Wall clock time and date at job start Tue Mar 31 2020 20:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46937 * 2 1 4 4 H 1.09004 * 109.47151 * 55.00402 * 3 2 1 5 5 C 1.52995 * 109.47297 * 294.99485 * 3 2 1 6 6 C 1.52999 * 109.46731 * 174.99625 * 3 2 1 7 7 H 1.08996 * 109.47303 * 65.42019 * 6 3 2 8 8 N 1.46494 * 109.47710 * 305.41885 * 6 3 2 9 9 C 1.34784 * 119.99767 * 300.00436 * 8 6 3 10 10 C 1.50703 * 119.99605 * 179.97438 * 9 8 6 11 11 O 1.21273 * 119.99987 * 359.97438 * 9 8 6 12 12 C 1.50703 * 109.46993 * 185.41770 * 6 3 2 13 13 O 1.21287 * 120.00150 * 88.69938 * 12 6 3 14 14 N 1.34774 * 120.00363 * 268.69611 * 12 6 3 15 15 C 1.47625 * 120.90593 * 184.12871 * 14 12 6 16 16 C 1.53887 * 107.50240 * 132.48959 * 15 14 12 17 17 H 1.08995 * 112.09061 * 182.65998 * 16 15 14 18 18 C 1.54540 * 108.37182 * 307.00614 * 16 15 14 19 19 C 1.54281 * 104.85178 * 89.29710 * 18 16 15 20 20 C 1.54967 * 104.80314 * 359.81443 * 19 18 16 21 21 H 1.09006 * 112.25328 * 146.60746 * 20 19 18 22 22 C 1.47164 * 120.70678 * 4.80839 * 14 12 6 23 23 N 1.48298 * 104.15395 * 24.99279 * 20 19 18 24 24 C 1.36942 * 128.08054 * 139.03997 * 23 20 19 25 25 H 1.07997 * 120.00492 * 196.14282 * 24 23 20 26 26 C 1.38816 * 119.99638 * 16.14563 * 24 23 20 27 27 N 1.31622 * 119.99772 * 9.82331 * 26 24 23 28 28 Si 1.86796 * 119.99754 * 189.82265 * 26 24 23 29 29 H 1.48507 * 109.46743 * 179.97438 * 28 26 24 30 30 H 1.48492 * 109.47359 * 299.99931 * 28 26 24 31 31 H 1.48501 * 109.47062 * 60.00301 * 28 26 24 32 32 H 1.08992 * 109.47223 * 300.00000 * 1 2 3 33 33 H 1.09010 * 109.47007 * 59.99881 * 1 2 3 34 34 H 1.08993 * 109.47038 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.46863 * 240.00099 * 2 1 3 36 36 H 1.08996 * 109.47009 * 120.00124 * 2 1 3 37 37 H 1.08993 * 109.47627 * 299.98320 * 5 3 2 38 38 H 1.09009 * 109.46923 * 59.98484 * 5 3 2 39 39 H 1.09005 * 109.46727 * 179.97438 * 5 3 2 40 40 H 0.97006 * 120.00298 * 119.99626 * 8 6 3 41 41 H 1.08994 * 109.47218 * 90.00077 * 10 9 8 42 42 H 1.09004 * 109.46715 * 209.99755 * 10 9 8 43 43 H 1.09002 * 109.47233 * 329.99162 * 10 9 8 44 44 H 1.08997 * 109.38187 * 13.37142 * 15 14 12 45 45 H 1.08997 * 110.62873 * 252.31748 * 15 14 12 46 46 H 1.08998 * 110.36359 * 208.14290 * 18 16 15 47 47 H 1.09006 * 110.36232 * 330.45938 * 18 16 15 48 48 H 1.09000 * 110.36166 * 118.84300 * 19 18 16 49 49 H 1.08995 * 110.36581 * 241.05190 * 19 18 16 50 50 H 1.09002 * 109.75206 * 107.61391 * 22 14 12 51 51 H 1.08999 * 109.79568 * 346.90050 * 22 14 12 52 52 H 0.97005 * 119.99535 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4443 0.1258 7 1 4.0032 0.9903 -0.7628 8 7 3.9580 0.6775 1.3105 9 6 3.5301 1.0565 2.5311 10 6 3.9343 0.2673 3.7497 11 8 2.8200 2.0325 2.6487 12 6 4.0561 2.8627 0.2596 13 8 4.1453 3.3727 1.3565 14 7 4.3965 3.5645 -0.8394 15 6 4.9651 4.9222 -0.7261 16 6 6.2029 4.9831 -1.6384 17 1 6.7111 5.9453 -1.5760 18 6 7.1354 3.8060 -1.2734 19 6 6.6674 2.6389 -2.1674 20 6 5.4884 3.2181 -2.9896 21 1 5.4344 2.7909 -3.9910 22 6 4.1958 3.0000 -2.1836 23 7 5.7477 4.6780 -3.0165 24 6 5.5966 5.5435 -4.0670 25 1 6.0599 6.5185 -4.0344 26 6 4.8477 5.1675 -5.1737 27 7 4.1263 4.0672 -5.1372 28 14 4.8638 6.2232 -6.7147 29 1 3.9894 5.6079 -7.7453 30 1 4.3641 7.5829 -6.3885 31 1 6.2513 6.3174 -7.2356 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 2.0702 1.5878 -2.1491 38 1 0.5490 2.1249 -1.3971 39 1 1.9983 3.1544 -1.3071 40 1 4.5263 -0.1031 1.2165 41 1 4.8641 0.6697 4.1513 42 1 3.1514 0.3387 4.5048 43 1 4.0793 -0.7774 3.4745 44 1 5.2595 5.1060 0.3071 45 1 4.2380 5.6705 -1.0413 46 1 8.1719 4.0608 -1.4940 47 1 7.0235 3.5459 -0.2207 48 1 7.4739 2.3199 -2.8276 49 1 6.3273 1.8043 -1.5544 50 1 3.3653 3.5062 -2.6755 51 1 3.9844 1.9334 -2.1082 52 1 3.6032 3.8043 -5.9107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691839529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:21 Heat of formation + Delta-G solvation = -32.513492 kcal Electronic energy + Delta-G solvation = -32886.192341 eV Core-core repulsion = 28886.850332 eV Total energy + Delta-G solvation = -3999.342009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.68762 -39.22015 -37.46279 -36.35851 -33.76626 -33.52750 -32.46135 -31.02777 -30.23869 -29.33369 -29.17093 -26.92325 -25.52428 -24.43486 -23.59563 -23.24854 -21.04100 -20.23441 -19.71263 -19.15963 -18.29443 -17.52495 -16.72018 -16.12248 -15.87533 -15.40972 -15.17284 -14.95245 -14.57324 -14.31880 -13.96503 -13.76138 -13.42469 -13.24260 -13.09798 -12.93859 -12.76618 -12.67408 -12.37598 -12.26286 -11.96623 -11.84393 -11.77639 -11.68075 -11.62416 -11.39965 -11.07765 -10.93048 -10.78470 -10.66670 -10.56693 -10.52428 -10.36928 -10.08883 -9.86081 -9.73020 -9.61570 -9.53097 -9.25108 -8.83281 -8.42222 -7.95696 -6.82816 -5.88113 -3.21619 2.87971 3.13809 3.34827 3.39256 3.40191 3.41612 3.78678 4.40352 4.76826 4.89182 4.94519 5.02387 5.12992 5.15112 5.28731 5.29279 5.31232 5.39751 5.54867 5.64694 5.67913 5.71977 5.72559 5.78176 5.80250 5.80353 5.92895 6.01112 6.04512 6.09891 6.13631 6.15915 6.23726 6.30934 6.42569 6.47349 6.51968 6.53343 6.61729 6.64798 6.68572 6.73854 6.87882 7.02219 7.26274 7.46184 7.64439 7.66160 8.10511 8.19422 8.52209 8.87998 9.03573 9.65431 10.43188 11.25750 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.004111 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.925362 B = 6808.579541 C = 7851.504516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.098 4.098 4 H 0.094 0.906 5 C -0.156 4.156 6 C 0.137 3.863 7 H 0.105 0.895 8 N -0.724 5.724 9 C 0.508 3.492 10 C -0.170 4.170 11 O -0.503 6.503 12 C 0.498 3.502 13 O -0.531 6.531 14 N -0.594 5.594 15 C 0.106 3.894 16 C 0.133 3.867 17 H 0.075 0.925 18 C -0.121 4.121 19 C -0.134 4.134 20 C 0.167 3.833 21 H 0.116 0.884 22 C 0.102 3.898 23 N -0.584 5.584 24 C -0.225 4.225 25 H 0.075 0.925 26 C -0.001 4.001 27 N -0.915 5.915 28 Si 0.911 3.089 29 H -0.290 1.290 30 H -0.285 1.285 31 H -0.286 1.286 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.053 0.947 49 H 0.046 0.954 50 H 0.088 0.912 51 H 0.059 0.941 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 -12.122 9.980 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.118 4.118 4 H 0.112 0.888 5 C -0.214 4.214 6 C 0.028 3.972 7 H 0.122 0.878 8 N -0.378 5.378 9 C 0.294 3.706 10 C -0.230 4.230 11 O -0.376 6.376 12 C 0.283 3.717 13 O -0.407 6.407 14 N -0.327 5.327 15 C -0.018 4.018 16 C 0.025 3.975 17 H 0.093 0.907 18 C -0.160 4.160 19 C -0.174 4.174 20 C 0.059 3.941 21 H 0.133 0.867 22 C -0.022 4.022 23 N -0.305 5.305 24 C -0.353 4.353 25 H 0.093 0.907 26 C -0.198 4.198 27 N -0.561 5.561 28 Si 0.742 3.258 29 H -0.216 1.216 30 H -0.211 1.211 31 H -0.212 1.212 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.233 0.767 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.106 0.894 51 H 0.078 0.922 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.284 -11.063 10.410 15.245 hybrid contribution 0.271 0.131 -0.983 1.029 sum -1.013 -10.931 9.427 14.470 Atomic orbital electron populations 1.21793 0.95880 1.01116 1.02088 1.21483 0.95924 0.95881 1.01586 1.21461 0.92581 0.97285 1.00476 0.88799 1.22181 1.01571 1.01552 0.96072 1.21023 0.96555 0.91085 0.88507 0.87753 1.45780 1.54201 1.31730 1.06069 1.20588 0.80657 0.84978 0.84374 1.21856 1.04171 1.00221 0.96713 1.90747 1.35721 1.25472 1.85656 1.20649 0.78444 0.88058 0.84509 1.90713 1.53396 1.70785 1.25839 1.48336 1.61323 1.16684 1.06394 1.22357 0.96774 0.82935 0.99766 1.21982 0.92365 0.96579 0.86582 0.90675 1.22428 0.98676 0.96696 0.98245 1.22696 0.99835 0.96710 0.98110 1.21950 0.89004 0.85340 0.97786 0.86671 1.22832 1.01953 0.96263 0.81138 1.45141 1.76920 1.03317 1.05098 1.18964 1.25457 0.97055 0.93845 0.90724 1.24803 0.97544 0.98290 0.99205 1.69816 1.31459 1.24945 1.29857 0.86220 0.77350 0.79543 0.82734 1.21608 1.21135 1.21233 0.92916 0.92297 0.93114 0.92070 0.92229 0.91795 0.92350 0.91518 0.76689 0.89285 0.89361 0.90729 0.91126 0.92044 0.92824 0.92888 0.92813 0.93497 0.89363 0.92243 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.67 37.16 0.36 -1.25 16 2 C -0.11 -1.24 5.27 -26.73 -0.14 -1.38 16 3 C -0.10 -1.39 1.65 -90.62 -0.15 -1.54 16 4 H 0.09 1.64 6.34 -51.93 -0.33 1.31 16 5 C -0.16 -2.29 7.21 37.15 0.27 -2.03 16 6 C 0.14 1.97 2.25 -69.08 -0.16 1.81 16 7 H 0.10 1.35 6.01 -51.93 -0.31 1.04 16 8 N -0.72 -8.74 4.22 -54.93 -0.23 -8.97 16 9 C 0.51 7.11 6.62 -10.98 -0.07 7.04 16 10 C -0.17 -1.55 10.30 36.01 0.37 -1.18 16 11 O -0.50 -9.63 12.71 -18.63 -0.24 -9.87 16 12 C 0.50 9.24 6.14 -10.99 -0.07 9.18 16 13 O -0.53 -11.70 12.94 -18.64 -0.24 -11.94 16 14 N -0.59 -11.23 1.91 -171.16 -0.33 -11.55 16 15 C 0.11 2.13 5.97 -2.96 -0.02 2.11 16 16 C 0.13 2.67 4.27 -65.66 -0.28 2.39 16 17 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 18 C -0.12 -2.17 6.18 -25.25 -0.16 -2.33 16 19 C -0.13 -2.40 6.21 -25.02 -0.16 -2.56 16 20 C 0.17 3.49 3.12 -65.44 -0.20 3.29 16 21 H 0.12 2.73 6.47 -51.93 -0.34 2.39 16 22 C 0.10 1.93 3.54 -3.22 -0.01 1.92 16 23 N -0.58 -13.52 2.80 -152.35 -0.43 -13.94 16 24 C -0.23 -5.79 10.36 -15.06 -0.16 -5.94 16 25 H 0.07 1.90 7.85 -52.49 -0.41 1.48 16 26 C 0.00 -0.03 5.41 -17.43 -0.09 -0.13 16 27 N -0.91 -23.84 10.39 55.49 0.58 -23.26 16 28 Si 0.91 20.84 29.56 -169.99 -5.03 15.81 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 31 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.63 6.57 -51.92 -0.34 0.29 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.64 7.10 -51.93 -0.37 0.27 16 37 H 0.06 0.90 6.82 -51.93 -0.35 0.54 16 38 H 0.06 0.79 6.56 -51.92 -0.34 0.45 16 39 H 0.07 1.17 5.49 -51.93 -0.28 0.88 16 40 H 0.40 3.33 8.83 -40.82 -0.36 2.97 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 1.41 7.15 -51.93 -0.37 1.04 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.05 0.93 7.86 -51.93 -0.41 0.53 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.05 0.75 7.85 -51.93 -0.41 0.34 16 50 H 0.09 1.97 6.72 -51.93 -0.35 1.62 16 51 H 0.06 0.98 4.13 -51.93 -0.21 0.76 16 52 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -31.56 381.51 -9.38 -40.93 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.55 Total: 7.63 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -0.66 Total: 9.41 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.41 Total: -57.73 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.48 Total: -21.81 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.56 -9.38 -40.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691839529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.420 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds