 9 9 O 1.21281 * 119.99544 * 359.97438 * 8 7 3 10 10 N 1.34770 * 120.00033 * 179.97438 * 8 7 3 11 11 C 1.46502 * 120.00133 * 0.02562 * 10 8 7 12 12 C 1.46499 * 120.00143 * 179.97438 * 10 8 7 13 13 C 1.53000 * 109.47247 * 270.00157 * 12 10 8 14 14 H 1.08997 * 112.74433 * 284.22473 * 13 12 10 15 15 C 1.53512 * 113.47599 * 153.38189 * 13 12 10 16 16 C 1.53513 * 83.57401 * 219.21297 * 15 13 12 17 17 N 1.47473 * 113.47672 * 54.99920 * 13 12 10 18 18 C 1.46902 * 110.99939 * 253.47210 * 17 13 12 19 19 C 1.50706 * 109.46971 * 169.99979 * 18 17 13 20 20 O 1.21290 * 119.99841 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99701 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99872 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99710 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99814 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99693 * 180.02562 * 24 22 21 26 26 Si 1.86795 * 120.00141 * 359.73267 * 24 22 21 27 27 H 1.48502 * 109.46967 * 270.27331 * 26 24 22 28 28 H 1.48505 * 109.47170 * 30.26803 * 26 24 22 29 29 H 1.48498 * 109.47513 * 150.27417 * 26 24 22 30 30 H 1.08003 * 120.00039 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99888 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00039 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.47348 * 54.99494 * 5 3 2 34 34 H 1.08994 * 109.46868 * 175.00206 * 5 3 2 35 35 H 1.08999 * 109.47399 * 300.00018 * 6 5 3 36 36 H 1.09000 * 109.47449 * 60.00722 * 6 5 3 37 37 H 1.09005 * 109.46752 * 180.02562 * 6 5 3 38 38 H 1.09000 * 109.47112 * 304.99874 * 7 3 2 39 39 H 1.08998 * 109.46780 * 185.00200 * 7 3 2 40 40 H 1.09003 * 109.46990 * 269.99922 * 11 10 8 41 41 H 1.08995 * 109.47185 * 29.99620 * 11 10 8 42 42 H 1.09008 * 109.47489 * 149.99946 * 11 10 8 43 43 H 1.09002 * 109.47236 * 150.00208 * 12 10 8 44 44 H 1.09003 * 109.47238 * 30.00353 * 12 10 8 45 45 H 1.09010 * 114.16673 * 332.85079 * 15 13 12 46 46 H 1.08992 * 114.17713 * 105.37100 * 15 13 12 47 47 H 1.09011 * 113.46949 * 271.25512 * 16 15 13 48 48 H 1.08996 * 113.47834 * 140.79273 * 16 15 13 49 49 H 1.08991 * 109.47190 * 49.99937 * 18 17 13 50 50 H 1.09001 * 109.46767 * 289.99583 * 18 17 13 51 51 H 0.97004 * 120.00018 * 0.02562 * 21 19 18 52 52 H 0.96999 * 119.99859 * 179.72933 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9433 1.3861 1.2492 6 6 2.0566 1.4305 2.4953 7 6 2.9431 1.3862 -1.2493 8 6 2.0696 1.4302 -2.4766 9 8 0.8625 1.3993 -2.3631 10 7 2.6299 1.5040 -3.7001 11 6 4.0880 1.5408 -3.8371 12 6 1.7808 1.5462 -4.8932 13 6 1.5159 0.1206 -5.3813 14 1 2.3734 -0.3157 -5.8935 15 6 0.1993 -0.0254 -6.1572 16 6 0.1005 -1.3567 -5.3991 17 7 0.9409 -0.7577 -4.3456 18 6 1.9385 -1.7193 -3.8576 19 6 1.3998 -2.4289 -2.6421 20 8 0.2934 -2.1604 -2.2238 21 7 2.1469 -3.3626 -2.0206 22 6 1.6570 -4.0078 -0.9145 23 1 0.6723 -3.7681 -0.5416 24 6 2.4272 -4.9709 -0.2740 25 7 1.9574 -5.5897 0.7859 26 14 4.1269 -5.3918 -0.9244 27 1 4.0185 -6.4890 -1.9193 28 1 4.7201 -4.1939 -1.5714 29 1 4.9935 -5.8273 0.2001 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 3.5907 0.5103 1.2950 34 1 3.5541 2.2877 1.2056 35 1 1.4091 2.3062 2.4496 36 1 1.4457 0.5288 2.5390 37 1 2.6834 1.4886 3.3853 38 1 3.5905 0.5106 -1.2952 39 1 3.5539 2.2879 -1.2056 40 1 4.4286 2.5761 -3.8188 41 1 4.5444 0.9937 -3.0122 42 1 4.3760 1.0802 -4.7821 43 1 2.2844 2.1111 -5.6777 44 1 0.8343 2.0284 -4.6487 45 1 -0.5640 0.7025 -5.8819 46 1 0.3254 -0.1302 -7.2347 47 1 0.5798 -2.1877 -5.9168 48 1 -0.9102 -1.5930 -5.0664 49 1 2.8542 -1.1904 -3.5935 50 1 2.1527 -2.4486 -4.6390 51 1 3.0316 -3.5777 -2.3554 52 1 2.4934 -6.2647 1.2307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691056251.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:06 Heat of formation + Delta-G solvation = -28.299094 kcal Electronic energy + Delta-G solvation = -32358.985590 eV Core-core repulsion = 28359.826332 eV Total energy + Delta-G solvation = -3999.159259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.60581 -40.38463 -39.58996 -37.63781 -36.11146 -35.84271 -33.67244 -32.52923 -32.27390 -31.42640 -29.53201 -27.55025 -27.19764 -25.69949 -25.10540 -23.76962 -22.48122 -21.18754 -20.67973 -20.45013 -20.23220 -19.75460 -17.73330 -17.61229 -17.11717 -17.00449 -16.71895 -16.51577 -16.20412 -15.66819 -15.59817 -15.16504 -15.11626 -14.77377 -14.66642 -14.36760 -14.16864 -14.02372 -13.96088 -13.74904 -13.54639 -13.14675 -13.00315 -12.92055 -12.79981 -12.66298 -12.48906 -12.38924 -12.23072 -12.06529 -12.01855 -12.00675 -11.88799 -11.65700 -11.49726 -11.42197 -11.31526 -10.48785 -10.30691 -10.15375 -9.82321 -9.63151 -9.20432 -8.35442 -5.93636 1.26210 1.33397 1.41380 1.71265 2.05018 2.09795 2.24019 2.27517 2.77604 3.20308 3.34600 3.59549 3.78368 3.87011 3.90071 3.96593 4.13994 4.25815 4.28604 4.31969 4.38764 4.41956 4.42636 4.45531 4.46890 4.50724 4.61221 4.63045 4.69704 4.81855 4.82076 4.86711 4.99311 5.00391 5.04489 5.07415 5.09145 5.12766 5.18302 5.28778 5.41689 5.46313 5.50260 5.59952 5.88651 6.00129 6.01549 6.21385 6.24207 6.67292 6.69094 6.98881 7.49168 7.63235 8.11554 8.83038 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008359 B = 0.005754 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.735703 B = 4864.767308 C = 6686.365231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.034 4.034 4 H 0.068 0.932 5 C -0.109 4.109 6 C -0.151 4.151 7 C -0.126 4.126 8 C 0.501 3.499 9 O -0.539 6.539 10 N -0.622 5.622 11 C 0.072 3.928 12 C 0.138 3.862 13 C 0.010 3.990 14 H 0.100 0.900 15 C -0.114 4.114 16 C -0.009 4.009 17 N -0.448 5.448 18 C 0.023 3.977 19 C 0.459 3.541 20 O -0.579 6.579 21 N -0.602 5.602 22 C -0.306 4.306 23 H 0.049 0.951 24 C -0.019 4.019 25 N -0.941 5.941 26 Si 0.960 3.040 27 H -0.262 1.262 28 H -0.232 1.232 29 H -0.276 1.276 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.029 0.971 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.049 0.951 49 H 0.098 0.902 50 H 0.077 0.923 51 H 0.383 0.617 52 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.603 17.912 -14.472 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.143 4.143 3 C -0.053 4.053 4 H 0.086 0.914 5 C -0.147 4.147 6 C -0.208 4.208 7 C -0.166 4.166 8 C 0.289 3.711 9 O -0.414 6.414 10 N -0.356 5.356 11 C -0.070 4.070 12 C 0.015 3.985 13 C -0.100 4.100 14 H 0.117 0.883 15 C -0.152 4.152 16 C -0.139 4.139 17 N -0.171 5.171 18 C -0.109 4.109 19 C 0.245 3.755 20 O -0.459 6.459 21 N -0.246 5.246 22 C -0.436 4.436 23 H 0.067 0.933 24 C -0.216 4.216 25 N -0.583 5.583 26 Si 0.781 3.219 27 H -0.186 1.186 28 H -0.155 1.155 29 H -0.202 1.202 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.142 0.858 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.132 0.868 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.126 0.874 47 H 0.096 0.904 48 H 0.068 0.932 49 H 0.116 0.884 50 H 0.095 0.905 51 H 0.217 0.783 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.931 18.225 -13.326 25.085 hybrid contribution 0.544 -1.874 -0.204 1.962 sum 11.475 16.351 -13.530 24.127 Atomic orbital electron populations 1.23150 0.96541 0.98499 1.01024 1.22402 0.95344 0.96910 0.99632 1.20091 0.96441 0.94263 0.94463 0.91408 1.21520 0.97526 1.02770 0.92837 1.21753 0.99960 1.01044 0.98090 1.21725 0.98287 1.04999 0.91583 1.20885 0.88879 0.75947 0.85356 1.90763 1.16445 1.47851 1.86366 1.47822 1.07905 1.74570 1.05332 1.22019 0.78004 1.03086 1.03928 1.21412 0.95487 0.94578 0.87036 1.24003 0.97877 0.96002 0.92118 0.88256 1.23017 0.96482 0.95735 0.99965 1.23846 0.99199 0.98029 0.92792 1.68927 1.12959 1.12015 1.23158 1.22390 0.96784 0.96187 0.95510 1.20713 0.86370 0.81557 0.86813 1.90595 1.22162 1.65602 1.67562 1.42045 1.17433 1.37468 1.27666 1.18834 1.02022 1.18004 1.04725 0.93309 1.26013 1.03633 0.95942 0.96010 1.69823 1.40234 1.26815 1.21427 0.85434 0.77407 0.80198 0.78881 1.18636 1.15503 1.20158 0.89290 0.93417 0.91615 0.92509 0.88811 0.92328 0.95185 0.91390 0.89309 0.85805 0.90779 0.91073 0.89433 0.86843 0.92329 0.90007 0.87353 0.90439 0.93226 0.88398 0.90476 0.78260 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.29 12.70 67.78 0.86 -6.43 16 2 C -0.12 -5.27 6.76 25.64 0.17 -5.09 16 3 C -0.03 -1.03 1.82 -11.54 -0.02 -1.05 16 4 H 0.07 2.17 7.60 -2.39 -0.02 2.15 16 5 C -0.11 -2.71 5.39 30.60 0.16 -2.54 16 6 C -0.15 -3.98 9.73 71.98 0.70 -3.28 16 7 C -0.13 -3.11 3.72 29.85 0.11 -3.00 16 8 C 0.50 14.69 6.91 87.66 0.61 15.29 16 9 O -0.54 -21.37 13.18 -3.03 -0.04 -21.41 16 10 N -0.62 -12.82 2.63 -846.75 -2.22 -15.04 16 11 C 0.07 0.80 10.24 127.77 1.31 2.11 16 12 C 0.14 2.66 5.58 86.38 0.48 3.14 16 13 C 0.01 0.21 3.35 42.19 0.14 0.35 16 14 H 0.10 1.51 7.91 -2.39 -0.02 1.50 16 15 C -0.11 -2.27 8.00 30.94 0.25 -2.02 16 16 C -0.01 -0.27 7.71 83.57 0.64 0.37 16 17 N -0.45 -14.45 4.42 -906.78 -4.01 -18.46 16 18 C 0.02 0.78 5.30 85.56 0.45 1.23 16 19 C 0.46 21.66 7.85 87.66 0.69 22.35 16 20 O -0.58 -33.42 15.31 -3.06 -0.05 -33.47 16 21 N -0.60 -29.28 5.09 -306.98 -1.56 -30.84 16 22 C -0.31 -18.35 10.16 84.04 0.85 -17.49 16 23 H 0.05 3.53 7.39 -2.91 -0.02 3.51 16 24 C -0.02 -1.06 5.50 84.93 0.47 -0.59 16 25 N -0.94 -58.43 13.96 21.66 0.30 -58.12 16 26 Si 0.96 39.91 27.74 68.60 1.90 41.81 16 27 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 28 H -0.23 -8.05 6.52 99.48 0.65 -7.40 16 29 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 30 H 0.09 3.90 7.83 -2.91 -0.02 3.88 16 31 H 0.05 2.64 7.88 -2.91 -0.02 2.62 16 32 H 0.07 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.03 0.96 7.38 -2.39 -0.02 0.95 16 37 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.09 2.18 7.40 -2.39 -0.02 2.16 16 39 H 0.12 2.02 8.11 -2.39 -0.02 2.00 16 40 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.07 0.81 6.44 -2.39 -0.02 0.80 16 42 H 0.09 0.64 8.07 -2.38 -0.02 0.62 16 43 H 0.11 1.24 8.07 -2.39 -0.02 1.22 16 44 H 0.06 1.50 7.15 -2.39 -0.02 1.48 16 45 H 0.08 1.84 7.94 -2.38 -0.02 1.82 16 46 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 47 H 0.08 1.92 7.42 -2.38 -0.02 1.90 16 48 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.10 2.84 7.89 -2.39 -0.02 2.82 16 50 H 0.08 2.15 7.30 -2.39 -0.02 2.14 16 51 H 0.38 15.66 5.76 -92.71 -0.53 15.12 16 52 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -87.94 414.67 2.50 -85.44 By element: Atomic # 1 Polarization: 46.46 SS G_CDS: 0.30 Total: 46.76 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 7.88 Total: 3.34 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -7.49 Total: -122.47 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -0.09 Total: -54.88 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 1.90 Total: 41.81 kcal Total: -87.94 2.50 -85.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691056251.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.142 kcal (2) G-P(sol) polarization free energy of solvation -87.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds