Wall clock time and date at job start Tue Mar 31 2020 20:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47457 * 2 1 4 4 H 1.09009 * 109.47207 * 305.62119 * 3 2 1 5 5 C 1.53007 * 109.47324 * 65.61520 * 3 2 1 6 6 N 1.46504 * 109.46949 * 175.00503 * 5 3 2 7 7 C 1.34777 * 119.99338 * 180.02562 * 6 5 3 8 8 O 1.21273 * 120.00741 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99500 * 179.97438 * 7 6 5 10 10 C 1.50696 * 109.47364 * 179.97438 * 9 7 6 11 11 C 1.29442 * 117.96450 * 94.73242 * 10 9 7 12 12 C 1.50060 * 124.08255 * 180.24006 * 11 10 9 13 13 C 1.53026 * 110.19920 * 343.32180 * 12 11 10 14 14 C 1.53391 * 108.43869 * 49.24447 * 13 12 11 15 15 C 1.50067 * 117.96321 * 275.00299 * 10 9 7 16 16 N 1.46900 * 109.47485 * 185.62202 * 3 2 1 17 17 C 1.46891 * 111.00135 * 86.26052 * 16 3 2 18 18 C 1.50703 * 109.47161 * 174.55851 * 17 16 3 19 19 O 1.21296 * 119.99763 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00043 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99925 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99935 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00268 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99354 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00031 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47238 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47078 * 120.00014 * 25 23 21 28 28 H 1.48499 * 109.46620 * 239.99329 * 25 23 21 29 29 H 1.09006 * 109.46632 * 54.38395 * 1 2 3 30 30 H 1.08998 * 109.47006 * 294.38585 * 1 2 3 31 31 H 1.08998 * 109.47171 * 174.37860 * 1 2 3 32 32 H 1.09000 * 109.46636 * 119.99731 * 2 1 3 33 33 H 1.08992 * 109.47258 * 239.99437 * 2 1 3 34 34 H 1.08999 * 109.47337 * 295.00486 * 5 3 2 35 35 H 1.08998 * 109.46901 * 55.00115 * 5 3 2 36 36 H 0.96995 * 119.99845 * 0.02562 * 6 5 3 37 37 H 1.08999 * 109.47159 * 299.99862 * 9 7 6 38 38 H 1.08998 * 109.47403 * 59.99689 * 9 7 6 39 39 H 1.08005 * 117.95819 * 0.47474 * 11 10 9 40 40 H 1.08997 * 109.48848 * 223.00203 * 12 11 10 41 41 H 1.09006 * 109.18020 * 103.44620 * 12 11 10 42 42 H 1.09001 * 109.64153 * 289.56133 * 13 12 11 43 43 H 1.08996 * 109.81807 * 169.03357 * 13 12 11 44 44 H 1.09001 * 109.64580 * 172.88065 * 14 13 12 45 45 H 1.09009 * 109.64064 * 52.25161 * 14 13 12 46 46 H 1.08999 * 109.36150 * 283.04990 * 15 10 9 47 47 H 1.08998 * 109.35824 * 42.77182 * 15 10 9 48 48 H 1.00903 * 110.99187 * 322.30069 * 16 3 2 49 49 H 1.09004 * 109.47235 * 294.55717 * 17 16 3 50 50 H 1.09002 * 109.47350 * 54.55713 * 17 16 3 51 51 H 0.96998 * 120.00158 * 0.02562 * 20 18 17 52 52 H 0.97005 * 119.99445 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5969 1.9846 -0.8354 5 6 1.6487 2.1219 1.3139 6 7 2.2381 3.4621 1.3650 7 6 2.0268 4.2506 2.4375 8 8 1.3485 3.8509 3.3599 9 6 2.6335 5.6290 2.4904 10 6 2.2479 6.2983 3.7844 11 6 3.0717 6.2159 4.7794 12 6 2.8246 6.8250 6.1284 13 6 1.7108 7.8707 6.0400 14 6 0.5210 7.2505 5.2966 15 6 0.9299 7.0136 3.8411 16 7 3.5028 1.4447 -0.1357 17 6 3.9005 1.4008 -1.5490 18 6 5.3975 1.5389 -1.6542 19 8 6.0671 1.6624 -0.6504 20 7 5.9921 1.5254 -2.8636 21 6 7.3539 1.6516 -2.9593 22 1 7.9502 1.7615 -2.0656 23 6 7.9671 1.6382 -4.2062 24 7 7.2415 1.5039 -5.2936 25 14 9.8226 1.8094 -4.3364 26 1 10.4039 1.9452 -2.9768 27 1 10.3856 0.6051 -4.9980 28 1 10.1532 3.0148 -5.1384 29 1 -0.3633 0.5985 -0.8355 30 1 -0.3633 0.4243 0.9360 31 1 -0.3633 -1.0227 -0.1007 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 0.5631 2.1999 1.3733 35 1 2.0168 1.5307 2.1523 36 1 2.7803 3.7820 0.6271 37 1 3.7191 5.5507 2.4309 38 1 2.2655 6.2205 1.6521 39 1 3.9963 5.6785 4.6281 40 1 3.7383 7.2997 6.4859 41 1 2.5299 6.0414 6.8265 42 1 2.0698 8.7430 5.4938 43 1 1.4022 8.1675 7.0423 44 1 -0.3288 7.9321 5.3321 45 1 0.2531 6.3015 5.7611 46 1 1.0167 7.9722 3.3296 47 1 0.1690 6.4087 3.3481 48 1 3.9148 0.6814 0.3799 49 1 3.5919 0.4501 -1.9840 50 1 3.4214 2.2189 -2.0869 51 1 5.4566 1.4270 -3.6663 52 1 7.6695 1.4949 -6.1641 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698596681.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:33 Heat of formation + Delta-G solvation = -109.580422 kcal Electronic energy + Delta-G solvation = -28960.990625 eV Core-core repulsion = 24958.306743 eV Total energy + Delta-G solvation = -4002.683882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.95929 -40.18562 -39.23279 -38.33907 -35.96358 -34.97982 -33.83470 -33.55159 -33.15655 -31.61670 -29.89453 -28.48763 -27.20926 -25.65988 -24.37866 -24.09556 -22.67650 -21.82738 -21.15765 -21.00234 -19.89564 -18.48280 -18.13804 -17.68178 -17.30991 -16.73160 -16.65134 -16.35752 -16.20551 -16.03189 -15.55481 -15.43556 -15.02598 -14.88838 -14.69581 -14.45460 -14.36400 -14.22180 -13.85025 -13.60840 -13.48365 -13.41854 -13.28126 -13.09480 -12.97771 -12.92420 -12.60102 -12.58819 -12.47897 -12.38461 -12.11856 -12.07101 -11.64649 -11.59626 -11.49277 -11.32444 -11.09963 -10.89541 -10.32524 -9.99019 -9.93916 -9.65139 -9.31367 -8.45755 -5.93632 1.27893 1.36769 1.42435 1.55918 1.73062 2.08722 2.29197 2.45836 2.89306 3.22100 3.54673 3.68015 3.81079 3.81264 3.92738 4.06654 4.12394 4.21184 4.29100 4.34409 4.37320 4.38263 4.48133 4.50711 4.56652 4.57413 4.61945 4.71241 4.74122 4.77514 4.77750 4.84016 4.94007 5.00872 5.04772 5.09980 5.14194 5.20114 5.20859 5.32883 5.37306 5.42755 5.48075 5.57801 5.76071 5.89653 6.10582 6.12343 6.34832 6.62329 6.67787 7.15176 7.34849 7.59649 8.15322 8.71708 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.002268 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.476741 B =12340.632246 C =14451.355853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.083 3.917 4 H 0.099 0.901 5 C 0.137 3.863 6 N -0.710 5.710 7 C 0.510 3.490 8 O -0.582 6.582 9 C -0.110 4.110 10 C -0.109 4.109 11 C -0.162 4.162 12 C -0.089 4.089 13 C -0.116 4.116 14 C -0.118 4.118 15 C -0.078 4.078 16 N -0.673 5.673 17 C 0.067 3.933 18 C 0.439 3.561 19 O -0.622 6.622 20 N -0.575 5.575 21 C -0.329 4.329 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.990 3.010 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.271 1.271 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.412 0.588 37 H 0.102 0.898 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.345 0.655 49 H 0.067 0.933 50 H 0.110 0.890 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.653 7.942 12.505 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C -0.027 4.027 4 H 0.117 0.883 5 C 0.013 3.987 6 N -0.361 5.361 7 C 0.298 3.702 8 O -0.463 6.463 9 C -0.150 4.150 10 C -0.109 4.109 11 C -0.180 4.180 12 C -0.126 4.126 13 C -0.154 4.154 14 C -0.156 4.156 15 C -0.115 4.115 16 N -0.304 5.304 17 C -0.066 4.066 18 C 0.227 3.773 19 O -0.508 6.508 20 N -0.212 5.212 21 C -0.459 4.459 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.249 0.751 37 H 0.121 0.879 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.078 0.922 48 H 0.163 0.837 49 H 0.085 0.915 50 H 0.128 0.872 51 H 0.230 0.770 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.565 8.402 13.641 23.045 hybrid contribution 1.041 -1.255 -1.243 2.050 sum -15.523 7.147 12.398 21.113 Atomic orbital electron populations 1.21746 0.94014 1.02443 1.02332 1.22165 0.97928 0.96045 1.02602 1.21931 0.86938 0.96197 0.97664 0.88311 1.21326 0.97625 0.82716 0.97055 1.45886 1.52990 1.15877 1.21347 1.20977 0.80077 0.87674 0.81484 1.90654 1.41509 1.76129 1.38015 1.20900 1.02562 0.92272 0.99239 1.20480 0.96810 0.99225 0.94427 1.22062 0.99583 1.00773 0.95603 1.20441 0.99771 0.98252 0.94126 1.21595 0.94915 0.97766 1.01089 1.21578 0.98470 1.00618 0.94899 1.20359 0.93529 0.99721 0.97911 1.60068 1.08054 1.52741 1.09509 1.21568 0.90988 1.02922 0.91087 1.20936 0.91183 0.82131 0.83087 1.90511 1.67136 1.56050 1.37105 1.41939 1.07345 1.64563 1.07393 1.19655 0.83679 1.48804 0.93778 0.90482 1.25991 1.04556 0.96561 0.94207 1.69673 1.37716 1.50266 0.98467 0.84914 0.77282 0.78262 0.78159 1.19918 1.19768 1.19636 0.91796 0.92450 0.92030 0.91764 0.91347 0.90564 0.93500 0.75146 0.87948 0.86277 0.88914 0.90114 0.91553 0.91206 0.90502 0.90273 0.93355 0.89553 0.92173 0.83651 0.91543 0.87242 0.76988 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.54 71.98 0.69 -1.45 16 2 C -0.15 -2.59 5.38 30.59 0.16 -2.42 16 3 C 0.08 1.66 2.21 44.92 0.10 1.76 16 4 H 0.10 1.74 7.69 -2.38 -0.02 1.72 16 5 C 0.14 3.09 5.02 86.38 0.43 3.52 16 6 N -0.71 -16.90 5.39 -463.05 -2.50 -19.39 16 7 C 0.51 13.50 7.82 87.66 0.69 14.19 16 8 O -0.58 -19.48 16.03 -3.01 -0.05 -19.53 16 9 C -0.11 -2.31 5.71 29.10 0.17 -2.14 16 10 C -0.11 -2.37 4.33 -15.10 -0.07 -2.44 16 11 C -0.16 -3.58 9.37 27.04 0.25 -3.32 16 12 C -0.09 -1.59 6.11 29.66 0.18 -1.41 16 13 C -0.12 -1.73 6.01 30.73 0.18 -1.55 16 14 C -0.12 -2.00 6.01 30.73 0.18 -1.81 16 15 C -0.08 -1.46 5.80 29.66 0.17 -1.29 16 16 N -0.67 -18.40 5.23 -495.57 -2.59 -20.99 16 17 C 0.07 2.00 5.99 85.56 0.51 2.52 16 18 C 0.44 19.63 7.83 87.66 0.69 20.32 16 19 O -0.62 -33.06 15.90 -3.08 -0.05 -33.10 16 20 N -0.57 -28.26 5.29 -306.98 -1.62 -29.88 16 21 C -0.33 -18.27 9.68 84.04 0.81 -17.46 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -48.61 13.05 21.67 0.28 -48.33 16 25 Si 0.99 42.35 29.55 68.60 2.03 44.38 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 29 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.06 0.85 6.98 -2.39 -0.02 0.83 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.23 7.52 -2.39 -0.02 1.21 16 34 H 0.08 1.62 6.96 -2.39 -0.02 1.60 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.41 9.35 8.14 -92.71 -0.75 8.60 16 37 H 0.10 2.09 7.80 -2.39 -0.02 2.07 16 38 H 0.12 1.90 8.11 -2.39 -0.02 1.88 16 39 H 0.09 2.14 7.74 -2.91 -0.02 2.12 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.07 0.96 8.12 -2.39 -0.02 0.94 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.05 0.99 8.13 -2.38 -0.02 0.97 16 46 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.34 10.40 8.36 -89.69 -0.75 9.65 16 49 H 0.07 1.76 7.56 -2.38 -0.02 1.74 16 50 H 0.11 2.83 7.92 -2.39 -0.02 2.81 16 51 H 0.40 18.43 7.90 -92.71 -0.73 17.70 16 52 H 0.28 13.69 8.31 -92.70 -0.77 12.92 16 Total: -1.00 -69.80 419.91 -0.18 -69.97 By element: Atomic # 1 Polarization: 51.40 SS G_CDS: -1.31 Total: 50.10 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 5.63 Total: 6.78 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -6.43 Total: -118.60 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -0.10 Total: -52.63 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -69.80 -0.18 -69.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698596681.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.607 kcal (2) G-P(sol) polarization free energy of solvation -69.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds