Wall clock time and date at job start Tue Mar 31 2020 19:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 119.99866 * 2 1 4 4 C 1.53007 * 109.47059 * 240.03422 * 3 2 1 5 5 C 1.52997 * 109.47345 * 0.03315 * 3 2 1 6 6 C 1.53005 * 109.46817 * 174.80187 * 5 3 2 7 7 C 1.50703 * 109.47301 * 120.03729 * 3 2 1 8 8 O 1.21286 * 119.99690 * 353.43876 * 7 3 2 9 9 N 1.34769 * 120.00317 * 173.43596 * 7 3 2 10 10 C 1.46497 * 120.00236 * 176.07239 * 9 7 3 11 11 C 1.53000 * 109.47423 * 179.97438 * 10 9 7 12 12 H 1.09001 * 112.84818 * 43.80159 * 11 10 9 13 13 C 1.53782 * 113.61563 * 174.99698 * 11 10 9 14 14 C 1.53774 * 87.07923 * 139.98133 * 13 11 10 15 15 H 1.09004 * 113.61549 * 89.20436 * 14 13 11 16 16 N 1.46908 * 113.61435 * 220.01711 * 14 13 11 17 17 C 1.46896 * 110.99918 * 205.00232 * 16 14 13 18 18 C 1.50699 * 109.46908 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00041 * 359.97438 * 18 17 16 20 20 N 1.34782 * 120.00143 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00363 * 179.72216 * 20 18 17 22 22 H 1.08001 * 119.99965 * 0.27540 * 21 20 18 23 23 C 1.38947 * 120.00407 * 180.27492 * 21 20 18 24 24 N 1.31415 * 119.99956 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00238 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47343 * 90.00037 * 25 23 21 27 27 H 1.48501 * 109.47508 * 210.00230 * 25 23 21 28 28 H 1.48504 * 109.46974 * 330.00029 * 25 23 21 29 29 C 1.53776 * 87.08618 * 334.56927 * 14 13 11 30 30 H 1.07994 * 120.00021 * 185.96388 * 1 2 3 31 31 H 1.07997 * 119.99761 * 5.96922 * 1 2 3 32 32 H 1.07999 * 119.99877 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.47323 * 300.00360 * 4 3 2 34 34 H 1.09003 * 109.47123 * 60.00247 * 4 3 2 35 35 H 1.09005 * 109.47042 * 180.02562 * 4 3 2 36 36 H 1.08994 * 109.47333 * 294.80001 * 5 3 2 37 37 H 1.09002 * 109.47429 * 54.80412 * 5 3 2 38 38 H 1.08994 * 109.47237 * 301.60112 * 6 5 3 39 39 H 1.08996 * 109.47308 * 61.61071 * 6 5 3 40 40 H 1.09002 * 109.46771 * 181.60339 * 6 5 3 41 41 H 0.97000 * 120.00202 * 356.07096 * 9 7 3 42 42 H 1.08994 * 109.47418 * 59.99713 * 10 9 7 43 43 H 1.08998 * 109.47056 * 299.99877 * 10 9 7 44 44 H 1.08998 * 113.61333 * 25.43557 * 13 11 10 45 45 H 1.08999 * 113.61327 * 254.52873 * 13 11 10 46 46 H 1.00900 * 110.99669 * 328.95808 * 16 14 13 47 47 H 1.09005 * 109.47661 * 60.00116 * 17 16 14 48 48 H 1.09006 * 109.47465 * 300.00178 * 17 16 14 49 49 H 0.97008 * 119.99569 * 0.02562 * 20 18 17 50 50 H 0.96999 * 119.99964 * 179.97438 * 24 23 21 51 51 H 1.08993 * 113.61945 * 139.97877 * 29 14 13 52 52 H 1.09004 * 113.61374 * 270.89062 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9425 1.3865 -1.2497 5 6 1.0693 2.4680 0.0008 6 6 1.8299 3.7891 0.1315 7 6 2.9306 1.3846 1.2300 8 8 2.8484 0.5294 2.0861 9 7 3.7974 2.4058 1.3786 10 6 4.5779 2.5305 2.6121 11 6 5.4777 3.7648 2.5237 12 1 4.9631 4.6354 2.1172 13 6 6.2522 4.0566 3.8198 14 6 7.4532 4.4142 2.9286 15 1 7.4808 5.4631 2.6332 16 7 8.7390 3.9357 3.4540 17 6 9.8504 4.7542 2.9515 18 6 11.1499 4.2341 3.5101 19 8 11.1500 3.2761 4.2539 20 7 12.3119 4.8334 3.1830 21 6 13.4935 4.3638 3.6956 22 1 13.4937 3.5108 4.3580 23 6 14.6910 4.9852 3.3629 24 7 14.6908 6.0235 2.5573 25 14 16.3009 4.3458 4.0620 26 1 16.8656 3.3213 3.1472 27 1 17.2617 5.4696 4.2002 28 1 16.0552 3.7379 5.3945 29 6 6.8395 3.4886 1.8650 30 1 -0.5400 -0.9302 0.0972 31 1 -0.5399 0.9302 -0.0973 32 1 1.8500 -0.9353 -0.0004 33 1 3.6508 0.5580 -1.2504 34 1 2.3153 1.3291 -2.1394 35 1 3.4878 2.3303 -1.2495 36 1 0.5051 2.4643 -0.9317 37 1 0.3833 2.3591 0.8409 38 1 2.4165 3.7813 1.0502 39 1 2.4950 3.9116 -0.7233 40 1 1.1200 4.6157 0.1608 41 1 3.9044 3.0583 0.6689 42 1 5.1939 1.6410 2.7437 43 1 3.9020 2.6332 3.4610 44 1 6.4152 3.1745 4.4390 45 1 5.8586 4.9032 4.3825 46 1 8.7322 3.9152 4.4628 47 1 9.7092 5.7893 3.2628 48 1 9.8766 4.7026 1.8630 49 1 12.3118 5.5999 2.5883 50 1 15.5267 6.4575 2.3254 51 1 6.9201 3.8765 0.8496 52 1 7.1631 2.4512 1.9499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691111662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:20 Heat of formation + Delta-G solvation = -56.478842 kcal Electronic energy + Delta-G solvation = -28710.098414 eV Core-core repulsion = 24709.717190 eV Total energy + Delta-G solvation = -4000.381224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.61691 -40.45490 -39.76681 -37.65669 -36.31638 -35.89063 -34.55438 -33.24759 -32.63059 -30.65010 -29.24855 -27.79796 -26.61507 -26.01427 -25.63548 -23.68457 -22.50456 -21.89264 -21.18599 -20.47664 -19.90249 -19.52516 -17.86574 -17.53146 -17.29115 -16.86873 -16.73478 -16.55900 -16.30142 -16.01189 -15.80422 -15.62688 -15.34244 -15.00195 -14.89734 -14.47673 -14.27380 -13.97677 -13.59097 -13.50191 -13.34652 -13.30888 -13.28906 -13.00212 -12.98018 -12.77408 -12.64833 -12.47381 -12.42382 -12.18798 -12.12727 -11.80697 -11.68611 -11.57721 -11.51353 -11.42501 -11.13397 -10.77646 -10.33168 -10.26101 -10.02007 -9.96034 -9.28029 -8.47310 -5.96087 1.28533 1.37611 1.41469 1.54106 1.61958 2.05026 2.28573 2.31145 2.98081 3.20007 3.47932 3.55521 3.62634 3.68997 3.76703 3.91122 3.94281 4.00462 4.09885 4.26426 4.36843 4.42616 4.43552 4.46295 4.49967 4.52315 4.60497 4.68634 4.74058 4.80947 4.86390 4.91066 4.92630 4.98056 5.07796 5.11726 5.13249 5.16072 5.28351 5.31089 5.38917 5.40783 5.43194 5.54844 5.69165 5.81474 5.94386 6.21111 6.44424 6.54060 6.60076 7.12225 7.24515 7.55858 8.11605 8.70002 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026732 B = 0.001584 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.167120 B =17674.875207 C =17742.884834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 C -0.048 4.048 4 C -0.140 4.140 5 C -0.109 4.109 6 C -0.183 4.183 7 C 0.520 3.480 8 O -0.587 6.587 9 N -0.712 5.712 10 C 0.130 3.870 11 C -0.102 4.102 12 H 0.125 0.875 13 C -0.129 4.129 14 C 0.053 3.947 15 H 0.091 0.909 16 N -0.675 5.675 17 C 0.066 3.934 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.274 1.274 29 C -0.122 4.122 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.417 0.583 42 H 0.046 0.954 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.343 0.657 47 H 0.068 0.932 48 H 0.102 0.898 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.079 0.921 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.857 0.988 -10.588 31.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.167 4.167 3 C -0.052 4.052 4 C -0.197 4.197 5 C -0.147 4.147 6 C -0.240 4.240 7 C 0.307 3.693 8 O -0.467 6.467 9 N -0.367 5.367 10 C 0.007 3.993 11 C -0.121 4.121 12 H 0.143 0.857 13 C -0.167 4.167 14 C -0.056 4.056 15 H 0.109 0.891 16 N -0.307 5.307 17 C -0.066 4.066 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.161 4.161 30 H 0.123 0.877 31 H 0.137 0.863 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.258 0.742 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.163 0.837 47 H 0.086 0.914 48 H 0.120 0.880 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.098 0.902 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -29.653 -0.576 -10.031 31.309 hybrid contribution 1.160 0.667 0.522 1.437 sum -28.493 0.092 -9.509 30.038 Atomic orbital electron populations 1.24138 0.95446 1.03350 0.99160 1.22551 0.96352 0.96595 1.01153 1.19961 0.95786 0.96031 0.93373 1.21927 0.99260 1.03000 0.95519 1.21641 0.96896 0.92532 1.03631 1.22374 1.01785 0.96591 1.03268 1.20984 0.80042 0.80302 0.87940 1.90687 1.69558 1.40746 1.45723 1.46384 1.41069 1.28939 1.20282 1.21290 0.93443 0.97722 0.86885 1.22548 0.93915 0.97685 0.97904 0.85723 1.23161 0.94842 1.02361 0.96356 1.23199 0.86704 0.98049 0.97681 0.89132 1.60246 1.01689 1.54020 1.14751 1.21585 0.88257 0.95594 1.01164 1.20987 0.86327 0.85509 0.84876 1.90491 1.87764 1.31132 1.41853 1.41934 1.05254 1.30049 1.43765 1.19667 0.84806 1.14408 1.27708 0.90485 1.26023 1.02279 0.95996 0.96844 1.69667 1.29500 1.21410 1.35403 0.84934 0.76980 0.77996 0.78448 1.19707 1.19373 1.19889 1.23153 0.94373 0.99948 0.98584 0.87717 0.86326 0.88657 0.93048 0.89583 0.90053 0.88586 0.92035 0.91610 0.90412 0.91045 0.74246 0.93510 0.91871 0.90420 0.89414 0.83711 0.91384 0.88030 0.76921 0.91265 0.90242 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 13.66 67.78 0.93 -1.47 16 2 C -0.15 -2.44 8.01 25.64 0.21 -2.24 16 3 C -0.05 -0.66 0.72 -53.67 -0.04 -0.70 16 4 C -0.14 -1.35 8.05 71.98 0.58 -0.77 16 5 C -0.11 -0.98 3.65 30.59 0.11 -0.86 16 6 C -0.18 -1.12 8.28 71.98 0.60 -0.52 16 7 C 0.52 10.57 6.24 87.66 0.55 11.12 16 8 O -0.59 -17.92 16.06 -3.05 -0.05 -17.96 16 9 N -0.71 -10.67 3.75 -463.08 -1.74 -12.41 16 10 C 0.13 2.31 5.51 86.38 0.48 2.78 16 11 C -0.10 -1.39 3.75 -10.27 -0.04 -1.43 16 12 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 13 C -0.13 -2.20 7.21 31.12 0.22 -1.97 16 14 C 0.05 1.10 4.14 45.44 0.19 1.29 16 15 H 0.09 1.59 7.87 -2.39 -0.02 1.57 16 16 N -0.67 -20.88 6.18 -492.85 -3.05 -23.93 16 17 C 0.07 2.24 6.01 85.56 0.51 2.75 16 18 C 0.44 20.90 7.82 87.66 0.69 21.59 16 19 O -0.63 -35.35 15.78 -3.06 -0.05 -35.40 16 20 N -0.57 -29.56 5.29 -306.99 -1.62 -31.19 16 21 C -0.34 -19.30 9.68 84.04 0.81 -18.49 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 24 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 25 Si 0.99 43.15 29.55 68.60 2.03 45.17 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 C -0.12 -2.28 7.43 31.12 0.23 -2.05 16 30 H 0.10 1.22 8.06 -2.91 -0.02 1.19 16 31 H 0.12 1.11 5.73 -2.91 -0.02 1.10 16 32 H 0.10 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.08 0.49 5.65 -2.38 -0.01 0.47 16 36 H 0.10 0.53 7.71 -2.39 -0.02 0.51 16 37 H 0.06 0.69 7.26 -2.39 -0.02 0.67 16 38 H 0.07 0.53 5.09 -2.39 -0.01 0.52 16 39 H 0.08 0.24 6.50 -2.39 -0.02 0.22 16 40 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.42 3.79 5.11 -92.71 -0.47 3.31 16 42 H 0.05 1.09 7.84 -2.39 -0.02 1.07 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.60 8.10 -2.39 -0.02 1.59 16 45 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.34 11.33 8.25 -89.69 -0.74 10.59 16 47 H 0.07 1.97 8.13 -2.38 -0.02 1.95 16 48 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 49 H 0.40 19.30 7.90 -92.70 -0.73 18.56 16 50 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 51 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.07 1.64 7.90 -2.38 -0.02 1.62 16 Total: -1.00 -75.82 412.41 1.29 -74.53 By element: Atomic # 1 Polarization: 42.50 SS G_CDS: -1.01 Total: 41.49 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 6.49 Total: 8.88 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -6.12 Total: -116.71 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -0.10 Total: -53.36 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -75.82 1.29 -74.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691111662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.048 kcal (2) G-P(sol) polarization free energy of solvation -75.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds