Wall clock time and date at job start Tue Mar 31 2020 20:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47478 * 2 1 4 4 H 1.09006 * 109.47167 * 58.60253 * 3 2 1 5 5 C 1.53007 * 109.47111 * 178.59722 * 3 2 1 6 6 N 1.46504 * 109.46958 * 175.00049 * 5 3 2 7 7 C 1.34777 * 119.99772 * 179.97438 * 6 5 3 8 8 O 1.21612 * 119.99968 * 0.02562 * 7 6 5 9 9 C 1.47096 * 119.99728 * 179.97438 * 7 6 5 10 10 C 1.32994 * 119.99824 * 186.59911 * 9 7 6 11 11 C 1.51269 * 120.84985 * 18.42977 * 10 9 7 12 12 C 1.53660 * 108.31089 * 128.62131 * 11 10 9 13 13 C 1.52956 * 109.32930 * 54.86027 * 12 11 10 14 14 C 1.52959 * 109.81438 * 296.27496 * 13 12 11 15 15 C 1.51273 * 120.85300 * 198.71241 * 10 9 7 16 16 N 1.46896 * 109.47439 * 298.59776 * 3 2 1 17 17 C 1.46901 * 110.99730 * 304.35795 * 16 3 2 18 18 C 1.50707 * 109.47071 * 185.63725 * 17 16 3 19 19 O 1.21294 * 119.99565 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00072 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00183 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99556 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00189 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00097 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99969 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47372 * 59.99607 * 25 23 21 27 27 H 1.48503 * 109.47452 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47028 * 299.99623 * 25 23 21 29 29 H 1.09002 * 109.46871 * 305.17076 * 1 2 3 30 30 H 1.09003 * 109.46873 * 65.16611 * 1 2 3 31 31 H 1.08990 * 109.47551 * 185.16519 * 1 2 3 32 32 H 1.09005 * 109.47190 * 239.99614 * 2 1 3 33 33 H 1.09002 * 109.46735 * 120.00178 * 2 1 3 34 34 H 1.09000 * 109.46771 * 54.99953 * 5 3 2 35 35 H 1.09001 * 109.47155 * 295.00333 * 5 3 2 36 36 H 0.97000 * 120.00214 * 0.02562 * 6 5 3 37 37 H 1.08000 * 120.00378 * 6.33144 * 9 7 6 38 38 H 1.09003 * 109.62598 * 248.39120 * 11 10 9 39 39 H 1.09000 * 109.62679 * 8.95549 * 11 10 9 40 40 H 1.09004 * 109.62374 * 294.83729 * 12 11 10 41 41 H 1.09004 * 109.42994 * 174.76083 * 12 11 10 42 42 H 1.08993 * 109.41669 * 176.17148 * 13 12 11 43 43 H 1.08993 * 109.41377 * 56.37752 * 13 12 11 44 44 H 1.09004 * 109.48372 * 303.61752 * 14 13 12 45 45 H 1.09004 * 109.48426 * 183.57640 * 14 13 12 46 46 H 1.08997 * 109.62212 * 351.03782 * 15 10 9 47 47 H 1.08997 * 109.62876 * 111.60897 * 15 10 9 48 48 H 1.00900 * 110.99740 * 68.30948 * 16 3 2 49 49 H 1.08994 * 109.47485 * 305.64049 * 17 16 3 50 50 H 1.09004 * 109.46840 * 65.64632 * 17 16 3 51 51 H 0.97005 * 120.00270 * 0.02562 * 20 18 17 52 52 H 0.97003 * 119.99885 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6564 1.9635 0.8772 5 6 3.5697 1.4425 0.0353 6 7 4.0609 2.8175 -0.0850 7 6 5.3861 3.0627 -0.0773 8 8 6.1742 2.1426 0.0290 9 6 5.8793 4.4432 -0.1987 10 6 7.1829 4.6750 -0.3233 11 6 8.1287 3.5757 -0.7536 12 6 8.9739 4.0974 -1.9260 13 6 9.6660 5.3972 -1.5122 14 6 8.6182 6.4740 -1.2255 15 6 7.7589 6.0432 -0.0321 16 7 1.5783 2.1251 -1.2160 17 6 1.9904 1.3916 -2.4202 18 6 1.6217 2.1889 -3.6448 19 8 1.0705 3.2628 -3.5259 20 7 1.9055 1.7091 -4.8718 21 6 1.5707 2.4347 -5.9859 22 1 1.0791 3.3905 -5.8801 23 6 1.8627 1.9398 -7.2509 24 7 2.4604 0.7766 -7.3796 25 14 1.4059 2.9281 -8.7688 26 1 2.0955 4.2427 -8.7297 27 1 1.8229 2.1869 -9.9862 28 1 -0.0636 3.1407 -8.7972 29 1 -0.3633 0.5920 0.8401 30 1 -0.3633 0.4316 -0.9327 31 1 -0.3634 -1.0234 0.0925 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.9522 0.8462 -0.7931 35 1 3.9114 1.0157 0.9783 36 1 3.4323 3.5514 -0.1694 37 1 5.1824 5.2683 -0.1910 38 1 8.7789 3.3056 0.0785 39 1 7.5565 2.7044 -1.0724 40 1 8.3307 4.2857 -2.7857 41 1 9.7255 3.3536 -2.1905 42 1 10.3188 5.7325 -2.3180 43 1 10.2599 5.2217 -0.6154 44 1 7.9834 6.6061 -2.1017 45 1 9.1176 7.4146 -0.9930 46 1 6.9489 6.7581 0.1127 47 1 8.3755 5.9975 0.8655 48 1 0.5783 2.2584 -1.1982 49 1 3.0688 1.2354 -2.3993 50 1 1.4839 0.4267 -2.4489 51 1 2.3467 0.8505 -4.9668 52 1 2.6646 0.4314 -8.2628 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698595824.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:28 Heat of formation + Delta-G solvation = -78.154408 kcal Electronic energy + Delta-G solvation = -29700.481199 eV Core-core repulsion = 25699.160051 eV Total energy + Delta-G solvation = -4001.321147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.94772 -38.81577 -37.97823 -37.17039 -34.07699 -33.82970 -32.73768 -31.71347 -31.14989 -31.07485 -29.03868 -27.05081 -26.21686 -24.24647 -23.47385 -23.01922 -21.50327 -20.48737 -20.14231 -19.16637 -18.46013 -17.88432 -16.82778 -16.72072 -16.04315 -15.52710 -15.20352 -14.94732 -14.81892 -14.46745 -14.30211 -14.20744 -14.08965 -13.89257 -13.57104 -13.53099 -13.45332 -13.03544 -12.71359 -12.50371 -12.41593 -12.25818 -12.02197 -11.85625 -11.75546 -11.49300 -11.32764 -11.23019 -11.05550 -10.98496 -10.89488 -10.76344 -10.69985 -10.43656 -10.41610 -10.20030 -9.48357 -9.46478 -8.95813 -8.70873 -8.48697 -8.06222 -7.94402 -6.40002 -3.80963 1.36111 3.20600 3.26301 3.30376 3.37586 3.45797 3.92957 4.11354 4.35035 4.57823 4.58790 4.66787 4.77254 4.85698 4.92892 4.99612 5.05230 5.17976 5.20790 5.26635 5.27877 5.30950 5.34251 5.44997 5.46442 5.51069 5.60541 5.64559 5.70467 5.76968 5.81003 5.83826 5.87898 5.88595 5.94100 5.97104 6.01840 6.10478 6.18178 6.20228 6.25027 6.28453 6.49777 6.59506 6.71020 7.16402 7.56074 7.59081 7.79311 8.07487 8.45990 8.62964 9.19378 9.56289 10.07807 10.77670 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007114 B = 0.003367 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3934.791162 B = 8313.552725 C =11317.609412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.160 4.160 3 C 0.074 3.926 4 H 0.088 0.912 5 C 0.128 3.872 6 N -0.709 5.709 7 C 0.546 3.454 8 O -0.552 6.552 9 C -0.229 4.229 10 C -0.024 4.024 11 C -0.105 4.105 12 C -0.120 4.120 13 C -0.122 4.122 14 C -0.119 4.119 15 C -0.092 4.092 16 N -0.658 5.658 17 C 0.045 3.955 18 C 0.442 3.558 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.411 0.589 37 H 0.127 0.873 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.352 0.648 49 H 0.086 0.914 50 H 0.048 0.952 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.111 3.461 16.975 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.199 4.199 3 C -0.037 4.037 4 H 0.106 0.894 5 C 0.004 3.996 6 N -0.360 5.360 7 C 0.336 3.664 8 O -0.433 6.433 9 C -0.250 4.250 10 C -0.026 4.026 11 C -0.142 4.142 12 C -0.157 4.157 13 C -0.160 4.160 14 C -0.157 4.157 15 C -0.129 4.129 16 N -0.290 5.290 17 C -0.088 4.088 18 C 0.228 3.772 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.246 0.754 37 H 0.145 0.855 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.172 0.828 49 H 0.104 0.896 50 H 0.065 0.935 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.847 3.865 16.913 19.474 hybrid contribution -0.946 -0.531 -0.980 1.462 sum 7.901 3.334 15.932 18.094 Atomic orbital electron populations 1.21763 0.95304 1.01943 1.02105 1.22202 0.96719 0.98000 1.03020 1.21920 0.94155 0.93277 0.94384 0.89362 1.21356 0.92750 0.83878 1.01658 1.45727 1.06905 1.09686 1.73636 1.18542 0.82171 0.89248 0.76475 1.90673 1.55120 1.46507 1.51037 1.22331 0.96082 0.95908 1.10671 1.22663 0.94090 0.96346 0.89528 1.21383 0.97334 0.97726 0.97761 1.21699 0.98935 0.96851 0.98232 1.21548 0.97709 0.95408 1.01286 1.21598 0.97577 0.98299 0.98196 1.20965 0.99721 0.93436 0.98744 1.60165 1.20450 1.48828 0.99603 1.21750 1.01471 0.95264 0.90291 1.19804 0.85272 0.88046 0.84090 1.90512 1.46958 1.23104 1.86198 1.41857 1.53002 1.20805 1.04405 1.19638 1.36366 1.03653 0.83281 0.88031 1.25246 0.97025 0.96408 0.99191 1.69606 1.41575 1.18216 1.24889 0.85938 0.79004 0.79330 0.80057 1.19909 1.20976 1.19936 0.92544 0.92418 0.92492 0.91031 0.91380 0.91525 0.91486 0.75351 0.85470 0.90859 0.87443 0.91702 0.91547 0.91983 0.91998 0.91491 0.91683 0.90785 0.89862 0.82816 0.89596 0.93455 0.77542 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.48 37.16 0.35 -1.15 16 2 C -0.16 -1.61 4.98 -26.74 -0.13 -1.74 16 3 C 0.07 0.82 2.73 -67.71 -0.18 0.63 16 4 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 5 C 0.13 1.59 4.80 -4.04 -0.02 1.57 16 6 N -0.71 -9.37 5.38 -61.49 -0.33 -9.70 16 7 C 0.55 8.00 7.54 -12.67 -0.10 7.90 16 8 O -0.55 -9.44 13.51 5.27 0.07 -9.37 16 9 C -0.23 -2.87 9.62 -37.81 -0.36 -3.23 16 10 C -0.02 -0.28 5.34 -100.61 -0.54 -0.82 16 11 C -0.11 -1.30 5.17 -27.26 -0.14 -1.44 16 12 C -0.12 -1.28 5.95 -26.41 -0.16 -1.44 16 13 C -0.12 -1.07 5.81 -26.77 -0.16 -1.23 16 14 C -0.12 -1.02 5.94 -26.63 -0.16 -1.18 16 15 C -0.09 -0.81 6.04 -27.48 -0.17 -0.98 16 16 N -0.66 -9.53 5.25 -107.99 -0.57 -10.10 16 17 C 0.04 0.77 5.28 -4.97 -0.03 0.74 16 18 C 0.44 10.31 7.83 -10.99 -0.09 10.22 16 19 O -0.58 -15.50 15.90 5.55 0.09 -15.41 16 20 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 21 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 22 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 25 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.65 7.14 -51.93 -0.37 0.28 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.80 6.39 -51.93 -0.33 0.47 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.94 6.64 -51.93 -0.34 0.60 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.41 5.18 8.12 -40.82 -0.33 4.85 16 37 H 0.13 1.36 8.00 -52.49 -0.42 0.94 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.11 1.64 5.27 -51.93 -0.27 1.37 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.59 7.95 -51.93 -0.41 0.18 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.35 5.21 7.42 -39.29 -0.29 4.92 16 49 H 0.09 1.47 6.27 -51.93 -0.33 1.15 16 50 H 0.05 0.74 6.50 -51.93 -0.34 0.41 16 51 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 52 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 409.85 15.07 6.18 6.18 Total: -1.00 -31.93 409.85 -9.80 -41.73 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -8.77 Total: 19.10 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.11 Total: -0.16 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.23 Total: -58.21 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: 0.16 Total: -24.78 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.93 -9.80 -41.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698595824.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.421 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds