Wall clock time and date at job start Tue Mar 31 2020 20:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46909 * 2 1 4 4 H 1.08998 * 109.46894 * 305.91780 * 3 2 1 5 5 C 1.53000 * 109.46928 * 185.91489 * 3 2 1 6 6 N 1.46496 * 109.46702 * 185.00474 * 5 3 2 7 7 C 1.34781 * 119.99691 * 179.97438 * 6 5 3 8 8 O 1.21611 * 119.99809 * 359.97438 * 7 6 5 9 9 C 1.47098 * 120.00051 * 179.97438 * 7 6 5 10 10 C 1.32994 * 120.00139 * 186.38651 * 9 7 6 11 11 C 1.51259 * 120.85024 * 16.98790 * 10 9 7 12 12 C 1.53670 * 108.31167 * 128.61735 * 11 10 9 13 13 C 1.52957 * 109.32181 * 54.86408 * 12 11 10 14 14 C 1.52963 * 109.81491 * 296.27240 * 13 12 11 15 15 C 1.51270 * 120.84766 * 197.26882 * 10 9 7 16 16 N 1.46908 * 109.46795 * 65.91477 * 3 2 1 17 17 C 1.46899 * 110.99798 * 64.05586 * 16 3 2 18 18 C 1.50702 * 109.46799 * 184.13665 * 17 16 3 19 19 O 1.21285 * 120.00017 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99585 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99695 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99759 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00037 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99938 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00120 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47516 * 59.99654 * 25 23 21 27 27 H 1.48507 * 109.47236 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46998 * 299.99614 * 25 23 21 29 29 H 1.08997 * 109.47006 * 183.95072 * 1 2 3 30 30 H 1.09004 * 109.47298 * 303.95096 * 1 2 3 31 31 H 1.09005 * 109.47447 * 63.94624 * 1 2 3 32 32 H 1.09000 * 109.47295 * 240.00797 * 2 1 3 33 33 H 1.08991 * 109.47096 * 119.99819 * 2 1 3 34 34 H 1.08993 * 109.47253 * 65.00257 * 5 3 2 35 35 H 1.09001 * 109.47051 * 304.99935 * 5 3 2 36 36 H 0.97001 * 120.00408 * 359.97438 * 6 5 3 37 37 H 1.08008 * 119.99972 * 6.39576 * 9 7 6 38 38 H 1.08998 * 109.63043 * 248.39246 * 11 10 9 39 39 H 1.09002 * 109.62678 * 8.95950 * 11 10 9 40 40 H 1.08999 * 109.62511 * 294.84086 * 12 11 10 41 41 H 1.08996 * 109.42780 * 174.76264 * 12 11 10 42 42 H 1.08998 * 109.41213 * 176.16662 * 13 12 11 43 43 H 1.08995 * 109.41548 * 56.37891 * 13 12 11 44 44 H 1.09006 * 109.48257 * 303.62145 * 14 13 12 45 45 H 1.09003 * 109.48007 * 183.58165 * 14 13 12 46 46 H 1.08994 * 109.63060 * 351.04195 * 15 10 9 47 47 H 1.09007 * 109.62542 * 111.61170 * 15 10 9 48 48 H 1.00896 * 110.99612 * 300.10400 * 16 3 2 49 49 H 1.08994 * 109.47793 * 304.14063 * 17 16 3 50 50 H 1.09010 * 109.46987 * 64.14091 * 17 16 3 51 51 H 0.96994 * 120.00367 * 359.97438 * 20 18 17 52 52 H 0.97004 * 120.00154 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5927 1.9861 -0.8323 5 6 3.5627 1.4452 -0.1487 6 7 4.0626 2.8170 -0.0290 7 6 5.3840 3.0636 -0.1274 8 8 6.1613 2.1473 -0.3151 9 6 5.8860 4.4411 -0.0078 10 6 7.1709 4.7024 -0.2306 11 6 8.0479 3.7121 -0.9642 12 6 8.7650 4.4536 -2.1032 13 6 9.5165 5.6562 -1.5300 14 6 8.5218 6.6509 -0.9292 15 6 7.7941 5.9947 0.2488 16 7 1.6702 2.0926 1.2645 17 6 2.3337 1.4441 2.4034 18 6 1.8535 2.0701 3.6874 19 8 1.0384 2.9677 3.6568 20 7 2.3299 1.6324 4.8698 21 6 1.8926 2.2014 6.0380 22 1 1.1667 3.0007 6.0106 23 6 2.3832 1.7499 7.2570 24 7 3.2660 0.7770 7.2902 25 14 1.7869 2.5247 8.8486 26 1 0.3172 2.3471 8.9655 27 1 2.4574 1.8689 10.0001 28 1 2.1118 3.9737 8.8458 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3634 0.5739 0.8525 31 1 -0.3634 0.4514 -0.9233 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8331 1.0438 -1.1252 35 1 4.0051 0.8278 0.6331 36 1 3.4427 3.5478 0.1211 37 1 5.2112 5.2404 0.2611 38 1 8.7825 3.2937 -0.2762 39 1 7.4320 2.9130 -1.3767 40 1 8.0332 4.7969 -2.8344 41 1 9.4724 3.7793 -2.5859 42 1 10.0807 6.1434 -2.3252 43 1 10.2037 5.3180 -0.7545 44 1 7.7957 6.9423 -1.6883 45 1 9.0569 7.5339 -0.5798 46 1 7.0151 6.6627 0.6160 47 1 8.5058 5.7839 1.0472 48 1 0.6687 2.1020 1.3869 49 1 2.0947 0.3807 2.4060 50 1 3.4127 1.5738 2.3173 51 1 2.9814 0.9143 4.8944 52 1 3.6083 0.4615 8.1413 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698595825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:30 Heat of formation + Delta-G solvation = -99.346987 kcal Electronic energy + Delta-G solvation = -29498.659494 eV Core-core repulsion = 25496.419367 eV Total energy + Delta-G solvation = -4002.240127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.07879 -40.32204 -39.13149 -38.39740 -35.98697 -35.05463 -33.61863 -33.34266 -32.83257 -31.87580 -30.02261 -28.38301 -27.37830 -26.04258 -24.38297 -23.81561 -22.38492 -21.76872 -21.22948 -20.66733 -19.94055 -19.38536 -18.35016 -17.79879 -17.10805 -16.89345 -16.52823 -16.29234 -15.97135 -15.83598 -15.69795 -15.40510 -15.17280 -15.09937 -14.75856 -14.49637 -14.48239 -14.15010 -13.96230 -13.60324 -13.55910 -13.49698 -13.27965 -13.20460 -12.91836 -12.80379 -12.71366 -12.44486 -12.26733 -12.13942 -12.02911 -11.84385 -11.75435 -11.69124 -11.58591 -11.50580 -11.18306 -10.51248 -10.36453 -10.03612 -10.01379 -9.72093 -9.36644 -8.47612 -5.96922 0.38718 1.38795 1.40524 1.51842 2.02878 2.25939 2.29640 2.41248 2.95468 3.19479 3.50002 3.71103 3.75445 3.79491 4.00703 4.06113 4.07802 4.14276 4.22345 4.26789 4.34301 4.35508 4.44960 4.48190 4.50401 4.53719 4.56315 4.64526 4.73949 4.78772 4.80529 4.93234 5.01121 5.03393 5.09959 5.15135 5.18333 5.19111 5.25567 5.32531 5.36524 5.39159 5.44827 5.55317 5.63451 5.71536 5.86738 6.06795 6.38610 6.57183 6.69953 7.10402 7.35278 7.53803 8.07922 8.69704 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008605 B = 0.002806 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.194268 B = 9975.652706 C =12411.574776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.157 4.157 3 C 0.083 3.917 4 H 0.112 0.888 5 C 0.126 3.874 6 N -0.706 5.706 7 C 0.538 3.462 8 O -0.582 6.582 9 C -0.248 4.248 10 C -0.018 4.018 11 C -0.111 4.111 12 C -0.112 4.112 13 C -0.122 4.122 14 C -0.114 4.114 15 C -0.095 4.095 16 N -0.664 5.664 17 C 0.063 3.937 18 C 0.439 3.561 19 O -0.619 6.619 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.082 0.918 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.271 1.271 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.414 0.586 37 H 0.142 0.858 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.352 0.648 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.394 0.606 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.530 5.134 -20.393 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C -0.027 4.027 4 H 0.130 0.870 5 C 0.002 3.998 6 N -0.356 5.356 7 C 0.330 3.670 8 O -0.466 6.466 9 C -0.269 4.269 10 C -0.020 4.020 11 C -0.148 4.148 12 C -0.150 4.150 13 C -0.160 4.160 14 C -0.151 4.151 15 C -0.132 4.132 16 N -0.298 5.298 17 C -0.069 4.069 18 C 0.227 3.773 19 O -0.505 6.505 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.100 0.900 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.251 0.749 37 H 0.159 0.841 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.107 0.893 48 H 0.173 0.827 49 H 0.082 0.918 50 H 0.106 0.894 51 H 0.227 0.773 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.049 5.484 -20.437 22.639 hybrid contribution -0.789 -0.871 1.370 1.805 sum 7.260 4.613 -19.067 20.917 Atomic orbital electron populations 1.21748 0.94824 1.02222 1.02043 1.22165 0.97061 0.97072 1.03314 1.21980 0.93701 0.94396 0.92634 0.87028 1.21423 0.93253 0.83494 1.01628 1.45780 1.07179 1.10445 1.72245 1.18936 0.82192 0.90014 0.75899 1.90650 1.56331 1.47791 1.51849 1.22428 0.97342 0.95233 1.11909 1.22971 0.93437 0.96600 0.89033 1.21398 0.98577 0.97456 0.97393 1.21654 0.99156 0.97424 0.96735 1.21570 0.97882 0.95723 1.00796 1.21583 0.98322 0.98388 0.96819 1.21064 1.00475 0.92911 0.98735 1.60333 1.14651 1.54717 1.00091 1.21524 1.00027 0.96788 0.88553 1.20795 0.84847 0.85923 0.85760 1.90480 1.38186 1.34159 1.87687 1.41953 1.39780 1.34348 1.05003 1.19645 1.24193 1.18128 0.84289 0.90048 1.26081 0.96242 0.96784 1.02315 1.69681 1.30295 1.27797 1.28564 0.84977 0.78478 0.78308 0.76520 1.19497 1.19623 1.19591 0.91965 0.94132 0.90995 0.89282 0.92480 0.90279 0.93225 0.74913 0.84058 0.91470 0.89573 0.92023 0.91020 0.90462 0.91846 0.91587 0.89965 0.89879 0.89338 0.82715 0.91787 0.89404 0.77311 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.78 71.98 0.70 -2.04 16 2 C -0.16 -2.94 5.30 30.60 0.16 -2.78 16 3 C 0.08 1.73 2.71 44.92 0.12 1.85 16 4 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 5 C 0.13 2.99 4.51 86.38 0.39 3.38 16 6 N -0.71 -17.87 5.38 -466.73 -2.51 -20.39 16 7 C 0.54 15.52 7.57 86.57 0.65 16.17 16 8 O -0.58 -20.03 13.42 -4.07 -0.05 -20.09 16 9 C -0.25 -6.01 9.63 23.43 0.23 -5.78 16 10 C -0.02 -0.40 5.35 -17.26 -0.09 -0.50 16 11 C -0.11 -2.54 5.20 30.25 0.16 -2.38 16 12 C -0.11 -1.86 5.95 30.81 0.18 -1.68 16 13 C -0.12 -1.61 5.81 30.57 0.18 -1.43 16 14 C -0.11 -1.46 5.94 30.66 0.18 -1.28 16 15 C -0.09 -1.56 6.04 30.11 0.18 -1.38 16 16 N -0.66 -19.04 5.59 -495.54 -2.77 -21.81 16 17 C 0.06 2.20 5.34 85.56 0.46 2.66 16 18 C 0.44 20.88 7.81 87.66 0.68 21.56 16 19 O -0.62 -33.43 15.68 -3.05 -0.05 -33.48 16 20 N -0.57 -29.97 5.29 -306.98 -1.62 -31.59 16 21 C -0.33 -19.05 9.68 84.04 0.81 -18.23 16 22 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 23 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.92 -50.81 13.05 21.66 0.28 -50.53 16 25 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.04 0.89 6.62 -2.39 -0.02 0.87 16 31 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.24 6.15 -2.39 -0.01 1.23 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.37 6.74 -2.39 -0.02 1.36 16 36 H 0.41 9.84 8.12 -92.71 -0.75 9.09 16 37 H 0.14 2.89 7.99 -2.91 -0.02 2.87 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 2.42 5.14 -2.39 -0.01 2.41 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 1.25 7.94 -2.39 -0.02 1.23 16 47 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 48 H 0.35 10.71 6.62 -89.70 -0.59 10.11 16 49 H 0.06 2.03 6.10 -2.39 -0.01 2.02 16 50 H 0.09 3.08 6.60 -2.38 -0.02 3.07 16 51 H 0.39 19.95 7.90 -92.71 -0.73 19.21 16 52 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -69.35 408.64 -0.36 -69.71 By element: Atomic # 1 Polarization: 56.24 SS G_CDS: -1.13 Total: 55.11 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 5.47 Total: 7.82 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -6.62 Total: -124.31 kcal Atomic # 8 Polarization: -53.46 SS G_CDS: -0.10 Total: -53.56 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -69.35 -0.36 -69.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698595825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.642 kcal (2) G-P(sol) polarization free energy of solvation -69.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds