Wall clock time and date at job start Tue Mar 31 2020 20:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46909 * 2 1 4 4 H 1.08998 * 109.46894 * 305.91780 * 3 2 1 5 5 C 1.53000 * 109.46928 * 185.91489 * 3 2 1 6 6 N 1.46496 * 109.46702 * 185.00474 * 5 3 2 7 7 C 1.34781 * 119.99691 * 179.97438 * 6 5 3 8 8 O 1.21611 * 119.99809 * 359.97438 * 7 6 5 9 9 C 1.47098 * 120.00051 * 179.97438 * 7 6 5 10 10 C 1.32994 * 120.00139 * 186.38651 * 9 7 6 11 11 C 1.51259 * 120.85024 * 16.98790 * 10 9 7 12 12 C 1.53670 * 108.31167 * 128.61735 * 11 10 9 13 13 C 1.52957 * 109.32181 * 54.86408 * 12 11 10 14 14 C 1.52963 * 109.81491 * 296.27240 * 13 12 11 15 15 C 1.51270 * 120.84766 * 197.26882 * 10 9 7 16 16 N 1.46908 * 109.46795 * 65.91477 * 3 2 1 17 17 C 1.46899 * 110.99798 * 64.05586 * 16 3 2 18 18 C 1.50702 * 109.46799 * 184.13665 * 17 16 3 19 19 O 1.21285 * 120.00017 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99585 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99695 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99759 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00037 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99938 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00120 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47516 * 59.99654 * 25 23 21 27 27 H 1.48507 * 109.47236 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46998 * 299.99614 * 25 23 21 29 29 H 1.08997 * 109.47006 * 183.95072 * 1 2 3 30 30 H 1.09004 * 109.47298 * 303.95096 * 1 2 3 31 31 H 1.09005 * 109.47447 * 63.94624 * 1 2 3 32 32 H 1.09000 * 109.47295 * 240.00797 * 2 1 3 33 33 H 1.08991 * 109.47096 * 119.99819 * 2 1 3 34 34 H 1.08993 * 109.47253 * 65.00257 * 5 3 2 35 35 H 1.09001 * 109.47051 * 304.99935 * 5 3 2 36 36 H 0.97001 * 120.00408 * 359.97438 * 6 5 3 37 37 H 1.08008 * 119.99972 * 6.39576 * 9 7 6 38 38 H 1.08998 * 109.63043 * 248.39246 * 11 10 9 39 39 H 1.09002 * 109.62678 * 8.95950 * 11 10 9 40 40 H 1.08999 * 109.62511 * 294.84086 * 12 11 10 41 41 H 1.08996 * 109.42780 * 174.76264 * 12 11 10 42 42 H 1.08998 * 109.41213 * 176.16662 * 13 12 11 43 43 H 1.08995 * 109.41548 * 56.37891 * 13 12 11 44 44 H 1.09006 * 109.48257 * 303.62145 * 14 13 12 45 45 H 1.09003 * 109.48007 * 183.58165 * 14 13 12 46 46 H 1.08994 * 109.63060 * 351.04195 * 15 10 9 47 47 H 1.09007 * 109.62542 * 111.61170 * 15 10 9 48 48 H 1.00896 * 110.99612 * 300.10400 * 16 3 2 49 49 H 1.08994 * 109.47793 * 304.14063 * 17 16 3 50 50 H 1.09010 * 109.46987 * 64.14091 * 17 16 3 51 51 H 0.96994 * 120.00367 * 359.97438 * 20 18 17 52 52 H 0.97004 * 120.00154 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5927 1.9861 -0.8323 5 6 3.5627 1.4452 -0.1487 6 7 4.0626 2.8170 -0.0290 7 6 5.3840 3.0636 -0.1274 8 8 6.1613 2.1473 -0.3151 9 6 5.8860 4.4411 -0.0078 10 6 7.1709 4.7024 -0.2306 11 6 8.0479 3.7121 -0.9642 12 6 8.7650 4.4536 -2.1032 13 6 9.5165 5.6562 -1.5300 14 6 8.5218 6.6509 -0.9292 15 6 7.7941 5.9947 0.2488 16 7 1.6702 2.0926 1.2645 17 6 2.3337 1.4441 2.4034 18 6 1.8535 2.0701 3.6874 19 8 1.0384 2.9677 3.6568 20 7 2.3299 1.6324 4.8698 21 6 1.8926 2.2014 6.0380 22 1 1.1667 3.0007 6.0106 23 6 2.3832 1.7499 7.2570 24 7 3.2660 0.7770 7.2902 25 14 1.7869 2.5247 8.8486 26 1 0.3172 2.3471 8.9655 27 1 2.4574 1.8689 10.0001 28 1 2.1118 3.9737 8.8458 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3634 0.5739 0.8525 31 1 -0.3634 0.4514 -0.9233 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8331 1.0438 -1.1252 35 1 4.0051 0.8278 0.6331 36 1 3.4427 3.5478 0.1211 37 1 5.2112 5.2404 0.2611 38 1 8.7825 3.2937 -0.2762 39 1 7.4320 2.9130 -1.3767 40 1 8.0332 4.7969 -2.8344 41 1 9.4724 3.7793 -2.5859 42 1 10.0807 6.1434 -2.3252 43 1 10.2037 5.3180 -0.7545 44 1 7.7957 6.9423 -1.6883 45 1 9.0569 7.5339 -0.5798 46 1 7.0151 6.6627 0.6160 47 1 8.5058 5.7839 1.0472 48 1 0.6687 2.1020 1.3869 49 1 2.0947 0.3807 2.4060 50 1 3.4127 1.5738 2.3173 51 1 2.9814 0.9143 4.8944 52 1 3.6083 0.4615 8.1413 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698595825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:31 Heat of formation + Delta-G solvation = -77.826426 kcal Electronic energy + Delta-G solvation = -29497.726292 eV Core-core repulsion = 25496.419367 eV Total energy + Delta-G solvation = -4001.306925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.01006 -38.84699 -38.02392 -37.17592 -34.09306 -33.84464 -32.79049 -31.80702 -31.17441 -31.13792 -28.98938 -27.06622 -26.23444 -24.26694 -23.47327 -23.08085 -21.56525 -20.52458 -20.17673 -19.22695 -18.49647 -17.90982 -16.82893 -16.74878 -16.07193 -15.44757 -15.20524 -15.06980 -14.80159 -14.52417 -14.42799 -14.23315 -14.05263 -13.90426 -13.63697 -13.58997 -13.40134 -13.08947 -12.73335 -12.60562 -12.42867 -12.27986 -12.04838 -11.93349 -11.76584 -11.50572 -11.31424 -11.29093 -11.08279 -11.04964 -10.84590 -10.82486 -10.74543 -10.48529 -10.44659 -10.21472 -9.50405 -9.46449 -9.01381 -8.75326 -8.46579 -8.11946 -7.96437 -6.41491 -3.82638 1.33725 3.19642 3.25556 3.29455 3.31756 3.43322 3.90159 4.11547 4.36275 4.52405 4.54232 4.65037 4.69980 4.82013 4.90844 4.98180 5.00563 5.14690 5.15912 5.22160 5.25360 5.29630 5.31156 5.39343 5.43961 5.45389 5.58965 5.64318 5.68146 5.76022 5.79844 5.79958 5.82011 5.85812 5.90769 5.91440 6.01395 6.08034 6.12186 6.16936 6.23335 6.28093 6.46181 6.54322 6.66793 7.16713 7.54671 7.61214 7.74763 8.05557 8.41817 8.60543 9.17254 9.54048 10.04953 10.76079 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008605 B = 0.002806 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.194268 B = 9975.652706 C =12411.574776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 C 0.073 3.927 4 H 0.089 0.911 5 C 0.126 3.874 6 N -0.711 5.711 7 C 0.546 3.454 8 O -0.550 6.550 9 C -0.229 4.229 10 C -0.024 4.024 11 C -0.110 4.110 12 C -0.117 4.117 13 C -0.124 4.124 14 C -0.117 4.117 15 C -0.094 4.094 16 N -0.660 5.660 17 C 0.043 3.957 18 C 0.440 3.560 19 O -0.586 6.586 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.411 0.589 37 H 0.127 0.873 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.354 0.646 49 H 0.048 0.952 50 H 0.087 0.913 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 4.355 -19.502 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.108 0.892 5 C 0.001 3.999 6 N -0.361 5.361 7 C 0.336 3.664 8 O -0.432 6.432 9 C -0.249 4.249 10 C -0.026 4.026 11 C -0.147 4.147 12 C -0.154 4.154 13 C -0.161 4.161 14 C -0.154 4.154 15 C -0.131 4.131 16 N -0.294 5.294 17 C -0.089 4.089 18 C 0.226 3.774 19 O -0.471 6.471 20 N -0.198 5.198 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.247 0.753 37 H 0.145 0.855 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.176 0.824 49 H 0.065 0.935 50 H 0.105 0.895 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.762 4.714 -19.524 21.532 hybrid contribution -0.713 -0.607 1.184 1.510 sum 7.050 4.107 -18.340 20.072 Atomic orbital electron populations 1.21760 0.95253 1.01990 1.02025 1.22203 0.96806 0.98041 1.02984 1.21934 0.94377 0.93505 0.93973 0.89247 1.21389 0.92816 0.83971 1.01677 1.45764 1.07437 1.10087 1.72852 1.18535 0.82041 0.89405 0.76389 1.90661 1.55593 1.46709 1.50196 1.22342 0.96503 0.95866 1.10226 1.22654 0.93725 0.95761 0.90478 1.21456 0.98897 0.97606 0.96694 1.21679 0.99107 0.96908 0.97728 1.21564 0.97935 0.96288 1.00318 1.21580 0.98341 0.98045 0.97484 1.20986 1.00148 0.93948 0.98030 1.60349 1.15053 1.54170 0.99813 1.21777 1.00156 0.96350 0.90645 1.19806 0.86189 0.86851 0.84581 1.90511 1.36926 1.32766 1.86912 1.41858 1.39272 1.33992 1.04695 1.19641 1.23277 1.17450 0.82629 0.87991 1.25267 0.96463 0.96564 0.99615 1.69608 1.29870 1.27195 1.27520 0.85922 0.78824 0.79136 0.80358 1.19925 1.20965 1.19868 0.92529 0.92326 0.92593 0.91329 0.91100 0.91412 0.91393 0.75320 0.85510 0.90651 0.87178 0.92107 0.91674 0.92085 0.91816 0.91781 0.91627 0.90629 0.89628 0.82415 0.93452 0.89507 0.77478 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.78 37.16 0.36 -1.17 16 2 C -0.16 -1.66 5.30 -26.73 -0.14 -1.80 16 3 C 0.07 0.82 2.71 -67.70 -0.18 0.64 16 4 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 5 C 0.13 1.54 4.51 -4.04 -0.02 1.52 16 6 N -0.71 -9.10 5.38 -61.50 -0.33 -9.43 16 7 C 0.55 7.77 7.57 -12.66 -0.10 7.67 16 8 O -0.55 -9.19 13.42 5.27 0.07 -9.12 16 9 C -0.23 -2.77 9.63 -37.81 -0.36 -3.14 16 10 C -0.02 -0.27 5.35 -100.61 -0.54 -0.81 16 11 C -0.11 -1.24 5.20 -27.26 -0.14 -1.38 16 12 C -0.12 -1.02 5.95 -26.40 -0.16 -1.18 16 13 C -0.12 -0.94 5.81 -26.77 -0.16 -1.09 16 14 C -0.12 -0.88 5.94 -26.63 -0.16 -1.04 16 15 C -0.09 -0.84 6.04 -27.49 -0.17 -1.00 16 16 N -0.66 -9.70 5.59 -107.98 -0.60 -10.30 16 17 C 0.04 0.75 5.34 -4.98 -0.03 0.72 16 18 C 0.44 10.28 7.81 -10.98 -0.09 10.19 16 19 O -0.59 -15.54 15.68 5.55 0.09 -15.45 16 20 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 21 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 25 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.67 6.62 -51.93 -0.34 0.33 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.82 6.15 -51.93 -0.32 0.50 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.94 6.74 -51.93 -0.35 0.59 16 36 H 0.41 5.00 8.12 -40.82 -0.33 4.67 16 37 H 0.13 1.33 7.99 -52.48 -0.42 0.91 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.11 1.49 5.14 -51.93 -0.27 1.22 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.63 7.94 -51.93 -0.41 0.22 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.35 5.50 6.62 -39.29 -0.26 5.24 16 49 H 0.05 0.76 6.10 -51.93 -0.32 0.45 16 50 H 0.09 1.52 6.60 -51.92 -0.34 1.17 16 51 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 52 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 408.64 15.07 6.16 6.16 Total: -1.00 -31.66 408.64 -9.78 -41.44 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -8.69 Total: 18.89 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.11 Total: 0.11 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.27 Total: -58.15 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: 0.16 Total: -24.57 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.66 -9.78 -41.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698595825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.385 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds