Wall clock time and date at job start Tue Mar 31 2020 20:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 120.00113 * 2 1 4 4 C 1.50695 * 120.00217 * 180.02562 * 2 1 3 5 5 C 1.53004 * 109.47415 * 94.99571 * 4 2 1 6 6 H 1.09003 * 109.46659 * 55.00458 * 5 4 2 7 7 N 1.46492 * 109.47179 * 295.00628 * 5 4 2 8 8 C 1.34777 * 119.99970 * 299.99505 * 7 5 4 9 9 C 1.50707 * 120.00178 * 180.02562 * 8 7 5 10 10 O 1.21287 * 120.00082 * 0.02562 * 8 7 5 11 11 C 1.50697 * 109.47067 * 175.00068 * 5 4 2 12 12 O 1.21283 * 119.99736 * 100.00270 * 11 5 4 13 13 N 1.34773 * 120.00360 * 279.99914 * 11 5 4 14 14 C 1.46498 * 120.00234 * 180.02562 * 13 11 5 15 15 H 1.09005 * 110.63955 * 323.31182 * 14 13 11 16 16 C 1.55156 * 110.72100 * 86.45509 * 14 13 11 17 17 C 1.54906 * 101.58173 * 153.86631 * 16 14 13 18 18 N 1.47432 * 104.83353 * 322.99000 * 17 16 14 19 19 C 1.36933 * 125.64749 * 204.16351 * 18 17 16 20 20 H 1.08007 * 119.99642 * 168.08257 * 19 18 17 21 21 C 1.38811 * 120.00500 * 348.08423 * 19 18 17 22 22 N 1.31616 * 119.99775 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00279 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47124 * 60.00005 * 23 21 19 25 25 H 1.48498 * 109.47206 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46870 * 300.00036 * 23 21 19 27 27 C 1.47019 * 108.70013 * 24.12904 * 18 17 16 28 28 H 1.08998 * 109.88433 * 239.52447 * 27 18 17 29 29 C 1.53004 * 109.88308 * 118.35742 * 27 18 17 30 30 C 1.53000 * 109.47412 * 177.29349 * 29 27 18 31 31 H 1.07994 * 119.99838 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99775 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.47526 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46980 * 60.00117 * 3 2 1 35 35 H 1.09004 * 109.47245 * 300.00083 * 3 2 1 36 36 H 1.08998 * 109.47754 * 214.99942 * 4 2 1 37 37 H 1.09004 * 109.47123 * 335.00080 * 4 2 1 38 38 H 0.97003 * 120.00539 * 119.99819 * 7 5 4 39 39 H 1.09002 * 109.47068 * 90.00269 * 9 8 7 40 40 H 1.09008 * 109.46920 * 210.00002 * 9 8 7 41 41 H 1.08996 * 109.46714 * 330.00201 * 9 8 7 42 42 H 0.97007 * 119.99988 * 0.02562 * 13 11 5 43 43 H 1.08996 * 111.00338 * 271.94203 * 16 14 13 44 44 H 1.08996 * 111.00026 * 35.75400 * 16 14 13 45 45 H 1.09000 * 110.37152 * 81.82965 * 17 16 14 46 46 H 1.09003 * 110.36805 * 204.04263 * 17 16 14 47 47 H 0.96998 * 120.00407 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.47304 * 297.29345 * 29 27 18 49 49 H 1.08995 * 109.46914 * 57.29298 * 29 27 18 50 50 H 1.09000 * 109.46950 * 65.49229 * 30 29 27 51 51 H 1.08993 * 109.47132 * 185.49857 * 30 29 27 52 52 H 1.09004 * 109.47131 * 305.49936 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 1 2.9771 -0.8639 -1.9010 7 7 1.2031 -1.9423 -2.1994 8 6 0.3606 -2.9191 -1.8091 9 6 -0.8987 -3.1859 -2.5930 10 8 0.6157 -3.5834 -0.8270 11 6 3.2853 -2.9222 -1.4293 12 8 2.7911 -4.0037 -1.6680 13 7 4.6018 -2.8284 -1.1564 14 6 5.4359 -4.0327 -1.1487 15 1 4.8836 -4.8801 -0.7424 16 6 5.9558 -4.3497 -2.5758 17 6 7.2578 -5.1298 -2.2664 18 7 7.8232 -4.4645 -1.0785 19 6 9.1426 -4.4716 -0.7121 20 1 9.4921 -3.8025 0.0604 21 6 10.0309 -5.3385 -1.3335 22 7 9.6049 -6.1541 -2.2745 23 14 11.8306 -5.3487 -0.8331 24 1 11.9420 -5.6925 0.6072 25 1 12.5632 -6.3571 -1.6404 26 1 12.4172 -4.0048 -1.0681 27 6 6.7360 -3.7914 -0.3529 28 1 6.9388 -2.7223 -0.2896 29 6 6.6036 -4.3830 1.0519 30 6 5.5158 -3.6312 1.8215 31 1 -0.5399 -0.9353 0.0004 32 1 -0.5400 0.9354 0.0004 33 1 3.1352 1.1060 0.0005 34 1 1.8003 1.8767 0.8900 35 1 1.8003 1.8767 -0.8900 36 1 2.9743 -1.1991 0.5889 37 1 1.4386 -2.0856 0.4334 38 1 0.9988 -1.4107 -2.9847 39 1 -0.6941 -3.9233 -3.3692 40 1 -1.6695 -3.5676 -1.9233 41 1 -1.2431 -2.2599 -3.0532 42 1 4.9971 -1.9634 -0.9651 43 1 5.2467 -4.9731 -3.1203 44 1 6.1700 -3.4334 -3.1259 45 1 7.0316 -6.1729 -2.0453 46 1 7.9493 -5.0621 -3.1063 47 1 10.2255 -6.7603 -2.7085 48 1 6.3345 -5.4367 0.9785 49 1 7.5534 -4.2864 1.5778 50 1 4.5491 -3.8081 1.3501 51 1 5.4882 -3.9863 2.8516 52 1 5.7351 -2.5635 1.8109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692015970.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:49 Heat of formation + Delta-G solvation = -59.301510 kcal Electronic energy + Delta-G solvation = -31170.868139 eV Core-core repulsion = 27170.364514 eV Total energy + Delta-G solvation = -4000.503624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.65700 -40.28733 -38.94788 -37.39151 -35.58980 -34.97758 -34.27877 -33.50741 -31.91987 -30.77390 -29.35735 -28.16482 -27.94239 -26.51201 -25.24150 -23.61652 -22.40137 -21.92303 -21.46087 -20.60964 -19.26373 -18.78479 -18.41105 -17.95770 -17.34949 -16.79390 -16.43056 -16.03694 -15.98233 -15.66386 -15.45447 -15.30737 -15.15703 -14.85788 -14.56628 -14.33771 -14.29427 -13.89347 -13.78045 -13.55657 -13.28697 -13.25495 -13.12247 -12.92700 -12.86122 -12.68447 -12.58624 -12.51448 -12.42465 -12.22023 -12.07367 -12.01457 -11.90362 -11.87152 -11.55908 -11.37057 -11.06511 -10.67923 -10.55955 -10.07079 -9.93430 -9.70552 -8.85432 -7.83520 -5.22092 1.30355 1.47209 1.50447 1.56416 1.69510 1.85364 2.16899 2.47694 2.55415 3.34992 3.53693 3.75110 3.84408 3.87567 3.92451 4.07388 4.16001 4.18686 4.21082 4.25381 4.35388 4.40110 4.54477 4.59941 4.61681 4.65028 4.69493 4.74450 4.86078 4.87375 4.97044 5.00566 5.08977 5.10910 5.13355 5.15180 5.17695 5.26918 5.31056 5.45216 5.50283 5.51391 5.56563 5.68799 5.71891 5.79702 6.06577 6.23287 6.65622 6.70845 7.08989 7.35958 7.53795 7.77097 8.43839 9.26655 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002879 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.097890 B = 9722.597199 C =10431.404540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.117 4.117 3 C -0.119 4.119 4 C -0.095 4.095 5 C 0.148 3.852 6 H 0.147 0.853 7 N -0.707 5.707 8 C 0.506 3.494 9 C -0.165 4.165 10 O -0.570 6.570 11 C 0.496 3.504 12 O -0.559 6.559 13 N -0.702 5.702 14 C 0.161 3.839 15 H 0.062 0.938 16 C -0.138 4.138 17 C 0.181 3.819 18 N -0.613 5.613 19 C -0.232 4.232 20 H 0.085 0.915 21 C -0.065 4.065 22 N -0.952 5.952 23 Si 0.977 3.023 24 H -0.279 1.279 25 H -0.298 1.298 26 H -0.273 1.273 27 C 0.161 3.839 28 H 0.058 0.942 29 C -0.127 4.127 30 C -0.132 4.132 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.421 0.579 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.413 0.587 43 H 0.058 0.942 44 H 0.077 0.923 45 H -0.015 1.015 46 H 0.048 0.952 47 H 0.246 0.754 48 H 0.029 0.971 49 H 0.052 0.948 50 H 0.042 0.958 51 H 0.056 0.944 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.080 19.202 0.395 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.117 4.117 3 C -0.175 4.175 4 C -0.134 4.134 5 C 0.039 3.961 6 H 0.165 0.835 7 N -0.361 5.361 8 C 0.294 3.706 9 C -0.224 4.224 10 O -0.448 6.448 11 C 0.282 3.718 12 O -0.435 6.435 13 N -0.355 5.355 14 C 0.055 3.945 15 H 0.080 0.920 16 C -0.178 4.178 17 C 0.055 3.945 18 N -0.337 5.337 19 C -0.361 4.361 20 H 0.103 0.897 21 C -0.258 4.258 22 N -0.601 5.601 23 Si 0.805 3.195 24 H -0.205 1.205 25 H -0.225 1.225 26 H -0.198 1.198 27 C 0.054 3.946 28 H 0.076 0.924 29 C -0.166 4.166 30 C -0.190 4.190 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.259 0.741 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.250 0.750 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.003 0.997 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.048 0.952 49 H 0.070 0.930 50 H 0.061 0.939 51 H 0.075 0.925 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.084 17.851 0.855 26.884 hybrid contribution 1.286 -0.657 -0.123 1.449 sum -18.798 17.195 0.732 25.486 Atomic orbital electron populations 1.23675 0.95490 1.01467 1.02136 1.21636 0.95297 0.94922 0.99887 1.20902 1.00391 0.93348 1.02868 1.20966 1.01869 0.96074 0.94485 1.20802 0.86048 0.94254 0.95003 0.83502 1.45583 1.21172 1.37351 1.31980 1.21331 0.85840 0.78478 0.84926 1.21868 0.93824 1.05410 1.01320 1.90710 1.76196 1.48341 1.29555 1.21560 0.82297 0.91910 0.76052 1.90743 1.73214 1.30985 1.48595 1.45805 1.07841 1.10289 1.71567 1.21507 0.90021 0.87798 0.95170 0.91983 1.23190 0.97140 1.00657 0.96771 1.21167 0.91124 0.91931 0.90293 1.44690 1.02884 1.60847 1.25303 1.19315 0.83460 1.15721 1.17597 0.89707 1.25697 1.02634 0.97783 0.99687 1.70142 1.34622 1.26500 1.28790 0.85181 0.79696 0.77280 0.77348 1.20530 1.22487 1.19832 1.21237 0.86437 0.96254 0.90639 0.92398 1.21911 0.99034 0.98700 0.96987 1.21636 0.97227 1.00850 0.99302 0.90625 0.86898 0.90962 0.91273 0.90182 0.89167 0.91984 0.74142 0.88839 0.89474 0.86930 0.74972 0.92335 0.90442 0.99664 0.93362 0.94443 0.95246 0.92965 0.93879 0.92492 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.67 13.72 67.78 0.93 -1.74 16 2 C -0.12 -1.58 5.08 -16.49 -0.08 -1.67 16 3 C -0.12 -1.00 10.05 71.24 0.72 -0.29 16 4 C -0.10 -1.77 4.63 29.85 0.14 -1.63 16 5 C 0.15 2.68 3.00 44.25 0.13 2.81 16 6 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 7 N -0.71 -11.80 4.74 -446.09 -2.11 -13.91 16 8 C 0.51 11.76 6.40 87.66 0.56 12.32 16 9 C -0.16 -2.34 10.30 71.24 0.73 -1.61 16 10 O -0.57 -19.81 12.96 19.41 0.25 -19.56 16 11 C 0.50 14.08 6.81 87.66 0.60 14.68 16 12 O -0.56 -21.96 13.41 19.42 0.26 -21.70 16 13 N -0.70 -18.78 4.93 -436.92 -2.16 -20.94 16 14 C 0.16 5.90 1.92 46.18 0.09 5.99 16 15 H 0.06 2.67 7.34 -2.38 -0.02 2.65 16 16 C -0.14 -5.55 6.77 31.98 0.22 -5.33 16 17 C 0.18 9.24 5.46 86.85 0.47 9.72 16 18 N -0.61 -30.89 3.13 -668.24 -2.09 -32.98 16 19 C -0.23 -12.67 9.77 84.03 0.82 -11.85 16 20 H 0.09 4.37 7.83 -2.91 -0.02 4.34 16 21 C -0.07 -3.68 5.47 84.86 0.46 -3.21 16 22 N -0.95 -57.73 10.47 21.65 0.23 -57.50 16 23 Si 0.98 45.47 29.55 68.60 2.03 47.50 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 27 C 0.16 6.31 2.94 45.34 0.13 6.45 16 28 H 0.06 2.05 7.69 -2.39 -0.02 2.03 16 29 C -0.13 -4.79 5.41 30.60 0.17 -4.62 16 30 C -0.13 -3.81 9.57 71.98 0.69 -3.12 16 31 H 0.08 1.36 7.69 -2.91 -0.02 1.34 16 32 H 0.11 1.17 8.05 -2.91 -0.02 1.14 16 33 H 0.07 0.52 8.00 -2.39 -0.02 0.50 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.68 5.89 -2.38 -0.01 1.66 16 38 H 0.42 3.69 8.83 -92.71 -0.82 2.88 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.41 8.09 8.31 -92.70 -0.77 7.32 16 43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 45 H -0.01 -0.85 8.11 -2.39 -0.02 -0.87 16 46 H 0.05 2.74 6.73 -2.39 -0.02 2.73 16 47 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 48 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 49 H 0.05 2.08 7.91 -2.39 -0.02 2.06 16 50 H 0.04 1.31 7.38 -2.39 -0.02 1.29 16 51 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -81.64 413.52 2.50 -79.13 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.68 Total: 23.04 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 6.78 Total: 16.91 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -6.13 Total: -125.33 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: 0.51 Total: -41.26 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -81.64 2.50 -79.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692015970.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.833 kcal (2) G-P(sol) polarization free energy of solvation -81.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds