Wall clock time and date at job start Tue Mar 31 2020 19:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 120.00005 * 2 1 4 4 C 1.52999 * 109.47092 * 359.97438 * 3 2 1 5 5 C 1.53009 * 109.47075 * 239.99738 * 3 2 1 6 6 C 1.52999 * 109.46948 * 299.99828 * 5 3 2 7 7 C 1.50700 * 109.47535 * 119.99879 * 3 2 1 8 8 O 1.21284 * 119.99511 * 359.97438 * 7 3 2 9 9 N 1.34773 * 120.00297 * 179.97438 * 7 3 2 10 10 C 1.46499 * 120.00048 * 179.97438 * 9 7 3 11 11 C 1.53003 * 109.47091 * 180.02562 * 10 9 7 12 12 H 1.09000 * 112.84937 * 316.19776 * 11 10 9 13 13 C 1.53780 * 113.61476 * 87.50040 * 11 10 9 14 14 C 1.53780 * 87.07852 * 139.98128 * 13 11 10 15 15 H 1.08999 * 113.69379 * 89.13295 * 14 13 11 16 16 N 1.46901 * 113.61569 * 220.02240 * 14 13 11 17 17 C 1.46902 * 110.99844 * 252.49748 * 16 14 13 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 14 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00325 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47047 * 89.99811 * 25 23 21 27 27 H 1.48501 * 109.47447 * 210.00167 * 25 23 21 28 28 H 1.48499 * 109.46902 * 330.00508 * 25 23 21 29 29 C 1.53778 * 87.08469 * 334.57036 * 14 13 11 30 30 H 1.08000 * 120.00264 * 0.02562 * 1 2 3 31 31 H 1.08006 * 119.99701 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00264 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47282 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47243 * 300.00084 * 4 3 2 35 35 H 1.08998 * 109.47261 * 60.00162 * 4 3 2 36 36 H 1.08997 * 109.46912 * 59.99563 * 5 3 2 37 37 H 1.08992 * 109.47046 * 179.97438 * 5 3 2 38 38 H 1.08999 * 109.47282 * 59.99769 * 6 5 3 39 39 H 1.08998 * 109.47261 * 180.02562 * 6 5 3 40 40 H 1.09001 * 109.47243 * 300.00098 * 6 5 3 41 41 H 0.97003 * 119.99764 * 359.97438 * 9 7 3 42 42 H 1.08996 * 109.46981 * 60.00046 * 10 9 7 43 43 H 1.08998 * 109.47116 * 299.99974 * 10 9 7 44 44 H 1.09001 * 113.61075 * 25.44029 * 13 11 10 45 45 H 1.08997 * 113.62128 * 254.52896 * 13 11 10 46 46 H 1.00902 * 111.00235 * 128.54985 * 16 14 13 47 47 H 1.09004 * 109.47131 * 60.00016 * 17 16 14 48 48 H 1.08994 * 109.47471 * 299.99766 * 17 16 14 49 49 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 50 50 H 0.96996 * 120.00330 * 179.97438 * 24 23 21 51 51 H 1.08997 * 113.61524 * 139.97962 * 29 14 13 52 52 H 1.09000 * 113.61211 * 270.88268 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2493 6 6 3.9374 0.2232 -1.2492 7 6 2.9299 1.3850 1.2304 8 8 2.9346 0.4722 2.0290 9 7 3.6994 2.4707 1.4434 10 6 4.5412 2.5486 2.6399 11 6 5.3063 3.8736 2.6398 12 1 5.7258 4.1201 1.6644 13 6 4.5318 5.0323 3.2898 14 6 5.8667 5.4697 3.9154 15 1 6.4401 6.1541 3.2902 16 7 5.7420 5.9340 5.3035 17 6 5.9033 7.3917 5.3875 18 6 5.7686 7.8301 6.8230 19 8 5.5594 7.0090 7.6909 20 7 5.8868 9.1339 7.1433 21 6 5.7700 9.5322 8.4500 22 1 5.5837 8.8010 9.2227 23 6 5.8912 10.8764 8.7802 24 7 6.1174 11.7661 7.8399 25 14 5.7314 11.4190 10.5605 26 1 7.0680 11.3954 11.2071 27 1 5.1816 12.7976 10.6103 28 1 4.8175 10.4953 11.2793 29 6 6.3139 4.0033 3.7943 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.6142 3.4119 -0.0011 34 1 0.4429 2.4100 -0.8909 35 1 0.4422 2.4105 0.8891 36 1 2.3165 1.3282 -2.1392 37 1 3.4878 2.3302 -1.2495 38 1 3.3925 -0.7208 -1.2491 39 1 4.5644 0.2811 -2.1389 40 1 4.5640 0.2809 -0.3591 41 1 3.6959 3.2006 0.8045 42 1 5.2492 1.7199 2.6406 43 1 3.9142 2.4917 3.5296 44 1 3.7925 4.7069 4.0217 45 1 4.1313 5.7473 2.5712 46 1 6.4019 5.4621 5.9034 47 1 5.1349 7.8776 4.7860 48 1 6.8881 7.6705 5.0130 49 1 6.0544 9.7907 6.4494 50 1 6.2017 12.7045 8.0703 51 1 7.3520 3.8877 3.4829 52 1 6.0617 3.3967 4.6640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691111659.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:18 Heat of formation + Delta-G solvation = -45.211773 kcal Electronic energy + Delta-G solvation = -28556.142398 eV Core-core repulsion = 24556.249750 eV Total energy + Delta-G solvation = -3999.892648 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.74185 -39.42970 -38.07040 -36.94227 -35.11453 -34.05104 -33.23094 -32.44016 -31.20011 -30.07952 -28.16001 -26.38616 -25.76597 -25.19521 -24.02312 -23.14150 -21.71988 -21.16853 -19.81461 -19.15573 -18.68045 -17.86826 -17.28152 -16.52558 -16.20223 -16.04018 -15.60908 -15.35344 -15.09266 -14.80192 -14.54180 -14.44238 -14.24166 -14.04083 -13.80420 -13.40197 -13.23200 -13.04402 -12.72243 -12.49754 -12.41287 -12.38771 -12.29210 -12.22283 -11.72417 -11.61474 -11.53038 -11.49816 -11.31427 -11.05661 -10.94714 -10.93463 -10.71165 -10.39261 -10.35709 -10.21000 -10.04388 -9.62302 -9.50715 -9.27166 -8.43805 -8.06319 -7.95480 -6.41555 -3.82336 1.90334 2.42629 2.99070 3.18049 3.26646 3.32966 3.91565 4.10250 4.11549 4.24519 4.30845 4.39280 4.41428 4.51954 4.64689 4.74987 4.75545 4.79743 4.91839 5.03460 5.10370 5.13627 5.18461 5.20916 5.24813 5.28906 5.40192 5.48292 5.50780 5.53037 5.59574 5.63338 5.68370 5.73571 5.77779 5.81532 5.85807 5.92979 5.95682 6.10625 6.20331 6.25462 6.27525 6.38892 6.40804 7.23944 7.29820 7.55481 7.67768 7.99196 8.06858 8.61681 9.18259 9.54734 10.06324 10.76208 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024702 B = 0.001579 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.238303 B =17724.624753 C =18018.929815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 C -0.054 4.054 4 C -0.145 4.145 5 C -0.106 4.106 6 C -0.157 4.157 7 C 0.527 3.473 8 O -0.536 6.536 9 N -0.726 5.726 10 C 0.131 3.869 11 C -0.125 4.125 12 H 0.093 0.907 13 C -0.120 4.120 14 C 0.059 3.941 15 H 0.071 0.929 16 N -0.656 5.656 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C -0.132 4.132 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.399 0.601 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.063 0.937 46 H 0.351 0.649 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.068 0.932 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.821 -17.832 -23.805 30.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.142 4.142 3 C -0.057 4.057 4 C -0.203 4.203 5 C -0.144 4.144 6 C -0.215 4.215 7 C 0.312 3.688 8 O -0.412 6.412 9 N -0.378 5.378 10 C 0.008 3.992 11 C -0.144 4.144 12 H 0.111 0.889 13 C -0.159 4.159 14 C -0.051 4.051 15 H 0.089 0.911 16 N -0.289 5.289 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.170 4.170 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.233 0.767 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.081 0.919 46 H 0.171 0.829 47 H 0.103 0.897 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.604 -18.796 -22.592 29.918 hybrid contribution 1.035 1.331 -0.014 1.686 sum -4.569 -17.465 -22.606 28.930 Atomic orbital electron populations 1.23985 0.95897 1.02298 1.00900 1.22482 0.95515 0.96637 0.99519 1.19988 0.95624 0.96068 0.94037 1.21958 0.98843 0.96254 1.03217 1.21556 0.97251 0.99541 0.96060 1.21853 0.99053 0.98584 1.01979 1.20352 0.79640 0.81882 0.86900 1.90713 1.65762 1.37844 1.46865 1.46015 1.45188 1.20890 1.25708 1.21387 0.93083 0.97052 0.87675 1.22646 0.98041 0.94737 0.99003 0.88861 1.23191 0.97315 0.96293 0.99062 1.22981 0.96996 0.94570 0.90591 0.91128 1.60232 1.58031 1.04388 1.06226 1.21730 1.00152 0.89402 0.96979 1.19845 0.84518 0.83479 0.89581 1.90525 1.54068 1.52181 1.49956 1.41870 1.62763 1.05988 1.09482 1.19711 1.45922 0.92627 0.84629 0.87926 1.25259 0.97299 0.95547 0.99857 1.69611 1.49382 1.02435 1.32951 0.85853 0.78593 0.77816 0.82001 1.20434 1.20924 1.19406 1.23193 0.98438 0.96943 0.98435 0.87883 0.88237 0.86791 0.91754 0.90957 0.91503 0.90576 0.91284 0.92085 0.92278 0.92636 0.76663 0.91557 0.90959 0.88869 0.91862 0.82909 0.89716 0.93924 0.77484 0.91898 0.91300 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 13.70 29.02 0.40 -0.98 16 2 C -0.12 -1.00 7.29 -36.03 -0.26 -1.26 16 3 C -0.05 -0.39 0.63 -156.81 -0.10 -0.49 16 4 C -0.15 -0.83 7.02 37.16 0.26 -0.57 16 5 C -0.11 -0.57 4.88 -26.73 -0.13 -0.70 16 6 C -0.16 -0.97 9.41 37.16 0.35 -0.62 16 7 C 0.53 5.27 5.21 -10.99 -0.06 5.21 16 8 O -0.54 -7.67 16.03 5.55 0.09 -7.58 16 9 N -0.73 -5.79 5.34 -60.30 -0.32 -6.11 16 10 C 0.13 1.19 5.51 -4.04 -0.02 1.17 16 11 C -0.13 -1.00 3.75 -89.81 -0.34 -1.34 16 12 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 13 C -0.12 -1.23 7.43 -25.92 -0.19 -1.42 16 14 C 0.06 0.68 4.14 -66.90 -0.28 0.40 16 15 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 16 N -0.66 -10.41 6.18 -107.13 -0.66 -11.07 16 17 C 0.05 0.88 6.01 -4.97 -0.03 0.85 16 18 C 0.44 10.45 7.82 -10.98 -0.09 10.37 16 19 O -0.58 -15.98 15.78 5.55 0.09 -15.90 16 20 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 25 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 29 C -0.13 -1.24 7.21 -25.92 -0.19 -1.43 16 30 H 0.10 0.63 5.69 -52.49 -0.30 0.33 16 31 H 0.10 0.62 8.06 -52.48 -0.42 0.19 16 32 H 0.11 0.98 7.00 -52.49 -0.37 0.62 16 33 H 0.06 0.29 7.57 -51.93 -0.39 -0.10 16 34 H 0.07 0.32 7.50 -51.93 -0.39 -0.07 16 35 H 0.07 0.46 7.50 -51.93 -0.39 0.07 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.28 7.56 -51.93 -0.39 -0.11 16 38 H 0.06 0.39 6.62 -51.93 -0.34 0.05 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.05 0.43 7.22 -51.93 -0.37 0.06 16 41 H 0.40 2.20 7.31 -40.82 -0.30 1.91 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 44 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.35 5.77 8.25 -39.29 -0.32 5.44 16 47 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 48 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 49 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 418.20 15.07 6.30 6.30 Total: -1.00 -33.60 418.20 -8.63 -42.23 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -8.85 Total: 13.16 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -0.91 Total: 1.13 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.32 Total: -55.46 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.18 Total: -23.48 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.60 -8.63 -42.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691111659.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.981 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds