Wall clock time and date at job start Tue Mar 31 2020 20:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99774 * 2 1 4 4 H 1.08994 * 109.47205 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47295 * 240.00041 * 3 2 1 6 6 C 1.53006 * 109.46623 * 65.00435 * 5 3 2 7 7 C 1.53003 * 109.46522 * 120.00433 * 3 2 1 8 8 C 1.50706 * 109.46765 * 184.99983 * 7 3 2 9 9 O 1.21281 * 119.99986 * 359.97438 * 8 7 3 10 10 N 1.34777 * 119.99592 * 180.02562 * 8 7 3 11 11 C 1.46496 * 120.00319 * 359.97438 * 10 8 7 12 12 C 1.46502 * 119.99510 * 180.02562 * 10 8 7 13 13 C 1.53000 * 109.47029 * 90.00083 * 12 10 8 14 14 H 1.08997 * 112.74897 * 75.77118 * 13 12 10 15 15 C 1.53522 * 113.47200 * 206.61458 * 13 12 10 16 16 C 1.53514 * 83.57020 * 140.79170 * 15 13 12 17 17 N 1.47481 * 87.93712 * 333.97517 * 16 15 13 18 18 C 1.46892 * 111.00389 * 138.70286 * 17 16 15 19 19 C 1.50700 * 109.47293 * 74.02982 * 18 17 16 20 20 O 1.21293 * 119.99450 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00593 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00407 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99917 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00226 * 180.02562 * 22 21 19 25 25 N 1.31416 * 119.99690 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00149 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47163 * 89.99931 * 26 24 22 28 28 H 1.48506 * 109.46969 * 210.00027 * 26 24 22 29 29 H 1.48499 * 109.47140 * 329.99689 * 26 24 22 30 30 H 1.07997 * 119.99968 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00063 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.00063 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47486 * 305.00606 * 5 3 2 34 34 H 1.09001 * 109.47362 * 184.99884 * 5 3 2 35 35 H 1.09001 * 109.47002 * 179.97438 * 6 5 3 36 36 H 1.08993 * 109.46955 * 300.00075 * 6 5 3 37 37 H 1.09000 * 109.47050 * 59.99904 * 6 5 3 38 38 H 1.08997 * 109.47571 * 304.99604 * 7 3 2 39 39 H 1.09000 * 109.47046 * 65.00710 * 7 3 2 40 40 H 1.08998 * 109.47518 * 90.00028 * 11 10 8 41 41 H 1.09002 * 109.46840 * 210.00336 * 11 10 8 42 42 H 1.08997 * 109.47131 * 330.00103 * 11 10 8 43 43 H 1.09003 * 109.46809 * 210.00109 * 12 10 8 44 44 H 1.08996 * 109.47456 * 329.99810 * 12 10 8 45 45 H 1.08991 * 114.17089 * 254.43479 * 15 13 12 46 46 H 1.08998 * 114.17079 * 27.14474 * 15 13 12 47 47 H 1.09005 * 113.47480 * 219.20785 * 16 15 13 48 48 H 1.08995 * 113.53253 * 88.75233 * 16 15 13 49 49 H 1.08993 * 109.47843 * 194.03685 * 18 17 16 50 50 H 1.09002 * 109.47188 * 314.03561 * 18 17 16 51 51 H 0.97004 * 119.99807 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99703 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3863 -1.2492 6 6 2.0563 1.4309 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 3.6020 2.7400 1.3128 9 8 3.3893 3.5592 0.4442 10 7 4.4284 3.0399 2.3344 11 6 4.6857 2.0501 3.3833 12 6 5.0684 4.3563 2.3964 13 6 4.1726 5.3228 3.1737 14 1 4.2042 5.1537 4.2501 15 6 4.3710 6.7928 2.7781 16 6 2.8453 6.8612 2.9341 17 7 2.8034 5.4178 2.6339 18 6 1.8446 4.7264 3.5059 19 6 0.4404 5.0481 3.0634 20 8 0.2566 5.7810 2.1146 21 7 -0.6110 4.5216 3.7219 22 6 -1.8884 4.8139 3.3190 23 1 -2.0522 5.4664 2.4741 24 6 -2.9725 4.2714 3.9982 25 7 -2.7732 3.4778 5.0265 26 14 -4.7130 4.6703 3.4496 27 1 -5.1576 3.6692 2.4469 28 1 -5.6225 4.6333 4.6230 29 1 -4.7425 6.0254 2.8431 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5906 0.5106 -1.2953 34 1 3.5540 2.2880 -1.2056 35 1 2.6829 1.4892 -3.3853 36 1 1.4454 0.5293 -2.5389 37 1 1.4088 2.3066 -2.4492 38 1 2.3280 1.2394 2.1370 39 1 3.7086 0.6113 1.2054 40 1 5.5463 1.4416 3.1055 41 1 4.8909 2.5621 4.3234 42 1 3.8113 1.4102 3.5014 43 1 6.0313 4.2687 2.8998 44 1 5.2200 4.7346 1.3856 45 1 4.9214 7.3820 3.5115 46 1 4.7221 6.9365 1.7563 47 1 2.3586 7.4764 2.1773 48 1 2.5218 7.1038 3.9463 49 1 2.0075 3.6505 3.4441 50 1 1.9858 5.0566 4.5351 51 1 -0.4640 3.9358 4.4809 52 1 -3.5300 3.0988 5.5005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691056254.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:15 Heat of formation + Delta-G solvation = -40.188261 kcal Electronic energy + Delta-G solvation = -31413.295530 eV Core-core repulsion = 27413.620718 eV Total energy + Delta-G solvation = -3999.674812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68371 -40.55664 -39.54388 -37.71376 -36.22010 -35.95870 -33.36613 -32.68064 -32.26531 -31.46745 -29.56634 -27.56667 -27.26766 -25.70863 -25.35668 -23.81187 -22.66912 -21.15425 -20.63689 -20.54261 -19.96502 -19.85228 -17.84242 -17.80106 -17.12927 -16.99284 -16.86771 -16.47010 -16.04381 -15.75964 -15.69403 -15.57762 -15.28888 -15.01235 -14.69123 -14.17874 -14.15062 -13.99379 -13.72982 -13.57553 -13.54712 -13.38302 -13.11383 -13.00223 -12.87324 -12.80191 -12.53548 -12.47529 -12.31840 -12.16848 -12.10149 -11.99421 -11.89815 -11.63439 -11.57930 -11.49066 -11.46613 -10.44563 -10.38974 -10.20847 -10.04476 -9.72959 -9.28029 -8.50015 -5.98463 1.33260 1.36582 1.38581 1.49364 1.92359 2.01220 2.22168 2.26764 2.89925 3.15700 3.32277 3.58923 3.69058 3.79087 3.86898 4.10303 4.12564 4.18613 4.24605 4.27407 4.36067 4.36337 4.39284 4.41634 4.46707 4.49903 4.53277 4.61561 4.63159 4.77464 4.83837 4.86959 4.93721 4.97711 4.99854 5.03838 5.04731 5.12130 5.17621 5.26514 5.36335 5.40619 5.46051 5.48489 5.69732 5.82416 5.91718 5.96539 6.17848 6.57329 6.61470 7.09855 7.51385 7.51665 8.09362 8.67558 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008019 B = 0.004659 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.938071 B = 6008.374773 C = 8215.820726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.047 4.047 4 H 0.030 0.970 5 C -0.110 4.110 6 C -0.146 4.146 7 C -0.125 4.125 8 C 0.505 3.495 9 O -0.552 6.552 10 N -0.618 5.618 11 C 0.071 3.929 12 C 0.138 3.862 13 C 0.009 3.991 14 H 0.096 0.904 15 C -0.113 4.113 16 C -0.002 4.002 17 N -0.449 5.449 18 C 0.035 3.965 19 C 0.440 3.560 20 O -0.619 6.619 21 N -0.573 5.573 22 C -0.333 4.333 23 H 0.071 0.929 24 C -0.008 4.008 25 N -0.917 5.917 26 Si 0.988 3.012 27 H -0.271 1.271 28 H -0.265 1.265 29 H -0.276 1.276 30 H 0.117 0.883 31 H 0.064 0.936 32 H 0.141 0.859 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.049 0.951 48 H 0.064 0.936 49 H 0.090 0.910 50 H 0.071 0.929 51 H 0.395 0.605 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.039 -8.779 -0.107 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.153 4.153 3 C -0.066 4.066 4 H 0.048 0.952 5 C -0.147 4.147 6 C -0.203 4.203 7 C -0.165 4.165 8 C 0.293 3.707 9 O -0.429 6.429 10 N -0.352 5.352 11 C -0.071 4.071 12 C 0.015 3.985 13 C -0.101 4.101 14 H 0.114 0.886 15 C -0.151 4.151 16 C -0.132 4.132 17 N -0.172 5.172 18 C -0.097 4.097 19 C 0.228 3.772 20 O -0.504 6.504 21 N -0.210 5.210 22 C -0.462 4.462 23 H 0.089 0.911 24 C -0.208 4.208 25 N -0.558 5.558 26 Si 0.812 3.188 27 H -0.197 1.197 28 H -0.189 1.189 29 H -0.201 1.201 30 H 0.135 0.865 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.107 0.893 39 H 0.143 0.857 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.135 0.865 44 H 0.082 0.918 45 H 0.127 0.873 46 H 0.106 0.894 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.108 0.892 50 H 0.088 0.912 51 H 0.228 0.772 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.488 -8.231 -1.727 21.226 hybrid contribution -1.580 0.456 1.007 1.929 sum 17.908 -7.775 -0.720 19.536 Atomic orbital electron populations 1.23942 0.96736 1.01474 1.01851 1.22988 0.95394 0.98042 0.98912 1.20072 0.96552 0.94978 0.94977 0.95185 1.21533 0.97744 1.02406 0.93038 1.21714 0.99736 1.00864 0.98025 1.21697 1.00234 0.95256 0.99312 1.20919 0.78747 0.89549 0.81446 1.90713 1.61281 1.51041 1.39856 1.47836 1.46997 1.15469 1.24879 1.22046 1.02529 0.92019 0.90525 1.21453 0.95017 0.81336 1.00744 1.24037 0.90398 0.96563 0.99149 0.88606 1.23071 0.93814 0.94942 1.03232 1.23620 0.98215 0.91673 0.99651 1.68970 1.01405 1.04537 1.42315 1.22225 0.90533 1.00974 0.95986 1.20778 0.87457 0.83978 0.85034 1.90504 1.86667 1.41785 1.31474 1.41891 1.05010 1.44166 1.29978 1.19564 0.83105 1.28946 1.14618 0.91116 1.25960 1.03346 0.95841 0.95665 1.69660 1.33746 1.32070 1.20331 0.85004 0.77087 0.78531 0.78173 1.19685 1.18923 1.20126 0.86479 0.91744 0.84107 0.90056 0.92262 0.91796 0.92070 0.95577 0.89267 0.85710 0.90364 0.89571 0.90988 0.86467 0.91827 0.87350 0.89386 0.93273 0.91798 0.89177 0.91159 0.77160 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.62 14.32 67.78 0.97 -4.65 16 2 C -0.14 -3.28 7.75 25.65 0.20 -3.08 16 3 C -0.05 -1.35 1.80 -11.54 -0.02 -1.37 16 4 H 0.03 1.20 7.60 -2.39 -0.02 1.18 16 5 C -0.11 -2.91 5.18 30.60 0.16 -2.75 16 6 C -0.15 -3.88 9.73 71.98 0.70 -3.18 16 7 C -0.13 -3.02 3.71 29.85 0.11 -2.91 16 8 C 0.50 14.78 6.45 87.66 0.57 15.35 16 9 O -0.55 -21.88 13.00 -3.03 -0.04 -21.92 16 10 N -0.62 -13.25 2.74 -846.76 -2.32 -15.57 16 11 C 0.07 0.87 10.24 127.77 1.31 2.18 16 12 C 0.14 2.81 5.58 86.38 0.48 3.29 16 13 C 0.01 0.20 3.37 42.19 0.14 0.35 16 14 H 0.10 1.83 7.77 -2.39 -0.02 1.81 16 15 C -0.11 -2.56 8.00 30.94 0.25 -2.32 16 16 C 0.00 -0.08 6.71 83.57 0.56 0.48 16 17 N -0.45 -16.18 4.67 -906.72 -4.23 -20.41 16 18 C 0.03 1.33 5.31 85.56 0.45 1.79 16 19 C 0.44 23.01 7.62 87.66 0.67 23.68 16 20 O -0.62 -38.12 15.34 -3.07 -0.05 -38.17 16 21 N -0.57 -31.26 5.29 -306.99 -1.62 -32.88 16 22 C -0.33 -19.94 9.68 84.04 0.81 -19.12 16 23 H 0.07 4.59 7.16 -2.91 -0.02 4.57 16 24 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 25 N -0.92 -50.41 13.05 21.66 0.28 -50.12 16 26 Si 0.99 44.64 29.55 68.60 2.03 46.67 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 29 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 30 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.06 2.23 7.83 -2.91 -0.02 2.20 16 32 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.88 5.88 -2.39 -0.01 1.86 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.47 7.38 -2.39 -0.02 1.46 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 2.17 7.40 -2.39 -0.02 2.15 16 39 H 0.12 2.00 8.11 -2.39 -0.02 1.98 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.09 0.79 8.07 -2.39 -0.02 0.77 16 42 H 0.07 0.90 6.44 -2.39 -0.02 0.89 16 43 H 0.12 1.38 8.07 -2.39 -0.02 1.36 16 44 H 0.06 1.65 7.15 -2.39 -0.02 1.63 16 45 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.09 2.12 7.94 -2.39 -0.02 2.10 16 47 H 0.05 2.01 8.13 -2.38 -0.02 1.99 16 48 H 0.06 2.06 7.70 -2.39 -0.02 2.04 16 49 H 0.09 3.24 7.68 -2.39 -0.02 3.22 16 50 H 0.07 2.34 7.56 -2.39 -0.02 2.32 16 51 H 0.39 20.27 7.90 -92.71 -0.73 19.54 16 52 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -82.59 416.82 2.04 -80.55 By element: Atomic # 1 Polarization: 43.95 SS G_CDS: 0.16 Total: 44.11 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 7.83 Total: 7.73 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -7.89 Total: -118.98 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -0.09 Total: -60.09 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -82.59 2.04 -80.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691056254.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.360 kcal (2) G-P(sol) polarization free energy of solvation -82.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds