Wall clock time and date at job start Tue Mar 31 2020 19:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 120.00005 * 2 1 4 4 C 1.52999 * 109.47092 * 359.97438 * 3 2 1 5 5 C 1.53009 * 109.47075 * 239.99738 * 3 2 1 6 6 C 1.52999 * 109.46948 * 299.99828 * 5 3 2 7 7 C 1.50700 * 109.47535 * 119.99879 * 3 2 1 8 8 O 1.21284 * 119.99511 * 359.97438 * 7 3 2 9 9 N 1.34773 * 120.00297 * 179.97438 * 7 3 2 10 10 C 1.46499 * 120.00048 * 179.97438 * 9 7 3 11 11 C 1.53003 * 109.47091 * 180.02562 * 10 9 7 12 12 H 1.09000 * 112.84937 * 316.19776 * 11 10 9 13 13 C 1.53780 * 113.61476 * 87.50040 * 11 10 9 14 14 C 1.53780 * 87.07852 * 139.98128 * 13 11 10 15 15 H 1.08999 * 113.69379 * 89.13295 * 14 13 11 16 16 N 1.46901 * 113.61569 * 220.02240 * 14 13 11 17 17 C 1.46902 * 110.99844 * 252.49748 * 16 14 13 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 14 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00325 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47047 * 89.99811 * 25 23 21 27 27 H 1.48501 * 109.47447 * 210.00167 * 25 23 21 28 28 H 1.48499 * 109.46902 * 330.00508 * 25 23 21 29 29 C 1.53778 * 87.08469 * 334.57036 * 14 13 11 30 30 H 1.08000 * 120.00264 * 0.02562 * 1 2 3 31 31 H 1.08006 * 119.99701 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00264 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47282 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47243 * 300.00084 * 4 3 2 35 35 H 1.08998 * 109.47261 * 60.00162 * 4 3 2 36 36 H 1.08997 * 109.46912 * 59.99563 * 5 3 2 37 37 H 1.08992 * 109.47046 * 179.97438 * 5 3 2 38 38 H 1.08999 * 109.47282 * 59.99769 * 6 5 3 39 39 H 1.08998 * 109.47261 * 180.02562 * 6 5 3 40 40 H 1.09001 * 109.47243 * 300.00098 * 6 5 3 41 41 H 0.97003 * 119.99764 * 359.97438 * 9 7 3 42 42 H 1.08996 * 109.46981 * 60.00046 * 10 9 7 43 43 H 1.08998 * 109.47116 * 299.99974 * 10 9 7 44 44 H 1.09001 * 113.61075 * 25.44029 * 13 11 10 45 45 H 1.08997 * 113.62128 * 254.52896 * 13 11 10 46 46 H 1.00902 * 111.00235 * 128.54985 * 16 14 13 47 47 H 1.09004 * 109.47131 * 60.00016 * 17 16 14 48 48 H 1.08994 * 109.47471 * 299.99766 * 17 16 14 49 49 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 50 50 H 0.96996 * 120.00330 * 179.97438 * 24 23 21 51 51 H 1.08997 * 113.61524 * 139.97962 * 29 14 13 52 52 H 1.09000 * 113.61211 * 270.88268 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2493 6 6 3.9374 0.2232 -1.2492 7 6 2.9299 1.3850 1.2304 8 8 2.9346 0.4722 2.0290 9 7 3.6994 2.4707 1.4434 10 6 4.5412 2.5486 2.6399 11 6 5.3063 3.8736 2.6398 12 1 5.7258 4.1201 1.6644 13 6 4.5318 5.0323 3.2898 14 6 5.8667 5.4697 3.9154 15 1 6.4401 6.1541 3.2902 16 7 5.7420 5.9340 5.3035 17 6 5.9033 7.3917 5.3875 18 6 5.7686 7.8301 6.8230 19 8 5.5594 7.0090 7.6909 20 7 5.8868 9.1339 7.1433 21 6 5.7700 9.5322 8.4500 22 1 5.5837 8.8010 9.2227 23 6 5.8912 10.8764 8.7802 24 7 6.1174 11.7661 7.8399 25 14 5.7314 11.4190 10.5605 26 1 7.0680 11.3954 11.2071 27 1 5.1816 12.7976 10.6103 28 1 4.8175 10.4953 11.2793 29 6 6.3139 4.0033 3.7943 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.6142 3.4119 -0.0011 34 1 0.4429 2.4100 -0.8909 35 1 0.4422 2.4105 0.8891 36 1 2.3165 1.3282 -2.1392 37 1 3.4878 2.3302 -1.2495 38 1 3.3925 -0.7208 -1.2491 39 1 4.5644 0.2811 -2.1389 40 1 4.5640 0.2809 -0.3591 41 1 3.6959 3.2006 0.8045 42 1 5.2492 1.7199 2.6406 43 1 3.9142 2.4917 3.5296 44 1 3.7925 4.7069 4.0217 45 1 4.1313 5.7473 2.5712 46 1 6.4019 5.4621 5.9034 47 1 5.1349 7.8776 4.7860 48 1 6.8881 7.6705 5.0130 49 1 6.0544 9.7907 6.4494 50 1 6.2017 12.7045 8.0703 51 1 7.3520 3.8877 3.4829 52 1 6.0617 3.3967 4.6640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691111659.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:17 Heat of formation + Delta-G solvation = -69.534446 kcal Electronic energy + Delta-G solvation = -28557.197108 eV Core-core repulsion = 24556.249750 eV Total energy + Delta-G solvation = -4000.947358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.46674 -40.45542 -39.77181 -37.61333 -36.24085 -35.81132 -34.46437 -33.24639 -32.95894 -30.64947 -29.16368 -27.78592 -26.61269 -25.99318 -25.50424 -23.67038 -22.59384 -21.89034 -21.18755 -20.45252 -19.89314 -19.35802 -17.99873 -17.65536 -17.27576 -16.85463 -16.82662 -16.49726 -16.27493 -15.88395 -15.83043 -15.47129 -15.28222 -14.98832 -14.86429 -14.81681 -14.19026 -13.88862 -13.54741 -13.52507 -13.49620 -13.29585 -13.24845 -13.00622 -12.86480 -12.77606 -12.68655 -12.44401 -12.39935 -12.19152 -12.13258 -11.82518 -11.77852 -11.60410 -11.51233 -11.42706 -11.14743 -10.77564 -10.33662 -10.24645 -10.05451 -10.02106 -9.28332 -8.47353 -5.96170 1.31207 1.37499 1.41397 1.54175 1.66720 2.04899 2.28608 2.31582 2.97952 3.19890 3.48110 3.57518 3.63170 3.68155 3.80511 3.91156 3.93733 3.99709 4.10183 4.26695 4.33884 4.37218 4.41760 4.45787 4.49834 4.60283 4.62655 4.67915 4.73018 4.77936 4.86018 4.92273 4.95533 4.98095 5.04516 5.07740 5.13653 5.17933 5.27081 5.29426 5.38217 5.39949 5.41956 5.55681 5.70563 5.83572 5.94332 6.20918 6.44038 6.58228 6.59954 7.12127 7.28103 7.55776 8.11475 8.69963 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024702 B = 0.001579 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.238303 B =17724.624753 C =18018.929815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.143 4.143 3 C -0.049 4.049 4 C -0.145 4.145 5 C -0.102 4.102 6 C -0.157 4.157 7 C 0.522 3.478 8 O -0.588 6.588 9 N -0.712 5.712 10 C 0.135 3.865 11 C -0.100 4.100 12 H 0.124 0.876 13 C -0.121 4.121 14 C 0.053 3.947 15 H 0.090 0.910 16 N -0.675 5.675 17 C 0.066 3.934 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.275 1.275 29 C -0.130 4.130 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.415 0.585 42 H 0.060 0.940 43 H 0.046 0.954 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.343 0.657 47 H 0.102 0.898 48 H 0.068 0.932 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.086 0.914 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 -16.546 -26.261 31.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.161 4.161 3 C -0.052 4.052 4 C -0.202 4.202 5 C -0.140 4.140 6 C -0.215 4.215 7 C 0.309 3.691 8 O -0.468 6.468 9 N -0.364 5.364 10 C 0.011 3.989 11 C -0.119 4.119 12 H 0.142 0.858 13 C -0.159 4.159 14 C -0.057 4.057 15 H 0.108 0.892 16 N -0.307 5.307 17 C -0.066 4.066 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.200 1.200 29 C -0.168 4.168 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.252 0.748 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.163 0.837 47 H 0.120 0.880 48 H 0.086 0.914 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.105 0.895 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.391 -17.468 -25.112 31.061 hybrid contribution 0.953 0.864 0.742 1.485 sum -4.438 -16.604 -24.370 29.821 Atomic orbital electron populations 1.24166 0.95660 1.03182 0.99629 1.22552 0.96029 0.96810 1.00739 1.20006 0.95675 0.96207 0.93343 1.21990 0.98652 0.96151 1.03393 1.21594 0.97010 0.99895 0.95483 1.21847 0.99172 0.98814 1.01626 1.20957 0.79536 0.81353 0.87208 1.90687 1.67495 1.39765 1.48825 1.45895 1.44235 1.20875 1.25433 1.21240 0.92748 0.97646 0.87245 1.22535 0.96659 0.92953 0.99796 0.85759 1.23141 0.96410 0.97437 0.98923 1.23202 0.98303 0.95787 0.88373 0.89179 1.60253 1.58348 1.03252 1.08852 1.21586 1.02059 0.90665 0.92293 1.20985 0.82294 0.82431 0.91988 1.90492 1.55460 1.53130 1.52158 1.41935 1.63361 1.06887 1.08824 1.19665 1.48356 0.92993 0.85538 0.90483 1.26026 0.96245 0.95019 1.03892 1.69665 1.48965 1.02847 1.34510 0.84932 0.78700 0.77622 0.77095 1.19554 1.19420 1.19986 1.23165 0.99853 0.95279 0.98511 0.86669 0.87728 0.88226 0.90146 0.89149 0.92948 0.88985 0.89388 0.92960 0.90837 0.94635 0.74810 0.92170 0.93556 0.91504 0.90196 0.83732 0.88005 0.91406 0.76919 0.91262 0.89520 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 13.70 67.78 0.93 -1.63 16 2 C -0.14 -2.30 7.29 25.65 0.19 -2.11 16 3 C -0.05 -0.65 0.63 -53.67 -0.03 -0.68 16 4 C -0.14 -1.34 7.02 71.98 0.51 -0.83 16 5 C -0.10 -0.85 4.88 30.60 0.15 -0.70 16 6 C -0.16 -1.79 9.41 71.98 0.68 -1.11 16 7 C 0.52 10.33 5.21 87.66 0.46 10.79 16 8 O -0.59 -17.62 16.03 -3.04 -0.05 -17.67 16 9 N -0.71 -10.42 5.34 -463.07 -2.47 -12.89 16 10 C 0.14 2.38 5.51 86.38 0.48 2.86 16 11 C -0.10 -1.37 3.75 -10.27 -0.04 -1.41 16 12 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 13 C -0.12 -2.24 7.43 31.12 0.23 -2.01 16 14 C 0.05 1.10 4.14 45.44 0.19 1.29 16 15 H 0.09 1.59 7.87 -2.39 -0.02 1.58 16 16 N -0.67 -20.92 6.18 -492.85 -3.05 -23.96 16 17 C 0.07 2.24 6.01 85.56 0.51 2.76 16 18 C 0.44 20.91 7.82 87.66 0.69 21.59 16 19 O -0.63 -35.35 15.78 -3.07 -0.05 -35.39 16 20 N -0.57 -29.56 5.29 -306.98 -1.62 -31.19 16 21 C -0.34 -19.27 9.68 84.04 0.81 -18.46 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 23 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 24 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 25 Si 0.99 43.14 29.55 68.60 2.03 45.16 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 29 C -0.13 -2.24 7.21 31.12 0.22 -2.01 16 30 H 0.12 1.24 5.69 -2.91 -0.02 1.22 16 31 H 0.10 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.10 1.84 7.00 -2.91 -0.02 1.82 16 33 H 0.08 0.48 7.57 -2.39 -0.02 0.46 16 34 H 0.09 0.53 7.50 -2.39 -0.02 0.51 16 35 H 0.05 0.65 7.50 -2.39 -0.02 0.63 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 0.41 7.56 -2.39 -0.02 0.39 16 38 H 0.05 0.67 6.62 -2.39 -0.02 0.66 16 39 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 40 H 0.03 0.54 7.22 -2.39 -0.02 0.52 16 41 H 0.41 3.37 7.31 -92.71 -0.68 2.69 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 1.07 7.84 -2.39 -0.02 1.06 16 44 H 0.07 1.63 7.89 -2.39 -0.02 1.61 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.34 11.35 8.25 -89.69 -0.74 10.61 16 47 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 48 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 49 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 50 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 51 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 Total: -1.00 -75.86 418.20 0.29 -75.58 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -1.22 Total: 41.42 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 6.43 Total: 8.14 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -6.86 Total: -117.24 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.10 Total: -53.06 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -75.86 0.29 -75.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691111659.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.042 kcal (2) G-P(sol) polarization free energy of solvation -75.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds