Wall clock time and date at job start Tue Mar 31 2020 20:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 120.00113 * 2 1 4 4 C 1.50695 * 120.00217 * 180.02562 * 2 1 3 5 5 C 1.53004 * 109.47415 * 94.99571 * 4 2 1 6 6 H 1.09003 * 109.46659 * 55.00458 * 5 4 2 7 7 N 1.46492 * 109.47179 * 295.00628 * 5 4 2 8 8 C 1.34777 * 119.99970 * 299.99505 * 7 5 4 9 9 C 1.50707 * 120.00178 * 180.02562 * 8 7 5 10 10 O 1.21287 * 120.00082 * 0.02562 * 8 7 5 11 11 C 1.50697 * 109.47067 * 175.00068 * 5 4 2 12 12 O 1.21283 * 119.99736 * 100.00270 * 11 5 4 13 13 N 1.34773 * 120.00360 * 279.99914 * 11 5 4 14 14 C 1.46498 * 120.00234 * 180.02562 * 13 11 5 15 15 H 1.09005 * 110.63955 * 323.31182 * 14 13 11 16 16 C 1.55156 * 110.72100 * 86.45509 * 14 13 11 17 17 C 1.54906 * 101.58173 * 153.86631 * 16 14 13 18 18 N 1.47432 * 104.83353 * 322.99000 * 17 16 14 19 19 C 1.36933 * 125.64749 * 204.16351 * 18 17 16 20 20 H 1.08007 * 119.99642 * 168.08257 * 19 18 17 21 21 C 1.38811 * 120.00500 * 348.08423 * 19 18 17 22 22 N 1.31616 * 119.99775 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00279 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47124 * 60.00005 * 23 21 19 25 25 H 1.48498 * 109.47206 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46870 * 300.00036 * 23 21 19 27 27 C 1.47019 * 108.70013 * 24.12904 * 18 17 16 28 28 H 1.08998 * 109.88433 * 239.52447 * 27 18 17 29 29 C 1.53004 * 109.88308 * 118.35742 * 27 18 17 30 30 C 1.53000 * 109.47412 * 177.29349 * 29 27 18 31 31 H 1.07994 * 119.99838 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99775 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.47526 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46980 * 60.00117 * 3 2 1 35 35 H 1.09004 * 109.47245 * 300.00083 * 3 2 1 36 36 H 1.08998 * 109.47754 * 214.99942 * 4 2 1 37 37 H 1.09004 * 109.47123 * 335.00080 * 4 2 1 38 38 H 0.97003 * 120.00539 * 119.99819 * 7 5 4 39 39 H 1.09002 * 109.47068 * 90.00269 * 9 8 7 40 40 H 1.09008 * 109.46920 * 210.00002 * 9 8 7 41 41 H 1.08996 * 109.46714 * 330.00201 * 9 8 7 42 42 H 0.97007 * 119.99988 * 0.02562 * 13 11 5 43 43 H 1.08996 * 111.00338 * 271.94203 * 16 14 13 44 44 H 1.08996 * 111.00026 * 35.75400 * 16 14 13 45 45 H 1.09000 * 110.37152 * 81.82965 * 17 16 14 46 46 H 1.09003 * 110.36805 * 204.04263 * 17 16 14 47 47 H 0.96998 * 120.00407 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.47304 * 297.29345 * 29 27 18 49 49 H 1.08995 * 109.46914 * 57.29298 * 29 27 18 50 50 H 1.09000 * 109.46950 * 65.49229 * 30 29 27 51 51 H 1.08993 * 109.47132 * 185.49857 * 30 29 27 52 52 H 1.09004 * 109.47131 * 305.49936 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 1 2.9771 -0.8639 -1.9010 7 7 1.2031 -1.9423 -2.1994 8 6 0.3606 -2.9191 -1.8091 9 6 -0.8987 -3.1859 -2.5930 10 8 0.6157 -3.5834 -0.8270 11 6 3.2853 -2.9222 -1.4293 12 8 2.7911 -4.0037 -1.6680 13 7 4.6018 -2.8284 -1.1564 14 6 5.4359 -4.0327 -1.1487 15 1 4.8836 -4.8801 -0.7424 16 6 5.9558 -4.3497 -2.5758 17 6 7.2578 -5.1298 -2.2664 18 7 7.8232 -4.4645 -1.0785 19 6 9.1426 -4.4716 -0.7121 20 1 9.4921 -3.8025 0.0604 21 6 10.0309 -5.3385 -1.3335 22 7 9.6049 -6.1541 -2.2745 23 14 11.8306 -5.3487 -0.8331 24 1 11.9420 -5.6925 0.6072 25 1 12.5632 -6.3571 -1.6404 26 1 12.4172 -4.0048 -1.0681 27 6 6.7360 -3.7914 -0.3529 28 1 6.9388 -2.7223 -0.2896 29 6 6.6036 -4.3830 1.0519 30 6 5.5158 -3.6312 1.8215 31 1 -0.5399 -0.9353 0.0004 32 1 -0.5400 0.9354 0.0004 33 1 3.1352 1.1060 0.0005 34 1 1.8003 1.8767 0.8900 35 1 1.8003 1.8767 -0.8900 36 1 2.9743 -1.1991 0.5889 37 1 1.4386 -2.0856 0.4334 38 1 0.9988 -1.4107 -2.9847 39 1 -0.6941 -3.9233 -3.3692 40 1 -1.6695 -3.5676 -1.9233 41 1 -1.2431 -2.2599 -3.0532 42 1 4.9971 -1.9634 -0.9651 43 1 5.2467 -4.9731 -3.1203 44 1 6.1700 -3.4334 -3.1259 45 1 7.0316 -6.1729 -2.0453 46 1 7.9493 -5.0621 -3.1063 47 1 10.2255 -6.7603 -2.7085 48 1 6.3345 -5.4367 0.9785 49 1 7.5534 -4.2864 1.5778 50 1 4.5491 -3.8081 1.3501 51 1 5.4882 -3.9863 2.8516 52 1 5.7351 -2.5635 1.8109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692015970.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:51 Heat of formation + Delta-G solvation = -36.064629 kcal Electronic energy + Delta-G solvation = -31169.860512 eV Core-core repulsion = 27170.364514 eV Total energy + Delta-G solvation = -3999.495998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.59686 -38.95617 -37.49995 -36.58759 -34.16600 -33.91154 -32.71715 -31.77116 -30.97167 -29.08242 -28.49159 -27.54545 -26.52747 -24.88127 -23.93498 -22.17912 -21.17193 -20.31318 -20.01474 -19.25207 -18.59244 -17.58603 -16.88922 -16.76406 -16.10098 -15.41806 -15.08301 -14.99123 -14.71337 -14.42366 -14.30856 -13.96379 -13.80488 -13.68183 -13.55695 -13.30219 -13.07372 -12.70410 -12.65702 -12.44567 -12.18360 -11.98790 -11.91204 -11.87065 -11.68996 -11.58453 -11.19390 -11.09707 -10.86624 -10.81552 -10.56406 -10.39833 -10.25284 -10.09784 -9.92016 -9.69308 -9.62229 -9.61152 -9.33398 -8.82726 -8.59905 -8.48979 -6.81230 -5.72501 -3.09040 1.95521 2.67347 2.90671 3.09391 3.39653 3.44237 3.45558 3.54543 4.47745 4.55057 4.61442 4.76481 4.88578 4.96736 4.98777 5.10098 5.23158 5.29426 5.33910 5.36673 5.38852 5.47406 5.56400 5.58145 5.67144 5.68731 5.71632 5.79759 5.84805 5.90905 5.93446 6.10460 6.25651 6.27459 6.37430 6.42462 6.45171 6.51258 6.62318 6.66130 6.72307 6.79547 6.98618 7.19751 7.44382 7.54876 7.61295 7.80221 7.82034 8.28082 8.30913 8.56181 9.19714 9.80894 10.48192 11.38377 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002879 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.097890 B = 9722.597199 C =10431.404540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 C -0.121 4.121 4 C -0.100 4.100 5 C 0.142 3.858 6 H 0.105 0.895 7 N -0.719 5.719 8 C 0.516 3.484 9 C -0.171 4.171 10 O -0.514 6.514 11 C 0.499 3.501 12 O -0.511 6.511 13 N -0.716 5.716 14 C 0.142 3.858 15 H 0.090 0.910 16 C -0.155 4.155 17 C 0.173 3.827 18 N -0.594 5.594 19 C -0.227 4.227 20 H 0.075 0.925 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.162 3.838 28 H 0.034 0.966 29 C -0.132 4.132 30 C -0.146 4.146 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.402 0.598 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.394 0.606 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.024 0.976 46 H 0.079 0.921 47 H 0.254 0.746 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.049 0.951 51 H 0.044 0.956 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.359 15.216 0.138 24.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.119 4.119 3 C -0.178 4.178 4 C -0.139 4.139 5 C 0.033 3.967 6 H 0.123 0.877 7 N -0.373 5.373 8 C 0.302 3.698 9 C -0.231 4.231 10 O -0.387 6.387 11 C 0.282 3.718 12 O -0.384 6.384 13 N -0.368 5.368 14 C 0.037 3.963 15 H 0.108 0.892 16 C -0.195 4.195 17 C 0.047 3.953 18 N -0.319 5.319 19 C -0.355 4.355 20 H 0.093 0.907 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.741 3.259 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.054 3.946 28 H 0.052 0.948 29 C -0.172 4.172 30 C -0.204 4.204 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.236 0.764 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.228 0.772 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.042 0.958 46 H 0.097 0.903 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.069 0.931 51 H 0.063 0.937 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.338 13.767 0.601 23.746 hybrid contribution 1.124 0.599 -0.071 1.276 sum -18.214 14.366 0.530 23.204 Atomic orbital electron populations 1.23642 0.95352 1.01503 1.02217 1.21636 0.95375 0.95084 0.99814 1.20885 1.00271 0.94650 1.01994 1.21066 1.01939 0.95966 0.94898 1.20733 0.86199 0.95746 0.94058 0.87722 1.45643 1.22076 1.37868 1.31664 1.20579 0.84752 0.78957 0.85479 1.21863 0.95862 1.03498 1.01832 1.90728 1.74778 1.46241 1.26983 1.20677 0.82384 0.90989 0.77714 1.90748 1.72418 1.28636 1.46614 1.46048 1.08084 1.10915 1.71723 1.22048 0.90477 0.86787 0.96977 0.89201 1.23402 0.99733 1.00802 0.95523 1.21478 0.89680 0.93011 0.91094 1.44449 1.02249 1.60765 1.24433 1.18911 0.82298 1.16131 1.18184 0.90704 1.24865 0.98440 0.97581 0.99264 1.69914 1.33673 1.25511 1.27379 0.86225 0.84617 0.77178 0.77868 1.21129 1.21620 1.21167 1.21054 0.87288 0.95706 0.90541 0.94800 1.22013 0.98239 0.99775 0.97123 1.21767 0.99370 0.99839 0.99446 0.88741 0.88694 0.91734 0.91591 0.91645 0.89952 0.88312 0.76429 0.89008 0.89214 0.90628 0.77196 0.92105 0.92198 0.95775 0.90298 0.93607 0.92414 0.91829 0.93142 0.93736 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 13.72 29.01 0.40 -1.15 16 2 C -0.12 -0.98 5.08 -101.07 -0.51 -1.49 16 3 C -0.12 -0.77 10.05 36.01 0.36 -0.40 16 4 C -0.10 -1.03 4.63 -27.88 -0.13 -1.16 16 5 C 0.14 1.47 3.00 -69.09 -0.21 1.26 16 6 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 7 N -0.72 -6.79 4.74 -54.93 -0.26 -7.05 16 8 C 0.52 6.16 6.40 -10.98 -0.07 6.09 16 9 C -0.17 -1.33 10.30 36.01 0.37 -0.96 16 10 O -0.51 -8.66 12.96 -17.94 -0.23 -8.90 16 11 C 0.50 7.40 6.81 -10.99 -0.07 7.33 16 12 O -0.51 -9.92 13.41 -17.93 -0.24 -10.16 16 13 N -0.72 -10.27 4.93 -52.03 -0.26 -10.53 16 14 C 0.14 2.60 1.92 -66.10 -0.13 2.47 16 15 H 0.09 1.86 7.34 -51.93 -0.38 1.48 16 16 C -0.15 -3.09 6.77 -24.58 -0.17 -3.25 16 17 C 0.17 4.22 5.46 -2.53 -0.01 4.21 16 18 N -0.59 -14.75 3.13 -162.57 -0.51 -15.26 16 19 C -0.23 -6.15 9.77 -15.06 -0.15 -6.30 16 20 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 21 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 22 N -0.92 -26.76 10.47 55.49 0.58 -26.18 16 23 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.16 3.23 2.94 -66.95 -0.20 3.04 16 28 H 0.03 0.65 7.69 -51.93 -0.40 0.25 16 29 C -0.13 -2.50 5.41 -26.73 -0.14 -2.65 16 30 C -0.15 -2.24 9.57 37.16 0.36 -1.88 16 31 H 0.09 0.89 7.69 -52.49 -0.40 0.48 16 32 H 0.09 0.64 8.05 -52.48 -0.42 0.21 16 33 H 0.06 0.38 8.00 -51.93 -0.42 -0.03 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.34 5.89 -51.93 -0.31 1.03 16 38 H 0.40 2.45 8.83 -40.82 -0.36 2.09 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.39 4.59 8.31 -40.82 -0.34 4.25 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.02 0.65 8.11 -51.93 -0.42 0.23 16 46 H 0.08 2.14 6.73 -51.93 -0.35 1.79 16 47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 49 H 0.06 1.28 7.91 -51.93 -0.41 0.87 16 50 H 0.05 0.80 7.38 -51.93 -0.38 0.41 16 51 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 52 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 413.52 15.07 6.23 6.23 Total: -1.00 -34.79 413.52 -9.32 -44.11 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -9.21 Total: 5.97 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -0.40 Total: 4.92 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.44 Total: -59.02 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.47 Total: -19.06 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.79 -9.32 -44.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692015970.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.045 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds