Wall clock time and date at job start Tue Mar 31 2020 19:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 119.99866 * 2 1 4 4 C 1.53007 * 109.47059 * 240.03422 * 3 2 1 5 5 C 1.52997 * 109.47345 * 0.03315 * 3 2 1 6 6 C 1.53005 * 109.46817 * 174.80187 * 5 3 2 7 7 C 1.50703 * 109.47301 * 120.03729 * 3 2 1 8 8 O 1.21286 * 119.99690 * 353.43876 * 7 3 2 9 9 N 1.34769 * 120.00317 * 173.43596 * 7 3 2 10 10 C 1.46497 * 120.00236 * 176.07239 * 9 7 3 11 11 C 1.53000 * 109.47423 * 179.97438 * 10 9 7 12 12 H 1.09001 * 112.84818 * 43.80159 * 11 10 9 13 13 C 1.53782 * 113.61563 * 174.99698 * 11 10 9 14 14 C 1.53774 * 87.07923 * 139.98133 * 13 11 10 15 15 H 1.09004 * 113.61549 * 89.20436 * 14 13 11 16 16 N 1.46908 * 113.61435 * 220.01711 * 14 13 11 17 17 C 1.46896 * 110.99918 * 205.00232 * 16 14 13 18 18 C 1.50699 * 109.46908 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00041 * 359.97438 * 18 17 16 20 20 N 1.34782 * 120.00143 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00363 * 179.72216 * 20 18 17 22 22 H 1.08001 * 119.99965 * 0.27540 * 21 20 18 23 23 C 1.38947 * 120.00407 * 180.27492 * 21 20 18 24 24 N 1.31415 * 119.99956 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00238 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47343 * 90.00037 * 25 23 21 27 27 H 1.48501 * 109.47508 * 210.00230 * 25 23 21 28 28 H 1.48504 * 109.46974 * 330.00029 * 25 23 21 29 29 C 1.53776 * 87.08618 * 334.56927 * 14 13 11 30 30 H 1.07994 * 120.00021 * 185.96388 * 1 2 3 31 31 H 1.07997 * 119.99761 * 5.96922 * 1 2 3 32 32 H 1.07999 * 119.99877 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.47323 * 300.00360 * 4 3 2 34 34 H 1.09003 * 109.47123 * 60.00247 * 4 3 2 35 35 H 1.09005 * 109.47042 * 180.02562 * 4 3 2 36 36 H 1.08994 * 109.47333 * 294.80001 * 5 3 2 37 37 H 1.09002 * 109.47429 * 54.80412 * 5 3 2 38 38 H 1.08994 * 109.47237 * 301.60112 * 6 5 3 39 39 H 1.08996 * 109.47308 * 61.61071 * 6 5 3 40 40 H 1.09002 * 109.46771 * 181.60339 * 6 5 3 41 41 H 0.97000 * 120.00202 * 356.07096 * 9 7 3 42 42 H 1.08994 * 109.47418 * 59.99713 * 10 9 7 43 43 H 1.08998 * 109.47056 * 299.99877 * 10 9 7 44 44 H 1.08998 * 113.61333 * 25.43557 * 13 11 10 45 45 H 1.08999 * 113.61327 * 254.52873 * 13 11 10 46 46 H 1.00900 * 110.99669 * 328.95808 * 16 14 13 47 47 H 1.09005 * 109.47661 * 60.00116 * 17 16 14 48 48 H 1.09006 * 109.47465 * 300.00178 * 17 16 14 49 49 H 0.97008 * 119.99569 * 0.02562 * 20 18 17 50 50 H 0.96999 * 119.99964 * 179.97438 * 24 23 21 51 51 H 1.08993 * 113.61945 * 139.97877 * 29 14 13 52 52 H 1.09004 * 113.61374 * 270.89062 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9425 1.3865 -1.2497 5 6 1.0693 2.4680 0.0008 6 6 1.8299 3.7891 0.1315 7 6 2.9306 1.3846 1.2300 8 8 2.8484 0.5294 2.0861 9 7 3.7974 2.4058 1.3786 10 6 4.5779 2.5305 2.6121 11 6 5.4777 3.7648 2.5237 12 1 4.9631 4.6354 2.1172 13 6 6.2522 4.0566 3.8198 14 6 7.4532 4.4142 2.9286 15 1 7.4808 5.4631 2.6332 16 7 8.7390 3.9357 3.4540 17 6 9.8504 4.7542 2.9515 18 6 11.1499 4.2341 3.5101 19 8 11.1500 3.2761 4.2539 20 7 12.3119 4.8334 3.1830 21 6 13.4935 4.3638 3.6956 22 1 13.4937 3.5108 4.3580 23 6 14.6910 4.9852 3.3629 24 7 14.6908 6.0235 2.5573 25 14 16.3009 4.3458 4.0620 26 1 16.8656 3.3213 3.1472 27 1 17.2617 5.4696 4.2002 28 1 16.0552 3.7379 5.3945 29 6 6.8395 3.4886 1.8650 30 1 -0.5400 -0.9302 0.0972 31 1 -0.5399 0.9302 -0.0973 32 1 1.8500 -0.9353 -0.0004 33 1 3.6508 0.5580 -1.2504 34 1 2.3153 1.3291 -2.1394 35 1 3.4878 2.3303 -1.2495 36 1 0.5051 2.4643 -0.9317 37 1 0.3833 2.3591 0.8409 38 1 2.4165 3.7813 1.0502 39 1 2.4950 3.9116 -0.7233 40 1 1.1200 4.6157 0.1608 41 1 3.9044 3.0583 0.6689 42 1 5.1939 1.6410 2.7437 43 1 3.9020 2.6332 3.4610 44 1 6.4152 3.1745 4.4390 45 1 5.8586 4.9032 4.3825 46 1 8.7322 3.9152 4.4628 47 1 9.7092 5.7893 3.2628 48 1 9.8766 4.7026 1.8630 49 1 12.3118 5.5999 2.5883 50 1 15.5267 6.4575 2.3254 51 1 6.9201 3.8765 0.8496 52 1 7.1631 2.4512 1.9499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691111662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:21 Heat of formation + Delta-G solvation = -32.982708 kcal Electronic energy + Delta-G solvation = -28709.079546 eV Core-core repulsion = 24709.717190 eV Total energy + Delta-G solvation = -3999.362356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89837 -39.42571 -38.06782 -36.97563 -35.29053 -34.08794 -33.30447 -32.07500 -31.19639 -30.17702 -28.22847 -26.37594 -25.77282 -25.36151 -24.07863 -23.11780 -21.67002 -21.14939 -19.83593 -19.19440 -18.83379 -17.86855 -16.93234 -16.65978 -16.09213 -16.07502 -15.75977 -15.35140 -15.22915 -14.92905 -14.50512 -14.45751 -14.18440 -13.93001 -13.75187 -13.42944 -13.38727 -12.95215 -12.82539 -12.56895 -12.48730 -12.39304 -12.27563 -12.15535 -11.86940 -11.59982 -11.52968 -11.45874 -11.23260 -11.05488 -10.97184 -10.93803 -10.71111 -10.39324 -10.35006 -10.20926 -10.02117 -9.64497 -9.50670 -9.19173 -8.43813 -8.06295 -7.95452 -6.41555 -3.82289 1.87573 2.39409 2.99289 3.18238 3.26751 3.32750 3.91550 4.10451 4.11136 4.20724 4.30048 4.38650 4.40673 4.52040 4.64150 4.74039 4.75067 4.82067 4.92599 4.98765 5.02202 5.09090 5.20147 5.22799 5.25052 5.28722 5.34915 5.43905 5.49036 5.50682 5.60317 5.65321 5.68519 5.72056 5.77507 5.78252 5.81541 5.92662 5.95397 6.09681 6.19841 6.24845 6.25762 6.38558 6.38689 7.21550 7.29752 7.55494 7.67762 7.97411 8.06840 8.61736 9.18297 9.54746 10.06368 10.76205 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026732 B = 0.001584 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.167120 B =17674.875207 C =17742.884834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 C -0.053 4.053 4 C -0.141 4.141 5 C -0.112 4.112 6 C -0.183 4.183 7 C 0.526 3.474 8 O -0.534 6.534 9 N -0.727 5.727 10 C 0.128 3.872 11 C -0.126 4.126 12 H 0.093 0.907 13 C -0.131 4.131 14 C 0.059 3.941 15 H 0.071 0.929 16 N -0.656 5.656 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.121 4.121 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.403 0.597 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.351 0.649 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.063 0.937 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.678 -1.203 -8.993 30.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.141 4.141 3 C -0.057 4.057 4 C -0.199 4.199 5 C -0.150 4.150 6 C -0.241 4.241 7 C 0.311 3.689 8 O -0.410 6.410 9 N -0.382 5.382 10 C 0.004 3.996 11 C -0.145 4.145 12 H 0.111 0.889 13 C -0.170 4.170 14 C -0.051 4.051 15 H 0.089 0.911 16 N -0.289 5.289 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.159 4.159 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.241 0.759 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.171 0.829 47 H 0.061 0.939 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.081 0.919 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -28.463 -2.821 -8.384 29.806 hybrid contribution 0.857 1.390 0.020 1.633 sum -27.606 -1.431 -8.364 28.881 Atomic orbital electron populations 1.23939 0.95848 1.02323 1.00983 1.22489 0.95683 0.96551 0.99387 1.19953 0.95710 0.95698 0.94301 1.21897 0.99409 1.02696 0.95849 1.21624 0.97357 0.92878 1.03120 1.22377 1.01488 0.97072 1.03128 1.20355 0.79980 0.80904 0.87627 1.90714 1.67881 1.38765 1.43678 1.46481 1.42114 1.29260 1.20329 1.21416 0.93611 0.98125 0.86415 1.22652 0.95186 0.97457 0.99201 0.88881 1.23192 0.95528 1.02317 0.95944 1.22980 0.88431 0.96924 0.96791 0.91118 1.60229 1.00245 1.53311 1.15080 1.21730 0.91241 0.94583 1.00707 1.19845 0.84806 0.86598 0.86178 1.90523 1.86823 1.29273 1.40108 1.41870 1.05170 1.29653 1.43404 1.19711 0.82913 1.13920 1.26363 0.87927 1.25258 0.99688 0.96052 0.96947 1.69614 1.28338 1.21114 1.35309 0.85854 0.80853 0.78121 0.79432 1.20394 1.20948 1.19431 1.23195 0.93257 1.01637 0.97809 0.88171 0.87974 0.86899 0.91672 0.91133 0.91693 0.90414 0.91006 0.90641 0.91999 0.91956 0.75909 0.90861 0.91491 0.88792 0.91283 0.82904 0.93928 0.89714 0.77486 0.91901 0.91861 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 13.66 29.01 0.40 -0.94 16 2 C -0.12 -1.01 8.01 -36.03 -0.29 -1.30 16 3 C -0.05 -0.39 0.72 -156.81 -0.11 -0.50 16 4 C -0.14 -0.80 8.05 37.16 0.30 -0.50 16 5 C -0.11 -0.63 3.65 -26.73 -0.10 -0.72 16 6 C -0.18 -0.85 8.28 37.16 0.31 -0.54 16 7 C 0.53 5.34 6.24 -10.99 -0.07 5.27 16 8 O -0.53 -7.76 16.06 5.55 0.09 -7.67 16 9 N -0.73 -5.84 3.75 -60.30 -0.23 -6.07 16 10 C 0.13 1.16 5.51 -4.04 -0.02 1.13 16 11 C -0.13 -1.00 3.75 -89.81 -0.34 -1.34 16 12 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 13 C -0.13 -1.23 7.21 -25.92 -0.19 -1.42 16 14 C 0.06 0.68 4.14 -66.90 -0.28 0.40 16 15 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 16 N -0.66 -10.37 6.18 -107.13 -0.66 -11.03 16 17 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 18 C 0.44 10.44 7.82 -10.98 -0.09 10.35 16 19 O -0.58 -15.97 15.78 5.55 0.09 -15.88 16 20 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 21 C -0.30 -8.41 9.68 -14.94 -0.14 -8.55 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 25 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 C -0.12 -1.23 7.43 -25.92 -0.19 -1.42 16 30 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.10 0.57 5.73 -52.49 -0.30 0.27 16 32 H 0.11 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.29 5.65 -51.93 -0.29 -0.01 16 36 H 0.08 0.34 7.71 -51.93 -0.40 -0.06 16 37 H 0.07 0.46 7.26 -51.93 -0.38 0.08 16 38 H 0.08 0.41 5.09 -51.93 -0.26 0.15 16 39 H 0.06 0.22 6.50 -51.93 -0.34 -0.12 16 40 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.40 2.34 5.11 -40.82 -0.21 2.13 16 42 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.35 5.75 8.25 -39.29 -0.32 5.43 16 47 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 48 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 49 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 52 H 0.09 1.14 7.90 -51.93 -0.41 0.73 16 LS Contribution 412.41 15.07 6.22 6.22 Total: -1.00 -33.56 412.41 -8.43 -41.99 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -8.64 Total: 13.32 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -0.94 Total: 1.27 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.22 Total: -55.35 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: 0.18 Total: -23.55 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.56 -8.43 -41.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691111662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.007 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds