Wall clock time and date at job start Tue Mar 31 2020 20:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99948 * 2 1 4 4 C 1.50699 * 120.00034 * 179.72409 * 2 1 3 5 5 C 1.53004 * 109.47242 * 94.99843 * 4 2 1 6 6 H 1.09005 * 109.47026 * 305.00612 * 5 4 2 7 7 N 1.46504 * 109.46820 * 65.00167 * 5 4 2 8 8 C 1.34770 * 119.99987 * 59.99985 * 7 5 4 9 9 C 1.50698 * 120.00304 * 179.97438 * 8 7 5 10 10 O 1.21287 * 120.00054 * 0.02562 * 8 7 5 11 11 C 1.50697 * 109.47438 * 185.00324 * 5 4 2 12 12 O 1.21284 * 120.00222 * 260.00347 * 11 5 4 13 13 N 1.34772 * 120.00047 * 79.99655 * 11 5 4 14 14 C 1.46510 * 119.99991 * 180.02562 * 13 11 5 15 15 H 1.08998 * 110.63875 * 328.14138 * 14 13 11 16 16 C 1.55153 * 110.71819 * 91.48056 * 14 13 11 17 17 C 1.54909 * 101.57924 * 153.86506 * 16 14 13 18 18 N 1.47421 * 104.83566 * 322.99034 * 17 16 14 19 19 C 1.36940 * 125.65205 * 204.09664 * 18 17 16 20 20 H 1.07999 * 120.00116 * 160.74276 * 19 18 17 21 21 C 1.38812 * 119.99905 * 340.73393 * 19 18 17 22 22 N 1.31617 * 119.99823 * 159.99583 * 21 19 18 23 23 Si 1.86797 * 119.99831 * 340.00380 * 21 19 18 24 24 H 1.48503 * 109.47361 * 84.88844 * 23 21 19 25 25 H 1.48504 * 109.47086 * 204.88307 * 23 21 19 26 26 H 1.48499 * 109.47367 * 324.88630 * 23 21 19 27 27 C 1.47032 * 108.70158 * 24.12686 * 18 17 16 28 28 H 1.08997 * 110.00903 * 239.45040 * 27 18 17 29 29 C 1.53000 * 109.87940 * 118.35877 * 27 18 17 30 30 C 1.53003 * 109.47319 * 63.02619 * 29 27 18 31 31 H 1.08002 * 119.99903 * 179.97438 * 1 2 3 32 32 H 1.08002 * 119.99847 * 0.02562 * 1 2 3 33 33 H 1.08995 * 109.47079 * 90.00052 * 3 2 1 34 34 H 1.09003 * 109.46393 * 210.00006 * 3 2 1 35 35 H 1.08994 * 109.47150 * 329.99823 * 3 2 1 36 36 H 1.08996 * 109.47537 * 214.99810 * 4 2 1 37 37 H 1.09004 * 109.47052 * 335.00172 * 4 2 1 38 38 H 0.97001 * 119.99959 * 240.00097 * 7 5 4 39 39 H 1.09005 * 109.46771 * 60.00115 * 9 8 7 40 40 H 1.08995 * 109.47615 * 180.02562 * 9 8 7 41 41 H 1.09001 * 109.47467 * 300.00660 * 9 8 7 42 42 H 0.97000 * 120.00561 * 0.02562 * 13 11 5 43 43 H 1.08997 * 111.00277 * 271.93635 * 16 14 13 44 44 H 1.08996 * 111.00644 * 35.79320 * 16 14 13 45 45 H 1.08999 * 110.37036 * 204.14899 * 17 16 14 46 46 H 1.09005 * 110.37045 * 81.82748 * 17 16 14 47 47 H 0.97001 * 119.99704 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.46936 * 183.01961 * 29 27 18 49 49 H 1.08992 * 109.47322 * 303.01724 * 29 27 18 50 50 H 1.09003 * 109.46452 * 292.03968 * 30 29 27 51 51 H 1.09001 * 109.47132 * 52.03128 * 30 29 27 52 52 H 1.08996 * 109.47496 * 172.03982 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0063 5 6 2.4274 -1.6909 -1.4289 6 1 1.5245 -1.7131 -2.0392 7 7 3.3631 -0.7057 -1.9770 8 6 4.5553 -0.5047 -1.3816 9 6 5.5180 0.5081 -1.9457 10 8 4.8538 -1.1397 -0.3923 11 6 3.0716 -3.0532 -1.4350 12 8 4.2785 -3.1530 -1.5010 13 7 2.3066 -4.1606 -1.3670 14 6 2.9329 -5.4851 -1.3723 15 1 3.8486 -5.4747 -1.9635 16 6 3.2151 -5.9647 0.0760 17 6 3.1968 -7.5039 -0.0970 18 7 2.1358 -7.7598 -1.0880 19 6 1.4376 -8.9298 -1.2259 20 1 0.4918 -8.9360 -1.7472 21 6 1.9458 -10.1078 -0.6960 22 7 1.1445 -11.1271 -0.4697 23 14 3.7669 -10.2462 -0.3036 24 1 4.0256 -9.6904 1.0490 25 1 4.1735 -11.6741 -0.3381 26 1 4.5494 -9.4843 -1.3098 27 6 1.9517 -6.5508 -1.9044 28 1 0.9271 -6.1907 -1.8118 29 6 2.2639 -6.8602 -3.3699 30 6 1.2732 -7.9020 -3.8936 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 2.2452 1.6198 1.0276 34 1 3.0159 1.1747 -0.5139 35 1 1.4745 2.0647 -0.5138 36 1 2.9742 -1.1961 0.5951 37 1 1.4386 -2.0833 0.4443 38 1 3.1245 -0.1982 -2.7685 39 1 5.0522 1.4936 -1.9417 40 1 6.4210 0.5303 -1.3357 41 1 5.7773 0.2330 -2.9681 42 1 1.3413 -4.0809 -1.3145 43 1 4.1916 -5.6216 0.4178 44 1 2.4281 -5.6385 0.7559 45 1 2.9571 -7.9892 0.8491 46 1 4.1583 -7.8552 -0.4716 47 1 1.4996 -11.9501 -0.0990 48 1 2.1775 -5.9478 -3.9602 49 1 3.2784 -7.2505 -3.4508 50 1 1.4554 -8.8567 -3.4001 51 1 0.2554 -7.5730 -3.6840 52 1 1.4032 -8.0185 -4.9694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692015969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:46 Heat of formation + Delta-G solvation = -53.228701 kcal Electronic energy + Delta-G solvation = -31115.510417 eV Core-core repulsion = 27115.270129 eV Total energy + Delta-G solvation = -4000.240288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.70052 -40.42304 -39.13251 -37.42248 -35.63438 -34.96552 -34.19344 -33.91222 -32.10519 -30.99999 -29.41601 -28.63188 -27.94055 -26.45513 -25.13532 -23.92290 -22.72372 -21.82098 -21.48142 -20.58909 -19.26704 -18.92356 -18.54940 -17.97659 -17.54073 -17.03247 -16.68571 -16.13995 -16.01169 -15.82479 -15.41095 -15.31765 -14.89796 -14.85512 -14.69577 -14.59810 -14.35895 -14.09776 -13.97861 -13.85414 -13.58916 -13.33256 -13.12503 -13.06713 -13.03462 -12.85926 -12.62740 -12.57834 -12.38806 -12.30292 -12.01881 -11.96881 -11.92770 -11.68926 -11.57959 -11.25571 -11.09150 -10.74399 -10.58628 -10.19810 -9.99487 -9.62812 -9.03185 -8.12753 -5.38451 1.28644 1.29678 1.37779 1.43443 1.66194 1.81983 2.13849 2.42437 2.47723 3.07927 3.28485 3.63720 3.70270 3.74900 3.86207 4.06332 4.09055 4.14095 4.16133 4.20204 4.24336 4.38674 4.44706 4.55249 4.58380 4.64642 4.66134 4.70496 4.79852 4.82521 4.85317 4.89435 4.98127 5.04823 5.06871 5.10122 5.11601 5.15782 5.18856 5.19682 5.37868 5.49686 5.60027 5.67377 5.78665 5.78953 6.03182 6.16342 6.60184 6.70084 6.77888 7.30874 7.52561 7.57311 8.12978 9.06564 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.002966 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.814020 B = 9439.155763 C = 9766.127308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.095 4.095 5 C 0.150 3.850 6 H 0.147 0.853 7 N -0.707 5.707 8 C 0.506 3.494 9 C -0.167 4.167 10 O -0.569 6.569 11 C 0.497 3.503 12 O -0.556 6.556 13 N -0.705 5.705 14 C 0.153 3.847 15 H 0.079 0.921 16 C -0.127 4.127 17 C 0.104 3.896 18 N -0.614 5.614 19 C -0.199 4.199 20 H 0.083 0.917 21 C -0.035 4.035 22 N -0.957 5.957 23 Si 0.929 3.071 24 H -0.280 1.280 25 H -0.313 1.313 26 H -0.275 1.275 27 C 0.159 3.841 28 H 0.064 0.936 29 C -0.120 4.120 30 C -0.147 4.147 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.422 0.578 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.415 0.585 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.045 0.955 46 H 0.017 0.983 47 H 0.259 0.741 48 H 0.077 0.923 49 H 0.036 0.964 50 H 0.052 0.948 51 H 0.050 0.950 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 30.684 -5.729 31.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.127 4.127 3 C -0.175 4.175 4 C -0.134 4.134 5 C 0.041 3.959 6 H 0.165 0.835 7 N -0.362 5.362 8 C 0.295 3.705 9 C -0.227 4.227 10 O -0.446 6.446 11 C 0.282 3.718 12 O -0.432 6.432 13 N -0.358 5.358 14 C 0.046 3.954 15 H 0.097 0.903 16 C -0.167 4.167 17 C -0.021 4.021 18 N -0.340 5.340 19 C -0.328 4.328 20 H 0.100 0.900 21 C -0.229 4.229 22 N -0.605 5.605 23 Si 0.760 3.240 24 H -0.206 1.206 25 H -0.242 1.242 26 H -0.201 1.201 27 C 0.052 3.948 28 H 0.082 0.918 29 C -0.159 4.159 30 C -0.205 4.205 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.260 0.740 39 H 0.135 0.865 40 H 0.097 0.903 41 H 0.120 0.880 42 H 0.252 0.748 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.068 0.932 48 H 0.095 0.905 49 H 0.055 0.945 50 H 0.070 0.930 51 H 0.069 0.931 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.328 29.975 -5.050 30.399 hybrid contribution 0.673 -1.055 0.202 1.268 sum 1.001 28.920 -4.848 29.340 Atomic orbital electron populations 1.23900 0.94652 1.02972 1.00637 1.21510 0.95336 0.94691 1.01199 1.20912 1.00356 0.94444 1.01815 1.20906 1.00928 0.96639 0.94907 1.20855 0.93183 0.84354 0.97558 0.83546 1.45580 1.16878 1.41086 1.32660 1.21323 0.82494 0.83266 0.83450 1.21924 0.98449 0.98777 1.03502 1.90721 1.76373 1.49292 1.28263 1.21580 0.87475 0.87292 0.75437 1.90743 1.16058 1.87344 1.49100 1.45804 1.10903 1.04168 1.74915 1.21640 0.96106 0.81990 0.95637 0.90273 1.22999 1.02154 0.93876 0.97638 1.21986 0.91403 0.95630 0.93109 1.44900 1.42373 1.11402 1.35341 1.18601 0.99724 0.83606 1.30865 0.89962 1.25434 0.99999 0.95856 1.01633 1.69892 1.35200 1.05624 1.49781 0.86249 0.84744 0.74526 0.78459 1.20649 1.24212 1.20105 1.21332 0.97190 0.85835 0.90402 0.91825 1.21847 0.98633 0.99116 0.96315 1.21844 0.98603 1.00409 0.99599 0.87666 0.87200 0.92494 0.92204 0.90175 0.91717 0.89742 0.74024 0.86523 0.90319 0.88034 0.74808 0.91327 0.89717 0.93683 0.96571 0.93190 0.90475 0.94463 0.92953 0.93125 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.94 13.89 67.78 0.94 -0.99 16 2 C -0.13 -1.68 5.14 -16.49 -0.08 -1.76 16 3 C -0.12 -1.37 9.92 71.24 0.71 -0.66 16 4 C -0.10 -1.70 4.70 29.85 0.14 -1.56 16 5 C 0.15 2.45 3.00 44.24 0.13 2.58 16 6 H 0.15 1.24 8.14 -2.38 -0.02 1.22 16 7 N -0.71 -10.13 4.09 -446.09 -1.82 -11.95 16 8 C 0.51 10.53 5.11 87.66 0.45 10.98 16 9 C -0.17 -1.97 10.32 71.24 0.74 -1.24 16 10 O -0.57 -18.54 12.94 19.41 0.25 -18.29 16 11 C 0.50 12.82 6.82 87.66 0.60 13.41 16 12 O -0.56 -20.04 13.33 19.42 0.26 -19.78 16 13 N -0.70 -16.89 5.18 -436.92 -2.26 -19.15 16 14 C 0.15 4.92 2.85 46.18 0.13 5.05 16 15 H 0.08 2.88 7.25 -2.39 -0.02 2.86 16 16 C -0.13 -4.52 6.77 31.98 0.22 -4.30 16 17 C 0.10 4.57 4.69 86.86 0.41 4.97 16 18 N -0.61 -28.08 2.94 -668.24 -1.96 -30.04 16 19 C -0.20 -10.77 7.92 84.03 0.67 -10.11 16 20 H 0.08 4.68 6.94 -2.91 -0.02 4.66 16 21 C -0.04 -2.06 5.45 84.86 0.46 -1.59 16 22 N -0.96 -59.71 13.97 21.65 0.30 -59.41 16 23 Si 0.93 48.22 24.25 68.60 1.66 49.89 16 24 H -0.28 -14.03 6.52 99.48 0.65 -13.39 16 25 H -0.31 -16.57 7.11 99.48 0.71 -15.86 16 26 H -0.28 -14.07 6.47 99.48 0.64 -13.43 16 27 C 0.16 5.62 3.04 45.34 0.14 5.75 16 28 H 0.06 2.08 7.71 -2.39 -0.02 2.06 16 29 C -0.12 -4.07 5.49 30.60 0.17 -3.90 16 30 C -0.15 -5.30 8.73 71.98 0.63 -4.67 16 31 H 0.11 0.99 7.99 -2.91 -0.02 0.97 16 32 H 0.11 0.90 8.04 -2.91 -0.02 0.88 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.72 5.49 -2.39 -0.01 0.71 16 35 H 0.08 0.61 8.06 -2.39 -0.02 0.59 16 36 H 0.06 1.68 6.04 -2.39 -0.01 1.66 16 37 H 0.08 1.42 7.99 -2.38 -0.02 1.40 16 38 H 0.42 2.66 8.83 -92.71 -0.82 1.84 16 39 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.08 1.14 8.12 -2.39 -0.02 1.13 16 41 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.41 7.22 8.37 -92.71 -0.78 6.44 16 43 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.04 2.12 6.57 -2.39 -0.02 2.10 16 46 H 0.02 0.77 5.43 -2.38 -0.01 0.76 16 47 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 48 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 49 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.05 2.35 5.41 -2.39 -0.01 2.33 16 51 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 52 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -80.91 398.58 2.07 -78.84 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -0.79 Total: 17.95 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 6.43 Total: 11.95 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -5.75 Total: -120.56 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: 0.51 Total: -38.07 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.66 Total: 49.89 kcal Total: -80.91 2.07 -78.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692015969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.609 kcal (2) G-P(sol) polarization free energy of solvation -80.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds