Wall clock time and date at job start Tue Mar 31 2020 20:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46937 * 2 1 4 4 H 1.09004 * 109.47151 * 55.00402 * 3 2 1 5 5 C 1.52995 * 109.47297 * 294.99485 * 3 2 1 6 6 C 1.52999 * 109.46731 * 174.99625 * 3 2 1 7 7 H 1.08996 * 109.47303 * 65.42019 * 6 3 2 8 8 N 1.46494 * 109.47710 * 305.41885 * 6 3 2 9 9 C 1.34784 * 119.99767 * 300.00436 * 8 6 3 10 10 C 1.50703 * 119.99605 * 179.97438 * 9 8 6 11 11 O 1.21273 * 119.99987 * 359.97438 * 9 8 6 12 12 C 1.50703 * 109.46993 * 185.41770 * 6 3 2 13 13 O 1.21287 * 120.00150 * 88.69938 * 12 6 3 14 14 N 1.34774 * 120.00363 * 268.69611 * 12 6 3 15 15 C 1.47625 * 120.90593 * 184.12871 * 14 12 6 16 16 C 1.53887 * 107.50240 * 132.48959 * 15 14 12 17 17 H 1.08995 * 112.09061 * 182.65998 * 16 15 14 18 18 C 1.54540 * 108.37182 * 307.00614 * 16 15 14 19 19 C 1.54281 * 104.85178 * 89.29710 * 18 16 15 20 20 C 1.54967 * 104.80314 * 359.81443 * 19 18 16 21 21 H 1.09006 * 112.25328 * 146.60746 * 20 19 18 22 22 C 1.47164 * 120.70678 * 4.80839 * 14 12 6 23 23 N 1.48298 * 104.15395 * 24.99279 * 20 19 18 24 24 C 1.36942 * 128.08054 * 139.03997 * 23 20 19 25 25 H 1.07997 * 120.00492 * 196.14282 * 24 23 20 26 26 C 1.38816 * 119.99638 * 16.14563 * 24 23 20 27 27 N 1.31622 * 119.99772 * 9.82331 * 26 24 23 28 28 Si 1.86796 * 119.99754 * 189.82265 * 26 24 23 29 29 H 1.48507 * 109.46743 * 179.97438 * 28 26 24 30 30 H 1.48492 * 109.47359 * 299.99931 * 28 26 24 31 31 H 1.48501 * 109.47062 * 60.00301 * 28 26 24 32 32 H 1.08992 * 109.47223 * 300.00000 * 1 2 3 33 33 H 1.09010 * 109.47007 * 59.99881 * 1 2 3 34 34 H 1.08993 * 109.47038 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.46863 * 240.00099 * 2 1 3 36 36 H 1.08996 * 109.47009 * 120.00124 * 2 1 3 37 37 H 1.08993 * 109.47627 * 299.98320 * 5 3 2 38 38 H 1.09009 * 109.46923 * 59.98484 * 5 3 2 39 39 H 1.09005 * 109.46727 * 179.97438 * 5 3 2 40 40 H 0.97006 * 120.00298 * 119.99626 * 8 6 3 41 41 H 1.08994 * 109.47218 * 90.00077 * 10 9 8 42 42 H 1.09004 * 109.46715 * 209.99755 * 10 9 8 43 43 H 1.09002 * 109.47233 * 329.99162 * 10 9 8 44 44 H 1.08997 * 109.38187 * 13.37142 * 15 14 12 45 45 H 1.08997 * 110.62873 * 252.31748 * 15 14 12 46 46 H 1.08998 * 110.36359 * 208.14290 * 18 16 15 47 47 H 1.09006 * 110.36232 * 330.45938 * 18 16 15 48 48 H 1.09000 * 110.36166 * 118.84300 * 19 18 16 49 49 H 1.08995 * 110.36581 * 241.05190 * 19 18 16 50 50 H 1.09002 * 109.75206 * 107.61391 * 22 14 12 51 51 H 1.08999 * 109.79568 * 346.90050 * 22 14 12 52 52 H 0.97005 * 119.99535 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4443 0.1258 7 1 4.0032 0.9903 -0.7628 8 7 3.9580 0.6775 1.3105 9 6 3.5301 1.0565 2.5311 10 6 3.9343 0.2673 3.7497 11 8 2.8200 2.0325 2.6487 12 6 4.0561 2.8627 0.2596 13 8 4.1453 3.3727 1.3565 14 7 4.3965 3.5645 -0.8394 15 6 4.9651 4.9222 -0.7261 16 6 6.2029 4.9831 -1.6384 17 1 6.7111 5.9453 -1.5760 18 6 7.1354 3.8060 -1.2734 19 6 6.6674 2.6389 -2.1674 20 6 5.4884 3.2181 -2.9896 21 1 5.4344 2.7909 -3.9910 22 6 4.1958 3.0000 -2.1836 23 7 5.7477 4.6780 -3.0165 24 6 5.5966 5.5435 -4.0670 25 1 6.0599 6.5185 -4.0344 26 6 4.8477 5.1675 -5.1737 27 7 4.1263 4.0672 -5.1372 28 14 4.8638 6.2232 -6.7147 29 1 3.9894 5.6079 -7.7453 30 1 4.3641 7.5829 -6.3885 31 1 6.2513 6.3174 -7.2356 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 2.0702 1.5878 -2.1491 38 1 0.5490 2.1249 -1.3971 39 1 1.9983 3.1544 -1.3071 40 1 4.5263 -0.1031 1.2165 41 1 4.8641 0.6697 4.1513 42 1 3.1514 0.3387 4.5048 43 1 4.0793 -0.7774 3.4745 44 1 5.2595 5.1060 0.3071 45 1 4.2380 5.6705 -1.0413 46 1 8.1719 4.0608 -1.4940 47 1 7.0235 3.5459 -0.2207 48 1 7.4739 2.3199 -2.8276 49 1 6.3273 1.8043 -1.5544 50 1 3.3653 3.5062 -2.6755 51 1 3.9844 1.9334 -2.1082 52 1 3.6032 3.8043 -5.9107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691839529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:20 Heat of formation + Delta-G solvation = -50.716551 kcal Electronic energy + Delta-G solvation = -32886.981685 eV Core-core repulsion = 28886.850332 eV Total energy + Delta-G solvation = -4000.131353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.05800 -40.59109 -38.91222 -37.57979 -35.31391 -34.75760 -34.20392 -32.43721 -31.41804 -31.01652 -30.20227 -28.33899 -26.92429 -25.81080 -25.29315 -24.54911 -22.16791 -21.51810 -21.28747 -20.63153 -19.81873 -18.78613 -18.17492 -17.47574 -17.19056 -16.87787 -16.70480 -16.27747 -16.07592 -15.50010 -15.41296 -15.15830 -14.72216 -14.61561 -14.43773 -14.34157 -14.28664 -13.72038 -13.53869 -13.47799 -13.30139 -13.24296 -13.11722 -12.95772 -12.86180 -12.72282 -12.69815 -12.55738 -12.40698 -12.01270 -11.90407 -11.79159 -11.68301 -11.51701 -11.43679 -11.41268 -11.06559 -11.05646 -10.67269 -10.39938 -9.78301 -9.59944 -8.64278 -7.83790 -5.17281 1.51161 1.51918 1.57538 1.66402 1.88598 2.14308 2.51013 2.54228 3.35630 3.47991 3.56631 3.75495 3.87761 4.05038 4.10810 4.12582 4.20284 4.23991 4.24830 4.37571 4.47577 4.50573 4.58049 4.60166 4.63292 4.68984 4.72347 4.73886 4.77405 4.82351 5.00518 5.03786 5.06737 5.08617 5.10867 5.13025 5.18043 5.20428 5.21697 5.34893 5.38069 5.45069 5.50254 5.56056 5.57578 5.66510 5.88360 6.26603 6.66727 6.75111 7.11753 7.33289 7.58721 7.74442 8.55030 9.27908 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.004111 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.925362 B = 6808.579541 C = 7851.504516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 C -0.090 4.090 4 H 0.057 0.943 5 C -0.150 4.150 6 C 0.142 3.858 7 H 0.129 0.871 8 N -0.709 5.709 9 C 0.498 3.502 10 C -0.160 4.160 11 O -0.563 6.563 12 C 0.495 3.505 13 O -0.566 6.566 14 N -0.592 5.592 15 C 0.111 3.889 16 C 0.130 3.870 17 H 0.075 0.925 18 C -0.110 4.110 19 C -0.124 4.124 20 C 0.162 3.838 21 H 0.088 0.912 22 C 0.120 3.880 23 N -0.603 5.603 24 C -0.240 4.240 25 H 0.069 0.931 26 C -0.043 4.043 27 N -0.927 5.927 28 Si 0.966 3.034 29 H -0.293 1.293 30 H -0.287 1.287 31 H -0.283 1.283 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.030 0.970 40 H 0.422 0.578 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.052 0.948 51 H 0.090 0.910 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 -15.151 10.403 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 C -0.110 4.110 4 H 0.076 0.924 5 C -0.208 4.208 6 C 0.033 3.967 7 H 0.146 0.854 8 N -0.364 5.364 9 C 0.287 3.713 10 C -0.220 4.220 11 O -0.440 6.440 12 C 0.282 3.718 13 O -0.444 6.444 14 N -0.325 5.325 15 C -0.014 4.014 16 C 0.022 3.978 17 H 0.094 0.906 18 C -0.149 4.149 19 C -0.163 4.163 20 C 0.054 3.946 21 H 0.106 0.894 22 C -0.004 4.004 23 N -0.325 5.325 24 C -0.369 4.369 25 H 0.087 0.913 26 C -0.239 4.239 27 N -0.574 5.574 28 Si 0.796 3.204 29 H -0.219 1.219 30 H -0.214 1.214 31 H -0.209 1.209 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.260 0.740 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.132 0.868 44 H 0.088 0.912 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.070 0.930 51 H 0.108 0.892 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.263 -14.147 10.840 17.825 hybrid contribution -0.072 1.142 -1.071 1.567 sum -0.335 -13.005 9.769 16.269 Atomic orbital electron populations 1.21789 0.95582 1.02208 1.01267 1.21456 0.96163 0.93497 1.03009 1.21348 0.92263 0.98995 0.98394 0.92404 1.22108 1.02131 0.99601 0.96944 1.20967 0.96676 0.88687 0.90405 0.85396 1.45690 1.53957 1.31845 1.04936 1.21522 0.79463 0.84472 0.85870 1.21852 1.04202 1.01683 0.94222 1.90739 1.38401 1.28255 1.86557 1.21446 0.77246 0.89584 0.83510 1.90703 1.54615 1.71984 1.27104 1.48349 1.61312 1.16189 1.06692 1.22161 0.96305 0.83389 0.99543 1.22108 0.92642 0.97860 0.85166 0.90644 1.22320 0.98570 0.95469 0.98507 1.22611 0.98583 0.97172 0.97930 1.21952 0.91048 0.84286 0.97276 0.89371 1.22536 0.99817 0.97423 0.80582 1.45319 1.77224 1.04215 1.05702 1.19169 1.25359 0.97449 0.94938 0.91315 1.25390 0.97731 0.99508 1.01255 1.69953 1.31765 1.25733 1.29904 0.85365 0.77092 0.78041 0.79947 1.21888 1.21378 1.20932 0.94301 0.92643 0.91021 0.90028 0.91233 0.90752 0.91586 0.95065 0.74008 0.88575 0.89388 0.86764 0.91172 0.94782 0.91621 0.92237 0.92125 0.90956 0.92992 0.89166 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.67 71.98 0.70 -2.22 16 2 C -0.10 -2.03 5.27 30.59 0.16 -1.87 16 3 C -0.09 -2.46 1.65 -10.80 -0.02 -2.48 16 4 H 0.06 2.06 6.34 -2.39 -0.02 2.04 16 5 C -0.15 -4.39 7.21 71.98 0.52 -3.87 16 6 C 0.14 3.80 2.25 44.25 0.10 3.90 16 7 H 0.13 2.82 6.01 -2.39 -0.01 2.81 16 8 N -0.71 -15.06 4.22 -446.10 -1.88 -16.94 16 9 C 0.50 13.09 6.62 87.66 0.58 13.67 16 10 C -0.16 -2.44 10.30 71.24 0.73 -1.70 16 11 O -0.56 -21.71 12.71 20.13 0.26 -21.46 16 12 C 0.49 18.18 6.14 87.66 0.54 18.72 16 13 O -0.57 -25.20 12.94 20.08 0.26 -24.94 16 14 N -0.59 -22.49 1.91 -813.80 -1.55 -24.04 16 15 C 0.11 4.58 5.97 86.46 0.52 5.10 16 16 C 0.13 5.23 4.27 45.47 0.19 5.42 16 17 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 18 C -0.11 -3.72 6.18 31.55 0.20 -3.52 16 19 C -0.12 -4.14 6.21 31.70 0.20 -3.94 16 20 C 0.16 6.69 3.12 45.62 0.14 6.84 16 21 H 0.09 4.18 6.47 -2.38 -0.02 4.16 16 22 C 0.12 4.54 3.54 86.55 0.31 4.85 16 23 N -0.60 -28.25 2.80 -635.93 -1.78 -30.03 16 24 C -0.24 -12.59 10.36 84.03 0.87 -11.72 16 25 H 0.07 3.58 7.85 -2.91 -0.02 3.55 16 26 C -0.04 -2.27 5.41 84.86 0.46 -1.81 16 27 N -0.93 -49.11 10.39 21.65 0.22 -48.88 16 28 Si 0.97 43.39 29.56 68.60 2.03 45.42 16 29 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 30 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 31 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 1.10 6.57 -2.38 -0.02 1.08 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.25 7.10 -2.39 -0.02 1.23 16 37 H 0.07 1.98 6.82 -2.39 -0.02 1.97 16 38 H 0.07 1.79 6.56 -2.38 -0.02 1.77 16 39 H 0.03 1.12 5.49 -2.38 -0.01 1.11 16 40 H 0.42 5.13 8.83 -92.70 -0.82 4.31 16 41 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 2.88 7.15 -2.39 -0.02 2.86 16 45 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.06 1.96 7.86 -2.38 -0.02 1.94 16 48 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.07 2.04 7.85 -2.39 -0.02 2.02 16 50 H 0.05 2.38 6.72 -2.39 -0.02 2.37 16 51 H 0.09 2.79 4.13 -2.39 -0.01 2.78 16 52 H 0.25 13.05 8.31 -92.70 -0.77 12.28 16 Total: -1.00 -72.33 381.51 3.86 -68.47 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.11 Total: 27.04 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: 6.19 Total: 25.35 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -4.99 Total: -119.90 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: 0.52 Total: -46.39 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -72.33 3.86 -68.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691839529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.756 kcal (2) G-P(sol) polarization free energy of solvation -72.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds