Wall clock time and date at job start Tue Mar 31 2020 20:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46768 * 2 1 4 4 H 1.09003 * 110.45963 * 56.73656 * 3 2 1 5 5 C 1.54385 * 110.41018 * 294.32723 * 3 2 1 6 6 H 1.08995 * 110.32070 * 336.36394 * 5 3 2 7 7 N 1.46500 * 110.32292 * 98.47166 * 5 3 2 8 8 C 1.34781 * 120.00053 * 203.57245 * 7 5 3 9 9 O 1.21281 * 119.99488 * 0.02562 * 8 7 5 10 10 C 1.50691 * 120.00277 * 180.02562 * 8 7 5 11 11 C 1.52996 * 109.47499 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47589 * 180.02562 * 11 10 8 13 13 C 1.52995 * 117.49827 * 243.62196 * 12 11 10 14 14 C 1.52991 * 59.99981 * 252.50807 * 13 12 11 15 15 C 1.54257 * 105.14772 * 217.41972 * 5 3 2 16 16 C 1.54375 * 105.06258 * 359.94710 * 15 5 3 17 17 N 1.48564 * 104.59506 * 23.85501 * 16 15 5 18 18 C 1.46901 * 110.99826 * 200.96067 * 17 16 15 19 19 C 1.50698 * 109.47132 * 284.03272 * 18 17 16 20 20 O 1.21298 * 120.00006 * 0.02562 * 19 18 17 21 21 N 1.34778 * 120.00021 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99739 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99884 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99876 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99940 * 359.97438 * 24 22 21 26 26 Si 1.86789 * 120.00008 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47206 * 60.00161 * 26 24 22 28 28 H 1.48504 * 109.47319 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47417 * 299.99890 * 26 24 22 30 30 H 1.09000 * 109.47099 * 305.27346 * 1 2 3 31 31 H 1.08990 * 109.47468 * 65.28332 * 1 2 3 32 32 H 1.09005 * 109.46717 * 185.28214 * 1 2 3 33 33 H 1.08991 * 109.47416 * 240.00103 * 2 1 3 34 34 H 1.08997 * 109.47606 * 119.99537 * 2 1 3 35 35 H 0.96999 * 119.99988 * 23.57709 * 7 5 3 36 36 H 1.09001 * 109.47186 * 59.99695 * 10 8 7 37 37 H 1.09004 * 109.47410 * 300.00596 * 10 8 7 38 38 H 1.09001 * 109.47360 * 59.99545 * 11 10 8 39 39 H 1.09004 * 109.46637 * 299.99699 * 11 10 8 40 40 H 1.09000 * 115.54619 * 29.32689 * 12 11 10 41 41 H 1.09002 * 117.50309 * 359.97438 * 13 12 11 42 42 H 1.09004 * 117.50381 * 145.01832 * 13 12 11 43 43 H 1.09008 * 117.50006 * 252.51418 * 14 13 12 44 44 H 1.08998 * 117.52082 * 107.48294 * 14 13 12 45 45 H 1.09000 * 110.32533 * 118.84459 * 15 5 3 46 46 H 1.09007 * 110.32258 * 240.95175 * 15 5 3 47 47 H 1.09005 * 110.41189 * 142.63076 * 16 15 5 48 48 H 1.09004 * 110.41490 * 265.07737 * 16 15 5 49 49 H 1.08999 * 109.47323 * 44.03816 * 18 17 16 50 50 H 1.09006 * 109.46745 * 164.03788 * 18 17 16 51 51 H 0.96996 * 120.00138 * 0.02562 * 21 19 18 52 52 H 0.96999 * 120.00107 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6388 1.9885 0.8539 5 6 1.6574 2.1489 -1.3185 6 1 1.4963 1.4150 -2.1081 7 7 0.4546 2.9634 -1.1289 8 6 -0.3219 3.2747 -2.1856 9 8 -0.0251 2.8801 -3.2934 10 6 -1.5589 4.1131 -1.9908 11 6 -2.2539 4.3177 -3.3384 12 6 -3.5094 5.1694 -3.1407 13 6 -4.8592 4.5217 -3.4557 14 6 -4.2845 5.5864 -4.3921 15 6 2.8644 3.0468 -1.6596 16 6 3.8761 2.8098 -0.5180 17 7 3.5267 1.4696 0.0196 18 6 4.0387 1.3008 1.3862 19 6 5.5242 1.0516 1.3388 20 8 6.0999 1.0183 0.2717 21 7 6.2130 0.8656 2.4823 22 6 7.5646 0.6394 2.4392 23 1 8.0772 0.6106 1.4890 24 6 8.2747 0.4471 3.6179 25 7 7.6509 0.4826 4.7740 26 14 10.1159 0.1381 3.5592 27 1 10.7917 1.2946 2.9179 28 1 10.6334 -0.0331 4.9406 29 1 10.3867 -1.0919 2.7727 30 1 -0.3633 0.5935 0.8390 31 1 -0.3634 0.4296 -0.9334 32 1 -0.3633 -1.0234 0.0946 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 0.2170 3.2788 -0.2429 36 1 -1.2799 5.0812 -1.5748 37 1 -2.2378 3.6054 -1.3056 38 1 -2.5329 3.3495 -3.7540 39 1 -1.5751 4.8254 -4.0238 40 1 -3.4715 5.8775 -2.3129 41 1 -4.8528 3.4889 -3.8042 42 1 -5.7098 4.8035 -2.8350 43 1 -4.7569 6.5688 -4.3875 44 1 -3.8997 5.2543 -5.3564 45 1 3.2968 2.7526 -2.6159 46 1 2.5615 4.0936 -1.6878 47 1 4.8946 2.8098 -0.9065 48 1 3.7629 3.5706 0.2544 49 1 3.8400 2.2042 1.9628 50 1 3.5428 0.4523 1.8577 51 1 5.7526 0.8918 3.3356 52 1 8.1465 0.3480 5.5969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691963883.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:20 Heat of formation + Delta-G solvation = -80.176851 kcal Electronic energy + Delta-G solvation = -29291.101588 eV Core-core repulsion = 25289.692741 eV Total energy + Delta-G solvation = -4001.408847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40147 -40.32844 -39.31570 -38.29677 -36.02261 -35.36010 -34.29568 -33.38055 -33.19124 -31.95058 -28.65489 -28.15145 -26.29258 -25.53417 -23.78280 -23.18992 -22.57869 -21.45359 -21.30161 -20.99469 -20.69194 -19.85648 -18.02511 -17.77821 -17.52604 -16.77004 -16.57462 -16.40933 -16.22452 -16.07230 -15.74447 -15.46530 -15.37017 -14.92357 -14.77103 -14.42004 -14.35303 -14.02674 -13.91224 -13.66840 -13.41580 -13.04654 -12.97526 -12.91834 -12.67387 -12.46412 -12.42917 -12.40668 -12.34267 -12.20539 -12.11816 -12.09066 -11.98529 -11.83864 -11.51190 -11.46272 -11.19705 -10.81803 -10.70334 -10.33042 -10.03509 -9.98900 -9.38125 -8.45235 -5.93515 1.39913 1.41673 1.52231 1.70912 2.08100 2.10305 2.30756 2.83772 2.95192 3.21301 3.34388 3.41960 3.73144 3.77578 3.86066 4.01675 4.07687 4.09173 4.11534 4.20803 4.28771 4.33309 4.36276 4.39775 4.47635 4.52466 4.56621 4.59687 4.63355 4.65462 4.80274 4.83279 4.90771 5.01435 5.02204 5.08878 5.09695 5.10130 5.18329 5.19456 5.28552 5.30332 5.40968 5.42955 5.45029 5.51505 5.84327 5.96155 6.09753 6.61289 6.63150 7.15105 7.33549 7.58879 8.15792 8.71887 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.001824 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.788380 B =15345.013352 C =15639.187690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.065 3.935 4 H 0.083 0.917 5 C 0.159 3.841 6 H 0.077 0.923 7 N -0.708 5.708 8 C 0.510 3.490 9 O -0.587 6.587 10 C -0.127 4.127 11 C -0.072 4.072 12 C -0.152 4.152 13 C -0.181 4.181 14 C -0.190 4.190 15 C -0.124 4.124 16 C 0.042 3.958 17 N -0.505 5.505 18 C 0.050 3.950 19 C 0.442 3.558 20 O -0.617 6.617 21 N -0.575 5.575 22 C -0.333 4.333 23 H 0.076 0.924 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.273 1.273 28 H -0.269 1.269 29 H -0.274 1.274 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.416 0.584 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.076 0.924 50 H 0.110 0.890 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.608 9.501 -6.505 28.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C -0.044 4.044 4 H 0.101 0.899 5 C 0.052 3.948 6 H 0.096 0.904 7 N -0.360 5.360 8 C 0.298 3.702 9 O -0.467 6.467 10 C -0.167 4.167 11 C -0.110 4.110 12 C -0.170 4.170 13 C -0.218 4.218 14 C -0.227 4.227 15 C -0.163 4.163 16 C -0.086 4.086 17 N -0.230 5.230 18 C -0.081 4.081 19 C 0.229 3.771 20 O -0.503 6.503 21 N -0.213 5.213 22 C -0.463 4.463 23 H 0.094 0.906 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.194 1.194 29 H -0.199 1.199 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.253 0.747 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.140 0.860 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.104 0.896 45 H 0.078 0.922 46 H 0.104 0.896 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.094 0.906 50 H 0.128 0.872 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.705 8.737 -8.101 28.332 hybrid contribution 0.891 0.367 1.113 1.472 sum -24.814 9.104 -6.988 27.340 Atomic orbital electron populations 1.21674 0.93530 1.02378 1.02074 1.21450 0.96763 0.94366 1.02217 1.22980 0.87134 0.97499 0.96737 0.89920 1.21368 0.84191 0.92140 0.97065 0.90436 1.45999 1.25035 1.53460 1.11538 1.21393 0.85159 0.79904 0.83702 1.90715 1.74102 1.55534 1.26379 1.21678 0.93441 1.01372 1.00178 1.20840 0.94966 0.99011 0.96185 1.22355 0.91783 1.02573 1.00309 1.23106 0.97066 0.98061 1.03561 1.23030 1.04644 1.00247 0.94790 1.22648 0.95118 1.00545 0.98034 1.23020 0.99469 0.89179 0.96914 1.64958 1.08521 1.30156 1.19328 1.21900 0.91812 1.03332 0.91084 1.20792 0.90178 0.82327 0.83788 1.90497 1.71968 1.57026 1.30812 1.41902 1.08028 1.63616 1.07709 1.19598 0.84552 1.47898 0.94257 0.90575 1.25977 1.04511 0.96585 0.94020 1.69657 1.38483 1.49879 0.98008 0.85026 0.77116 0.78775 0.77633 1.19841 1.19375 1.19922 0.90953 0.93319 0.92108 0.92988 0.91676 0.74658 0.86314 0.86224 0.92822 0.92692 0.86036 0.89293 0.87701 0.87874 0.89606 0.92241 0.89627 0.92542 0.92797 0.90593 0.87215 0.77000 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.56 71.98 0.69 -1.50 16 2 C -0.11 -2.39 5.56 30.60 0.17 -2.22 16 3 C 0.06 1.44 2.03 45.04 0.09 1.53 16 4 H 0.08 1.40 7.60 -2.39 -0.02 1.39 16 5 C 0.16 3.56 2.17 45.89 0.10 3.66 16 6 H 0.08 2.16 7.27 -2.39 -0.02 2.14 16 7 N -0.71 -10.75 4.65 -438.30 -2.04 -12.79 16 8 C 0.51 9.27 7.83 87.65 0.69 9.95 16 9 O -0.59 -16.77 15.66 -3.03 -0.05 -16.82 16 10 C -0.13 -1.26 5.66 29.84 0.17 -1.09 16 11 C -0.07 -0.99 4.78 30.59 0.15 -0.85 16 12 C -0.15 -1.54 5.74 -10.80 -0.06 -1.60 16 13 C -0.18 -1.80 10.18 30.59 0.31 -1.49 16 14 C -0.19 -2.07 10.25 30.59 0.31 -1.75 16 15 C -0.12 -3.21 6.79 31.49 0.21 -3.00 16 16 C 0.04 1.30 5.96 86.45 0.52 1.82 16 17 N -0.51 -16.08 4.64 -860.78 -3.99 -20.07 16 18 C 0.05 1.69 5.28 85.56 0.45 2.14 16 19 C 0.44 21.10 7.64 87.66 0.67 21.77 16 20 O -0.62 -34.81 14.91 -3.09 -0.05 -34.86 16 21 N -0.57 -29.44 5.29 -306.97 -1.62 -31.07 16 22 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 23 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 24 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 25 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 26 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 28 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 29 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.83 7.38 -2.39 -0.02 0.82 16 32 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.05 1.35 8.07 -2.39 -0.02 1.33 16 34 H 0.06 1.45 7.27 -2.39 -0.02 1.43 16 35 H 0.42 3.51 8.36 -92.71 -0.78 2.74 16 36 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.05 0.92 7.83 -2.39 -0.02 0.90 16 39 H 0.05 0.96 8.10 -2.38 -0.02 0.94 16 40 H 0.12 0.83 8.07 -2.39 -0.02 0.82 16 41 H 0.09 0.98 8.03 -2.39 -0.02 0.96 16 42 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.09 1.92 7.95 -2.38 -0.02 1.90 16 47 H 0.06 2.20 7.33 -2.38 -0.02 2.18 16 48 H 0.05 1.48 7.73 -2.38 -0.02 1.46 16 49 H 0.08 2.18 7.73 -2.39 -0.02 2.16 16 50 H 0.11 3.24 7.14 -2.38 -0.02 3.22 16 51 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 52 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -74.74 418.04 -0.28 -75.01 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.59 Total: 35.41 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 5.74 Total: 9.01 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -7.37 Total: -112.96 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -0.09 Total: -51.68 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -74.74 -0.28 -75.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691963883.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.163 kcal (2) G-P(sol) polarization free energy of solvation -74.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds