Wall clock time and date at job start Tue Mar 31 2020 20:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47342 * 2 1 4 4 H 1.09003 * 109.46908 * 305.23071 * 3 2 1 5 5 C 1.53002 * 109.47003 * 185.23566 * 3 2 1 6 6 N 1.46498 * 109.46953 * 185.00064 * 5 3 2 7 7 C 1.34782 * 120.00081 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99447 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00044 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.46947 * 179.97438 * 9 7 6 11 11 C 1.29443 * 117.96265 * 94.73803 * 10 9 7 12 12 C 1.50062 * 124.07844 * 180.23598 * 11 10 9 13 13 C 1.53017 * 110.20247 * 343.31967 * 12 11 10 14 14 C 1.53390 * 108.44212 * 49.24409 * 13 12 11 15 15 C 1.50069 * 117.96511 * 274.99811 * 10 9 7 16 16 N 1.46892 * 109.47255 * 65.23318 * 3 2 1 17 17 C 1.46905 * 111.00180 * 58.35379 * 16 3 2 18 18 C 1.50698 * 109.47163 * 174.49088 * 17 16 3 19 19 O 1.21296 * 120.00419 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99654 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99873 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99638 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00138 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86790 * 120.00251 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47292 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47527 * 119.99584 * 25 23 21 28 28 H 1.48502 * 109.47361 * 239.99804 * 25 23 21 29 29 H 1.08996 * 109.47928 * 174.88851 * 1 2 3 30 30 H 1.09003 * 109.46773 * 294.89031 * 1 2 3 31 31 H 1.08997 * 109.47253 * 54.88336 * 1 2 3 32 32 H 1.09000 * 109.46810 * 239.99598 * 2 1 3 33 33 H 1.08999 * 109.47262 * 120.00116 * 2 1 3 34 34 H 1.08999 * 109.46690 * 304.99619 * 5 3 2 35 35 H 1.08998 * 109.47379 * 64.99889 * 5 3 2 36 36 H 0.96998 * 120.00571 * 359.97438 * 6 5 3 37 37 H 1.08999 * 109.47103 * 299.99469 * 9 7 6 38 38 H 1.08998 * 109.47214 * 59.99892 * 9 7 6 39 39 H 1.07999 * 117.96229 * 0.46413 * 11 10 9 40 40 H 1.08999 * 109.48659 * 222.99555 * 12 11 10 41 41 H 1.09009 * 109.17878 * 103.44446 * 12 11 10 42 42 H 1.08999 * 109.64080 * 289.55942 * 13 12 11 43 43 H 1.09005 * 109.64801 * 168.93260 * 13 12 11 44 44 H 1.08997 * 109.64494 * 172.88277 * 14 13 12 45 45 H 1.09003 * 109.64188 * 52.25067 * 14 13 12 46 46 H 1.09000 * 109.35988 * 283.05683 * 15 10 9 47 47 H 1.09001 * 109.35427 * 42.77248 * 15 10 9 48 48 H 1.00900 * 111.00181 * 294.39912 * 16 3 2 49 49 H 1.08998 * 109.46935 * 294.49220 * 17 16 3 50 50 H 1.08992 * 109.47047 * 54.48892 * 17 16 3 51 51 H 0.97005 * 120.00169 * 0.02562 * 20 18 17 52 52 H 0.96998 * 119.99893 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6022 1.9826 -0.8395 5 6 3.5644 1.4444 -0.1316 6 7 4.0631 2.8166 -0.0119 7 6 5.3855 3.0629 -0.0965 8 8 6.1626 2.1482 -0.2714 9 6 5.8985 4.4745 0.0260 10 6 7.4000 4.4762 -0.1022 11 6 7.9091 4.7037 -1.2704 12 6 9.3823 4.7321 -1.5545 13 6 10.1695 4.8717 -0.2499 14 6 9.6445 3.8312 0.7474 15 6 8.2120 4.2083 1.1311 16 7 1.6563 2.0975 1.2575 17 6 2.1974 1.3728 2.4152 18 6 1.8997 2.1445 3.6749 19 8 1.2958 3.1947 3.6144 20 7 2.3037 1.6672 4.8688 21 6 2.0325 2.3690 6.0149 22 1 1.4955 3.3045 5.9609 23 6 2.4493 1.8773 7.2458 24 7 3.1032 0.7392 7.3114 25 14 2.0805 2.8337 8.8073 26 1 1.3385 4.0737 8.4647 27 1 1.2556 1.9981 9.7165 28 1 3.3544 3.1902 9.4821 29 1 -0.3635 -1.0235 -0.0916 30 1 -0.3633 0.4325 0.9323 31 1 -0.3633 0.5911 -0.8406 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9979 0.8301 0.6575 35 1 3.8457 1.0390 -1.1036 36 1 3.4417 3.5481 0.1283 37 1 5.4653 5.0883 -0.7637 38 1 5.6167 4.8804 0.9976 39 1 7.2316 4.8880 -2.0909 40 1 9.6107 5.5753 -2.2063 41 1 9.6690 3.8055 -2.0521 42 1 10.0291 5.8730 0.1574 43 1 11.2283 4.6954 -0.4400 44 1 10.2733 3.8270 1.6377 45 1 9.6522 2.8441 0.2851 46 1 8.2283 5.1024 1.7543 47 1 7.7614 3.3873 1.6889 48 1 0.6539 2.1907 1.3255 49 1 1.7355 0.3873 2.4751 50 1 3.2759 1.2623 2.3030 51 1 2.7863 0.8271 4.9172 52 1 3.3945 0.3961 8.1706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698596686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:35 Heat of formation + Delta-G solvation = -105.835871 kcal Electronic energy + Delta-G solvation = -29631.400889 eV Core-core repulsion = 25628.879384 eV Total energy + Delta-G solvation = -4002.521506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.04008 -40.28431 -39.25427 -38.48601 -35.95958 -35.04711 -33.80167 -33.31341 -32.78880 -31.62991 -30.13638 -28.53763 -27.57763 -26.03384 -24.36407 -24.01780 -22.61276 -21.78099 -21.18827 -20.52912 -19.86749 -18.47398 -18.32347 -17.93330 -17.22472 -17.04371 -16.51210 -16.36707 -16.17511 -15.87841 -15.78725 -15.33060 -15.19905 -14.82239 -14.78507 -14.59289 -14.50526 -14.14148 -14.03370 -13.59851 -13.53863 -13.42798 -13.16824 -13.11881 -13.00849 -12.90749 -12.75626 -12.53754 -12.40641 -12.28750 -12.11981 -11.84956 -11.69451 -11.67236 -11.50691 -11.34277 -11.10506 -10.90411 -10.34787 -10.01507 -9.97105 -9.64914 -9.34183 -8.46931 -5.95714 1.28222 1.35909 1.41023 1.55274 1.71785 2.05349 2.27843 2.42259 2.94826 3.20325 3.53128 3.67092 3.73390 3.80422 3.97438 4.04488 4.11141 4.16514 4.27104 4.28189 4.34578 4.36158 4.45936 4.47608 4.52675 4.56526 4.58998 4.66849 4.73494 4.75489 4.78290 4.79817 4.93252 5.00073 5.02560 5.09853 5.10464 5.17699 5.24378 5.32452 5.36762 5.40615 5.45868 5.53264 5.75712 5.87481 6.08046 6.11741 6.40225 6.59081 6.66920 7.12433 7.34176 7.56163 8.10761 8.70858 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007870 B = 0.003085 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3556.765931 B = 9072.714214 C =11882.211962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.085 3.915 4 H 0.113 0.887 5 C 0.127 3.873 6 N -0.710 5.710 7 C 0.509 3.491 8 O -0.582 6.582 9 C -0.108 4.108 10 C -0.115 4.115 11 C -0.150 4.150 12 C -0.089 4.089 13 C -0.116 4.116 14 C -0.119 4.119 15 C -0.084 4.084 16 N -0.663 5.663 17 C 0.064 3.936 18 C 0.441 3.559 19 O -0.616 6.616 20 N -0.577 5.577 21 C -0.330 4.330 22 H 0.081 0.919 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.415 0.585 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.079 0.921 47 H 0.046 0.954 48 H 0.352 0.648 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.393 0.607 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.439 3.468 -19.524 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.197 4.197 3 C -0.025 4.025 4 H 0.131 0.869 5 C 0.002 3.998 6 N -0.362 5.362 7 C 0.296 3.704 8 O -0.463 6.463 9 C -0.148 4.148 10 C -0.115 4.115 11 C -0.168 4.168 12 C -0.125 4.125 13 C -0.153 4.153 14 C -0.156 4.156 15 C -0.121 4.121 16 N -0.296 5.296 17 C -0.069 4.069 18 C 0.229 3.771 19 O -0.502 6.502 20 N -0.214 5.214 21 C -0.459 4.459 22 H 0.099 0.901 23 C -0.215 4.215 24 N -0.564 5.564 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.252 0.748 37 H 0.140 0.860 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.064 0.936 48 H 0.172 0.828 49 H 0.083 0.917 50 H 0.106 0.894 51 H 0.226 0.774 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.139 3.872 -19.549 21.169 hybrid contribution -0.900 -0.907 1.319 1.837 sum 6.240 2.965 -18.229 19.495 Atomic orbital electron populations 1.21740 0.94705 1.02553 1.01790 1.22178 0.97123 0.97039 1.03333 1.21963 0.93489 0.94390 0.92702 0.86905 1.21405 0.93490 0.83567 1.01312 1.45869 1.07204 1.10406 1.72691 1.21044 0.82146 0.91803 0.75392 1.90665 1.56919 1.47795 1.50896 1.20887 0.94498 0.93416 1.05978 1.20405 0.93553 1.01514 0.96078 1.22074 0.97783 1.00877 0.96106 1.20462 0.91493 1.02493 0.98098 1.21598 0.99721 0.99061 0.94968 1.21570 0.95216 0.99036 0.99786 1.20357 0.95382 1.00829 0.95526 1.60144 1.18489 1.51168 0.99796 1.21497 1.01362 0.95224 0.88782 1.20823 0.83373 0.87515 0.85401 1.90484 1.46362 1.26112 1.87277 1.41977 1.51167 1.22855 1.05402 1.19697 1.35537 1.05729 0.84951 0.90122 1.26057 0.96171 0.97268 1.01982 1.69691 1.38736 1.20341 1.27649 0.84875 0.78241 0.78091 0.77180 1.19522 1.19642 1.19782 0.91796 0.94105 0.91116 0.89522 0.92363 0.93598 0.90507 0.74794 0.85996 0.88006 0.87324 0.89381 0.91261 0.91311 0.90418 0.91062 0.93200 0.90313 0.93557 0.82767 0.91736 0.89355 0.77358 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.57 71.98 0.69 -1.84 16 2 C -0.16 -2.79 5.15 30.59 0.16 -2.63 16 3 C 0.08 1.67 2.70 44.92 0.12 1.79 16 4 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 5 C 0.13 2.94 4.72 86.38 0.41 3.35 16 6 N -0.71 -17.27 5.39 -463.06 -2.50 -19.76 16 7 C 0.51 14.12 7.82 87.65 0.69 14.80 16 8 O -0.58 -20.57 16.03 -3.03 -0.05 -20.62 16 9 C -0.11 -2.38 5.71 29.10 0.17 -2.22 16 10 C -0.12 -2.69 4.33 -15.10 -0.07 -2.75 16 11 C -0.15 -3.07 9.37 27.04 0.25 -2.82 16 12 C -0.09 -1.50 6.11 29.65 0.18 -1.31 16 13 C -0.12 -1.93 6.01 30.73 0.18 -1.74 16 14 C -0.12 -2.52 6.01 30.73 0.18 -2.33 16 15 C -0.08 -2.05 5.80 29.66 0.17 -1.87 16 16 N -0.66 -18.12 5.35 -495.60 -2.65 -20.77 16 17 C 0.06 2.14 5.33 85.56 0.46 2.60 16 18 C 0.44 20.64 7.83 87.66 0.69 21.33 16 19 O -0.62 -32.91 15.90 -3.08 -0.05 -32.96 16 20 N -0.58 -29.78 5.29 -306.98 -1.62 -31.40 16 21 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 24 N -0.92 -50.58 13.05 21.66 0.28 -50.30 16 25 Si 0.99 43.15 29.55 68.60 2.03 45.17 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.82 7.16 -2.39 -0.02 0.80 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.21 6.22 -2.39 -0.01 1.19 16 34 H 0.05 1.27 6.59 -2.39 -0.02 1.26 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.42 9.29 8.14 -92.71 -0.75 8.53 16 37 H 0.12 1.97 7.80 -2.39 -0.02 1.95 16 38 H 0.10 2.22 8.11 -2.39 -0.02 2.20 16 39 H 0.11 1.96 7.74 -2.91 -0.02 1.94 16 40 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 43 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.05 1.20 8.12 -2.39 -0.02 1.18 16 46 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.35 9.88 7.40 -89.69 -0.66 9.22 16 49 H 0.06 1.97 6.47 -2.39 -0.02 1.95 16 50 H 0.09 2.99 6.18 -2.39 -0.01 2.97 16 51 H 0.39 19.69 7.90 -92.70 -0.73 18.96 16 52 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -70.91 414.52 -0.21 -71.12 By element: Atomic # 1 Polarization: 54.69 SS G_CDS: -1.21 Total: 53.47 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 5.56 Total: 6.06 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -6.49 Total: -122.24 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.10 Total: -53.58 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.91 -0.21 -71.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698596686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.715 kcal (2) G-P(sol) polarization free energy of solvation -70.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds