Wall clock time and date at job start Tue Mar 31 2020 20:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99948 * 2 1 4 4 C 1.50699 * 120.00034 * 179.72409 * 2 1 3 5 5 C 1.53004 * 109.47242 * 94.99843 * 4 2 1 6 6 H 1.09005 * 109.47026 * 305.00612 * 5 4 2 7 7 N 1.46504 * 109.46820 * 65.00167 * 5 4 2 8 8 C 1.34770 * 119.99987 * 59.99985 * 7 5 4 9 9 C 1.50698 * 120.00304 * 179.97438 * 8 7 5 10 10 O 1.21287 * 120.00054 * 0.02562 * 8 7 5 11 11 C 1.50697 * 109.47438 * 185.00324 * 5 4 2 12 12 O 1.21284 * 120.00222 * 260.00347 * 11 5 4 13 13 N 1.34772 * 120.00047 * 79.99655 * 11 5 4 14 14 C 1.46510 * 119.99991 * 180.02562 * 13 11 5 15 15 H 1.08998 * 110.63875 * 328.14138 * 14 13 11 16 16 C 1.55153 * 110.71819 * 91.48056 * 14 13 11 17 17 C 1.54909 * 101.57924 * 153.86506 * 16 14 13 18 18 N 1.47421 * 104.83566 * 322.99034 * 17 16 14 19 19 C 1.36940 * 125.65205 * 204.09664 * 18 17 16 20 20 H 1.07999 * 120.00116 * 160.74276 * 19 18 17 21 21 C 1.38812 * 119.99905 * 340.73393 * 19 18 17 22 22 N 1.31617 * 119.99823 * 159.99583 * 21 19 18 23 23 Si 1.86797 * 119.99831 * 340.00380 * 21 19 18 24 24 H 1.48503 * 109.47361 * 84.88844 * 23 21 19 25 25 H 1.48504 * 109.47086 * 204.88307 * 23 21 19 26 26 H 1.48499 * 109.47367 * 324.88630 * 23 21 19 27 27 C 1.47032 * 108.70158 * 24.12686 * 18 17 16 28 28 H 1.08997 * 110.00903 * 239.45040 * 27 18 17 29 29 C 1.53000 * 109.87940 * 118.35877 * 27 18 17 30 30 C 1.53003 * 109.47319 * 63.02619 * 29 27 18 31 31 H 1.08002 * 119.99903 * 179.97438 * 1 2 3 32 32 H 1.08002 * 119.99847 * 0.02562 * 1 2 3 33 33 H 1.08995 * 109.47079 * 90.00052 * 3 2 1 34 34 H 1.09003 * 109.46393 * 210.00006 * 3 2 1 35 35 H 1.08994 * 109.47150 * 329.99823 * 3 2 1 36 36 H 1.08996 * 109.47537 * 214.99810 * 4 2 1 37 37 H 1.09004 * 109.47052 * 335.00172 * 4 2 1 38 38 H 0.97001 * 119.99959 * 240.00097 * 7 5 4 39 39 H 1.09005 * 109.46771 * 60.00115 * 9 8 7 40 40 H 1.08995 * 109.47615 * 180.02562 * 9 8 7 41 41 H 1.09001 * 109.47467 * 300.00660 * 9 8 7 42 42 H 0.97000 * 120.00561 * 0.02562 * 13 11 5 43 43 H 1.08997 * 111.00277 * 271.93635 * 16 14 13 44 44 H 1.08996 * 111.00644 * 35.79320 * 16 14 13 45 45 H 1.08999 * 110.37036 * 204.14899 * 17 16 14 46 46 H 1.09005 * 110.37045 * 81.82748 * 17 16 14 47 47 H 0.97001 * 119.99704 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.46936 * 183.01961 * 29 27 18 49 49 H 1.08992 * 109.47322 * 303.01724 * 29 27 18 50 50 H 1.09003 * 109.46452 * 292.03968 * 30 29 27 51 51 H 1.09001 * 109.47132 * 52.03128 * 30 29 27 52 52 H 1.08996 * 109.47496 * 172.03982 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0063 5 6 2.4274 -1.6909 -1.4289 6 1 1.5245 -1.7131 -2.0392 7 7 3.3631 -0.7057 -1.9770 8 6 4.5553 -0.5047 -1.3816 9 6 5.5180 0.5081 -1.9457 10 8 4.8538 -1.1397 -0.3923 11 6 3.0716 -3.0532 -1.4350 12 8 4.2785 -3.1530 -1.5010 13 7 2.3066 -4.1606 -1.3670 14 6 2.9329 -5.4851 -1.3723 15 1 3.8486 -5.4747 -1.9635 16 6 3.2151 -5.9647 0.0760 17 6 3.1968 -7.5039 -0.0970 18 7 2.1358 -7.7598 -1.0880 19 6 1.4376 -8.9298 -1.2259 20 1 0.4918 -8.9360 -1.7472 21 6 1.9458 -10.1078 -0.6960 22 7 1.1445 -11.1271 -0.4697 23 14 3.7669 -10.2462 -0.3036 24 1 4.0256 -9.6904 1.0490 25 1 4.1735 -11.6741 -0.3381 26 1 4.5494 -9.4843 -1.3098 27 6 1.9517 -6.5508 -1.9044 28 1 0.9271 -6.1907 -1.8118 29 6 2.2639 -6.8602 -3.3699 30 6 1.2732 -7.9020 -3.8936 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 2.2452 1.6198 1.0276 34 1 3.0159 1.1747 -0.5139 35 1 1.4745 2.0647 -0.5138 36 1 2.9742 -1.1961 0.5951 37 1 1.4386 -2.0833 0.4443 38 1 3.1245 -0.1982 -2.7685 39 1 5.0522 1.4936 -1.9417 40 1 6.4210 0.5303 -1.3357 41 1 5.7773 0.2330 -2.9681 42 1 1.3413 -4.0809 -1.3145 43 1 4.1916 -5.6216 0.4178 44 1 2.4281 -5.6385 0.7559 45 1 2.9571 -7.9892 0.8491 46 1 4.1583 -7.8552 -0.4716 47 1 1.4996 -11.9501 -0.0990 48 1 2.1775 -5.9478 -3.9602 49 1 3.2784 -7.2505 -3.4508 50 1 1.4554 -8.8567 -3.4001 51 1 0.2554 -7.5730 -3.6840 52 1 1.4032 -8.0185 -4.9694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692015969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:47 Heat of formation + Delta-G solvation = -28.197788 kcal Electronic energy + Delta-G solvation = -31114.424995 eV Core-core repulsion = 27115.270129 eV Total energy + Delta-G solvation = -3999.154866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.73014 -39.14392 -37.79848 -36.67900 -34.27395 -34.08097 -32.52824 -32.14717 -31.20513 -29.42887 -28.63730 -27.44988 -27.08341 -25.03707 -23.84557 -22.19257 -21.59471 -20.56731 -20.20102 -19.22050 -18.64688 -17.73581 -17.13878 -16.79889 -16.24999 -15.68798 -15.28145 -15.20672 -14.96178 -14.66411 -14.32449 -14.12390 -13.78213 -13.63312 -13.52428 -13.33051 -13.10094 -12.85198 -12.74853 -12.48388 -12.46722 -12.28785 -12.09626 -12.02043 -11.80819 -11.57725 -11.39788 -11.30806 -11.11696 -10.91064 -10.64193 -10.33285 -10.27095 -10.13959 -9.96610 -9.82808 -9.74765 -9.47346 -9.26880 -8.85311 -8.76199 -8.60177 -7.04598 -5.93423 -3.24784 1.89452 2.55353 2.78446 2.97301 3.37627 3.39649 3.51249 3.52877 4.45726 4.51803 4.55918 4.72140 4.77584 4.85658 4.88014 5.00281 5.06257 5.16091 5.20132 5.23220 5.26603 5.31376 5.36464 5.43496 5.60229 5.63850 5.65288 5.68856 5.82304 5.84452 5.90432 5.96403 6.11315 6.15749 6.21883 6.33696 6.36978 6.44864 6.53744 6.60636 6.61797 6.63378 6.77212 6.80306 7.03922 7.33962 7.34492 7.65099 7.72132 8.20333 8.31375 8.41498 8.82685 9.68791 10.17248 11.22072 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.002966 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.814020 B = 9439.155763 C = 9766.127308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 C -0.120 4.120 4 C -0.101 4.101 5 C 0.144 3.856 6 H 0.107 0.893 7 N -0.721 5.721 8 C 0.514 3.486 9 C -0.173 4.173 10 O -0.511 6.511 11 C 0.500 3.500 12 O -0.511 6.511 13 N -0.717 5.717 14 C 0.137 3.863 15 H 0.095 0.905 16 C -0.139 4.139 17 C 0.108 3.892 18 N -0.600 5.600 19 C -0.233 4.233 20 H 0.099 0.901 21 C 0.021 3.979 22 N -0.911 5.911 23 Si 0.882 3.118 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.275 1.275 27 C 0.160 3.840 28 H 0.046 0.954 29 C -0.124 4.124 30 C -0.153 4.153 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.402 0.598 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.397 0.603 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.029 0.971 47 H 0.263 0.737 48 H 0.042 0.958 49 H 0.055 0.945 50 H 0.095 0.905 51 H 0.042 0.958 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.391 26.961 -4.220 27.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.115 4.115 3 C -0.176 4.176 4 C -0.140 4.140 5 C 0.034 3.966 6 H 0.125 0.875 7 N -0.375 5.375 8 C 0.301 3.699 9 C -0.233 4.233 10 O -0.384 6.384 11 C 0.283 3.717 12 O -0.384 6.384 13 N -0.369 5.369 14 C 0.032 3.968 15 H 0.113 0.887 16 C -0.178 4.178 17 C -0.017 4.017 18 N -0.326 5.326 19 C -0.360 4.360 20 H 0.116 0.884 21 C -0.177 4.177 22 N -0.555 5.555 23 Si 0.713 3.287 24 H -0.213 1.213 25 H -0.232 1.232 26 H -0.201 1.201 27 C 0.053 3.947 28 H 0.063 0.937 29 C -0.164 4.164 30 C -0.210 4.210 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.237 0.763 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.232 0.768 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.060 0.940 49 H 0.074 0.926 50 H 0.113 0.887 51 H 0.061 0.939 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.468 26.164 -3.494 26.437 hybrid contribution 0.396 -0.012 -0.218 0.452 sum 1.863 26.152 -3.712 26.480 Atomic orbital electron populations 1.23737 0.95092 1.02034 1.02665 1.21609 0.95072 0.95398 0.99440 1.20914 1.00265 0.94369 1.02083 1.21026 1.02250 0.95273 0.95432 1.20792 0.92231 0.86891 0.96637 0.87536 1.45665 1.17689 1.41746 1.32415 1.20582 0.81654 0.83410 0.84230 1.21918 0.99696 0.98294 1.03385 1.90737 1.75095 1.46923 1.25638 1.20758 0.87977 0.85958 0.77022 1.90750 1.13838 1.86620 1.47206 1.45997 1.10044 1.05668 1.75206 1.22068 0.96961 0.80600 0.97183 0.88711 1.23109 1.01577 0.96866 0.96288 1.22004 0.92433 0.93002 0.94250 1.44785 1.42668 1.11269 1.33872 1.18631 1.00569 0.82644 1.34132 0.88383 1.24984 0.97502 0.95482 0.99777 1.69800 1.34040 1.04951 1.46698 0.87018 0.87883 0.75353 0.78417 1.21303 1.23234 1.20058 1.21154 0.95853 0.87266 0.90468 0.93680 1.21903 1.00008 0.97960 0.96524 1.21973 0.97984 1.02520 0.98552 0.88232 0.88501 0.91631 0.91816 0.92020 0.88193 0.89931 0.76348 0.89839 0.89095 0.89596 0.76838 0.91347 0.91030 0.91998 0.95360 0.92724 0.93951 0.92634 0.88667 0.93915 0.95116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.41 13.89 29.01 0.40 -1.01 16 2 C -0.12 -0.92 5.14 -101.07 -0.52 -1.44 16 3 C -0.12 -0.84 9.92 36.01 0.36 -0.48 16 4 C -0.10 -1.00 4.70 -27.88 -0.13 -1.13 16 5 C 0.14 1.38 3.00 -69.08 -0.21 1.18 16 6 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 7 N -0.72 -6.13 4.09 -54.93 -0.22 -6.36 16 8 C 0.51 5.68 5.11 -10.99 -0.06 5.63 16 9 C -0.17 -1.20 10.32 36.00 0.37 -0.83 16 10 O -0.51 -8.23 12.94 -17.94 -0.23 -8.46 16 11 C 0.50 6.96 6.82 -10.99 -0.07 6.88 16 12 O -0.51 -9.39 13.33 -17.94 -0.24 -9.63 16 13 N -0.72 -9.59 5.18 -52.03 -0.27 -9.85 16 14 C 0.14 2.33 2.85 -66.09 -0.19 2.14 16 15 H 0.09 1.78 7.25 -51.93 -0.38 1.41 16 16 C -0.14 -2.54 6.77 -24.58 -0.17 -2.71 16 17 C 0.11 2.39 4.69 -2.53 -0.01 2.38 16 18 N -0.60 -13.86 2.94 -162.57 -0.48 -14.33 16 19 C -0.23 -6.23 7.92 -15.06 -0.12 -6.35 16 20 H 0.10 2.75 6.94 -52.49 -0.36 2.39 16 21 C 0.02 0.59 5.45 -17.43 -0.10 0.50 16 22 N -0.91 -27.57 13.97 55.49 0.78 -26.79 16 23 Si 0.88 22.73 24.25 -169.99 -4.12 18.61 16 24 H -0.29 -7.19 6.52 56.52 0.37 -6.82 16 25 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 26 H -0.27 -7.03 6.47 56.52 0.37 -6.66 16 27 C 0.16 2.99 3.04 -66.95 -0.20 2.79 16 28 H 0.05 0.82 7.71 -51.93 -0.40 0.41 16 29 C -0.12 -2.25 5.49 -26.73 -0.15 -2.40 16 30 C -0.15 -2.88 8.73 37.16 0.32 -2.56 16 31 H 0.10 0.67 7.99 -52.49 -0.42 0.25 16 32 H 0.10 0.60 8.04 -52.49 -0.42 0.17 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.46 5.49 -51.93 -0.29 0.17 16 35 H 0.06 0.34 8.06 -51.93 -0.42 -0.08 16 36 H 0.10 1.30 6.04 -51.93 -0.31 0.99 16 37 H 0.08 0.79 7.99 -51.93 -0.41 0.37 16 38 H 0.40 2.04 8.83 -40.82 -0.36 1.68 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.40 4.24 8.37 -40.82 -0.34 3.89 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.45 6.57 -51.93 -0.34 1.11 16 46 H 0.03 0.67 5.43 -51.93 -0.28 0.38 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 48 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 49 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.09 2.14 5.41 -51.93 -0.28 1.86 16 51 H 0.04 0.77 8.13 -51.93 -0.42 0.34 16 52 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 398.58 15.07 6.01 6.01 Total: -1.00 -35.26 398.58 -8.12 -43.38 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -8.87 Total: 4.83 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -0.46 Total: 2.60 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.20 Total: -57.34 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.47 Total: -18.09 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.12 Total: 18.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.26 -8.12 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692015969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.179 kcal (2) G-P(sol) polarization free energy of solvation -35.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds