Wall clock time and date at job start Tue Mar 31 2020 20:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46768 * 2 1 4 4 H 1.09003 * 110.45963 * 56.73656 * 3 2 1 5 5 C 1.54385 * 110.41018 * 294.32723 * 3 2 1 6 6 H 1.08995 * 110.32070 * 336.36394 * 5 3 2 7 7 N 1.46500 * 110.32292 * 98.47166 * 5 3 2 8 8 C 1.34781 * 120.00053 * 203.57245 * 7 5 3 9 9 O 1.21281 * 119.99488 * 0.02562 * 8 7 5 10 10 C 1.50691 * 120.00277 * 180.02562 * 8 7 5 11 11 C 1.52996 * 109.47499 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47589 * 180.02562 * 11 10 8 13 13 C 1.52995 * 117.49827 * 243.62196 * 12 11 10 14 14 C 1.52991 * 59.99981 * 252.50807 * 13 12 11 15 15 C 1.54257 * 105.14772 * 217.41972 * 5 3 2 16 16 C 1.54375 * 105.06258 * 359.94710 * 15 5 3 17 17 N 1.48564 * 104.59506 * 23.85501 * 16 15 5 18 18 C 1.46901 * 110.99826 * 200.96067 * 17 16 15 19 19 C 1.50698 * 109.47132 * 284.03272 * 18 17 16 20 20 O 1.21298 * 120.00006 * 0.02562 * 19 18 17 21 21 N 1.34778 * 120.00021 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99739 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99884 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99876 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99940 * 359.97438 * 24 22 21 26 26 Si 1.86789 * 120.00008 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47206 * 60.00161 * 26 24 22 28 28 H 1.48504 * 109.47319 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47417 * 299.99890 * 26 24 22 30 30 H 1.09000 * 109.47099 * 305.27346 * 1 2 3 31 31 H 1.08990 * 109.47468 * 65.28332 * 1 2 3 32 32 H 1.09005 * 109.46717 * 185.28214 * 1 2 3 33 33 H 1.08991 * 109.47416 * 240.00103 * 2 1 3 34 34 H 1.08997 * 109.47606 * 119.99537 * 2 1 3 35 35 H 0.96999 * 119.99988 * 23.57709 * 7 5 3 36 36 H 1.09001 * 109.47186 * 59.99695 * 10 8 7 37 37 H 1.09004 * 109.47410 * 300.00596 * 10 8 7 38 38 H 1.09001 * 109.47360 * 59.99545 * 11 10 8 39 39 H 1.09004 * 109.46637 * 299.99699 * 11 10 8 40 40 H 1.09000 * 115.54619 * 29.32689 * 12 11 10 41 41 H 1.09002 * 117.50309 * 359.97438 * 13 12 11 42 42 H 1.09004 * 117.50381 * 145.01832 * 13 12 11 43 43 H 1.09008 * 117.50006 * 252.51418 * 14 13 12 44 44 H 1.08998 * 117.52082 * 107.48294 * 14 13 12 45 45 H 1.09000 * 110.32533 * 118.84459 * 15 5 3 46 46 H 1.09007 * 110.32258 * 240.95175 * 15 5 3 47 47 H 1.09005 * 110.41189 * 142.63076 * 16 15 5 48 48 H 1.09004 * 110.41490 * 265.07737 * 16 15 5 49 49 H 1.08999 * 109.47323 * 44.03816 * 18 17 16 50 50 H 1.09006 * 109.46745 * 164.03788 * 18 17 16 51 51 H 0.96996 * 120.00138 * 0.02562 * 21 19 18 52 52 H 0.96999 * 120.00107 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6388 1.9885 0.8539 5 6 1.6574 2.1489 -1.3185 6 1 1.4963 1.4150 -2.1081 7 7 0.4546 2.9634 -1.1289 8 6 -0.3219 3.2747 -2.1856 9 8 -0.0251 2.8801 -3.2934 10 6 -1.5589 4.1131 -1.9908 11 6 -2.2539 4.3177 -3.3384 12 6 -3.5094 5.1694 -3.1407 13 6 -4.8592 4.5217 -3.4557 14 6 -4.2845 5.5864 -4.3921 15 6 2.8644 3.0468 -1.6596 16 6 3.8761 2.8098 -0.5180 17 7 3.5267 1.4696 0.0196 18 6 4.0387 1.3008 1.3862 19 6 5.5242 1.0516 1.3388 20 8 6.0999 1.0183 0.2717 21 7 6.2130 0.8656 2.4823 22 6 7.5646 0.6394 2.4392 23 1 8.0772 0.6106 1.4890 24 6 8.2747 0.4471 3.6179 25 7 7.6509 0.4826 4.7740 26 14 10.1159 0.1381 3.5592 27 1 10.7917 1.2946 2.9179 28 1 10.6334 -0.0331 4.9406 29 1 10.3867 -1.0919 2.7727 30 1 -0.3633 0.5935 0.8390 31 1 -0.3634 0.4296 -0.9334 32 1 -0.3633 -1.0234 0.0946 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 0.2170 3.2788 -0.2429 36 1 -1.2799 5.0812 -1.5748 37 1 -2.2378 3.6054 -1.3056 38 1 -2.5329 3.3495 -3.7540 39 1 -1.5751 4.8254 -4.0238 40 1 -3.4715 5.8775 -2.3129 41 1 -4.8528 3.4889 -3.8042 42 1 -5.7098 4.8035 -2.8350 43 1 -4.7569 6.5688 -4.3875 44 1 -3.8997 5.2543 -5.3564 45 1 3.2968 2.7526 -2.6159 46 1 2.5615 4.0936 -1.6878 47 1 4.8946 2.8098 -0.9065 48 1 3.7629 3.5706 0.2544 49 1 3.8400 2.2042 1.9628 50 1 3.5428 0.4523 1.8577 51 1 5.7526 0.8918 3.3356 52 1 8.1465 0.3480 5.5969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691963883.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:21 Heat of formation + Delta-G solvation = -57.686802 kcal Electronic energy + Delta-G solvation = -29290.126346 eV Core-core repulsion = 25289.692741 eV Total energy + Delta-G solvation = -4000.433605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.42475 -39.08965 -37.94041 -37.54766 -34.52300 -33.81802 -33.33877 -32.63410 -31.31756 -30.74614 -27.63794 -26.70620 -25.18748 -24.10699 -22.89185 -22.73682 -21.47117 -20.76227 -20.42092 -19.93454 -19.12991 -17.87297 -17.13107 -16.77008 -16.02212 -16.01198 -15.73963 -15.13133 -14.90497 -14.68626 -14.53299 -14.31703 -14.11568 -13.76052 -13.66209 -13.44829 -13.24629 -13.07970 -12.63497 -12.42009 -12.15189 -12.04368 -11.94491 -11.73114 -11.65199 -11.57037 -11.43075 -11.35019 -11.28010 -11.07047 -11.00126 -10.71017 -10.66183 -10.51823 -10.43186 -10.27193 -10.19863 -9.93255 -9.47000 -9.15207 -8.53512 -8.02973 -7.93496 -6.40155 -3.80786 2.47903 2.92263 3.21183 3.26566 3.31191 3.40812 3.91956 3.99717 4.21989 4.29000 4.39504 4.45779 4.55028 4.60780 4.67654 4.84168 4.95475 4.98433 5.10224 5.10579 5.19094 5.23441 5.25809 5.26401 5.29939 5.33262 5.42006 5.46932 5.52086 5.59517 5.63369 5.71184 5.74822 5.76293 5.78347 5.87985 5.96955 5.98163 6.01513 6.12127 6.15290 6.23648 6.32272 6.40030 6.40791 7.09904 7.17071 7.32824 7.56483 8.06767 8.07804 8.63971 9.20117 9.56398 10.08849 10.77644 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.001824 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.788380 B =15345.013352 C =15639.187690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C 0.056 3.944 4 H 0.053 0.947 5 C 0.148 3.852 6 H 0.100 0.900 7 N -0.723 5.723 8 C 0.512 3.488 9 O -0.539 6.539 10 C -0.138 4.138 11 C -0.073 4.073 12 C -0.155 4.155 13 C -0.182 4.182 14 C -0.181 4.181 15 C -0.132 4.132 16 C 0.039 3.961 17 N -0.477 5.477 18 C 0.036 3.964 19 C 0.446 3.554 20 O -0.575 6.575 21 N -0.566 5.566 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.097 0.903 48 H 0.038 0.962 49 H 0.050 0.950 50 H 0.088 0.912 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.402 8.428 -8.492 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.053 4.053 4 H 0.071 0.929 5 C 0.043 3.957 6 H 0.118 0.882 7 N -0.375 5.375 8 C 0.298 3.702 9 O -0.415 6.415 10 C -0.178 4.178 11 C -0.111 4.111 12 C -0.173 4.173 13 C -0.219 4.219 14 C -0.218 4.218 15 C -0.171 4.171 16 C -0.089 4.089 17 N -0.200 5.200 18 C -0.096 4.096 19 C 0.231 3.769 20 O -0.458 6.458 21 N -0.204 5.204 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.545 5.545 26 Si 0.757 3.243 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.232 0.768 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.115 0.885 48 H 0.056 0.944 49 H 0.068 0.932 50 H 0.107 0.893 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.457 7.649 -10.135 26.673 hybrid contribution 0.221 0.714 1.806 1.955 sum -23.236 8.363 -8.329 26.061 Atomic orbital electron populations 1.21755 0.95775 1.01563 1.01518 1.21443 0.94890 0.95022 1.03413 1.22956 0.89882 0.96715 0.95730 0.92881 1.21720 0.83600 0.92588 0.97842 0.88156 1.46199 1.26338 1.54297 1.10650 1.20713 0.84511 0.80441 0.84505 1.90721 1.72839 1.53601 1.24351 1.21664 0.95120 1.00653 1.00353 1.20912 0.94493 0.99886 0.95828 1.22358 0.92545 1.02536 0.99866 1.23054 0.96790 0.98399 1.03641 1.22962 1.04262 0.99576 0.95013 1.22739 0.95187 0.99359 0.99854 1.23150 1.01038 0.88846 0.95853 1.65070 1.05573 1.29484 1.19912 1.22068 0.96522 1.01334 0.89702 1.19678 0.87654 0.84502 0.85052 1.90521 1.70229 1.55726 1.29333 1.41846 1.08601 1.62986 1.06916 1.19648 0.82926 1.45505 0.94695 0.87998 1.25240 1.00541 0.97496 0.94657 1.69603 1.37025 1.50218 0.97647 0.85925 0.82151 0.79139 0.77041 1.19965 1.21015 1.19903 0.93089 0.92758 0.92624 0.90750 0.91438 0.76793 0.88907 0.88828 0.90999 0.90772 0.87758 0.88722 0.88956 0.88886 0.88695 0.90303 0.91257 0.88457 0.94379 0.93208 0.89343 0.77585 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.56 37.16 0.36 -1.01 16 2 C -0.11 -1.27 5.56 -26.73 -0.15 -1.42 16 3 C 0.06 0.68 2.03 -65.98 -0.13 0.55 16 4 H 0.05 0.57 7.60 -51.93 -0.39 0.18 16 5 C 0.15 1.73 2.17 -66.55 -0.14 1.59 16 6 H 0.10 1.38 7.27 -51.93 -0.38 1.00 16 7 N -0.72 -6.44 4.65 -52.47 -0.24 -6.69 16 8 C 0.51 5.10 7.83 -10.99 -0.09 5.02 16 9 O -0.54 -7.67 15.66 5.56 0.09 -7.58 16 10 C -0.14 -0.89 5.66 -27.89 -0.16 -1.05 16 11 C -0.07 -0.55 4.78 -26.73 -0.13 -0.68 16 12 C -0.15 -0.95 5.74 -90.63 -0.52 -1.47 16 13 C -0.18 -1.06 10.18 -26.74 -0.27 -1.34 16 14 C -0.18 -1.09 10.25 -26.74 -0.27 -1.37 16 15 C -0.13 -1.72 6.79 -25.35 -0.17 -1.89 16 16 C 0.04 0.60 5.96 -2.18 -0.01 0.59 16 17 N -0.48 -7.72 4.64 -223.42 -1.04 -8.76 16 18 C 0.04 0.62 5.28 -4.98 -0.03 0.59 16 19 C 0.45 10.48 7.64 -10.99 -0.08 10.40 16 20 O -0.57 -15.58 14.91 5.54 0.08 -15.49 16 21 N -0.57 -14.30 5.29 -10.96 -0.06 -14.35 16 22 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 26 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.52 7.38 -51.93 -0.38 0.14 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.07 0.82 7.27 -51.93 -0.38 0.44 16 35 H 0.40 2.54 8.36 -40.82 -0.34 2.20 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.62 7.83 -51.93 -0.41 0.22 16 39 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.10 0.54 8.07 -51.93 -0.42 0.12 16 41 H 0.09 0.56 8.03 -51.93 -0.42 0.15 16 42 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.07 0.82 7.95 -51.93 -0.41 0.41 16 47 H 0.10 1.80 7.33 -51.93 -0.38 1.42 16 48 H 0.04 0.55 7.73 -51.93 -0.40 0.15 16 49 H 0.05 0.79 7.73 -51.93 -0.40 0.38 16 50 H 0.09 1.40 7.14 -51.93 -0.37 1.03 16 51 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 52 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 418.04 15.07 6.30 6.30 Total: -1.00 -32.81 418.04 -10.35 -43.16 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -9.14 Total: 10.54 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.05 Total: 0.55 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.61 Total: -53.57 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.17 Total: -23.07 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.81 -10.35 -43.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691963883.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.529 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds