Wall clock time and date at job start Tue Mar 31 2020 20:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47187 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47561 * 180.02562 * 10 9 7 12 12 N 1.30253 * 125.62294 * 90.01382 * 11 10 9 13 13 C 1.34476 * 108.69976 * 179.97438 * 12 11 10 14 14 C 1.34327 * 107.67047 * 0.02562 * 13 12 11 15 15 C 1.50703 * 126.44079 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47205 * 60.00225 * 15 14 13 17 17 C 1.53002 * 109.46862 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47135 * 299.99714 * 15 14 13 19 19 O 1.33971 * 125.61445 * 269.71904 * 11 10 9 20 20 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 30 30 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 31 31 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 35 35 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 36 36 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 37 37 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 38 38 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 39 39 H 1.09008 * 109.46844 * 299.99705 * 10 9 7 40 40 H 1.08996 * 109.47561 * 59.99717 * 10 9 7 41 41 H 1.08001 * 126.15895 * 180.02562 * 13 12 11 42 42 H 1.09003 * 109.47291 * 59.99458 * 16 15 14 43 43 H 1.08995 * 109.47331 * 179.97438 * 16 15 14 44 44 H 1.09002 * 109.46950 * 299.99899 * 16 15 14 45 45 H 1.09006 * 109.47097 * 59.99690 * 17 15 14 46 46 H 1.08995 * 109.47134 * 180.02562 * 17 15 14 47 47 H 1.09003 * 109.46982 * 300.00142 * 17 15 14 48 48 H 1.09002 * 109.46866 * 60.00195 * 18 15 14 49 49 H 1.08995 * 109.46738 * 180.02562 * 18 15 14 50 50 H 1.08997 * 109.47611 * 300.00464 * 18 15 14 51 51 H 0.97004 * 119.99747 * 95.00774 * 20 3 2 52 52 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 6 7.4228 4.4768 -0.0903 11 6 7.9355 5.8885 0.0341 12 7 8.2814 6.4750 1.1445 13 6 8.6871 7.7258 0.8631 14 6 8.5816 7.8998 -0.4646 15 6 8.9260 9.1490 -1.2339 16 6 10.4045 9.4840 -1.0271 17 6 8.6588 8.9209 -2.7231 18 6 8.0650 10.3102 -0.7329 19 8 8.1159 6.7451 -0.9801 20 7 1.6524 2.0974 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0486 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.7858 4.6654 4.0714 27 1 -1.7857 5.1494 1.6951 28 1 -2.6865 3.0484 2.5046 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8311 0.6659 35 1 3.8498 1.0377 -1.0961 36 1 3.4410 3.5483 0.1315 37 1 5.4672 5.0884 -0.7542 38 1 5.6136 4.8809 1.0075 39 1 7.8542 3.8631 0.7006 40 1 7.7071 4.0708 -1.0610 41 1 9.0352 8.4584 1.5763 42 1 11.0179 8.6567 -1.3841 43 1 10.6537 10.3873 -1.5839 44 1 10.5953 9.6464 0.0337 45 1 7.6056 8.6819 -2.8708 46 1 8.9084 9.8242 -3.2796 47 1 9.2725 8.0936 -3.0797 48 1 8.2558 10.4726 0.3280 49 1 8.3139 11.2136 -1.2896 50 1 7.0117 10.0716 -0.8802 51 1 2.2720 2.1231 1.9978 52 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698601736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:45 Heat of formation + Delta-G solvation = -34.338087 kcal Electronic energy + Delta-G solvation = -29013.433478 eV Core-core repulsion = 25014.012349 eV Total energy + Delta-G solvation = -3999.421129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.53199 -39.55942 -37.46951 -36.90368 -34.94524 -33.89914 -33.69591 -32.60497 -29.77933 -29.21629 -27.90103 -27.75789 -27.62388 -25.26527 -23.44706 -22.95021 -22.48591 -21.31580 -20.35220 -19.93415 -19.75514 -17.59985 -17.37982 -16.88876 -16.53501 -15.84676 -15.71916 -15.35922 -14.82585 -14.69298 -14.47113 -14.36475 -13.81254 -13.64923 -13.63693 -13.50884 -13.25476 -12.98214 -12.80566 -12.66579 -12.65297 -12.36501 -12.14610 -12.04121 -11.95503 -11.65063 -11.50890 -11.39092 -11.37887 -11.26749 -11.01697 -10.82246 -10.58408 -10.55597 -10.37739 -10.13704 -9.91211 -9.71111 -9.23289 -8.98342 -8.81487 -8.74191 -7.12612 -6.14223 -3.16170 1.27254 2.40400 2.54342 2.82207 3.42666 3.47713 3.50201 3.67998 3.92538 4.21161 4.40130 4.43941 4.61166 4.69041 4.72498 4.86554 4.99361 5.08389 5.13572 5.15403 5.29897 5.30763 5.34641 5.36001 5.39781 5.40399 5.46527 5.51956 5.57635 5.64206 5.68471 5.80342 5.80704 5.82038 5.87106 5.88360 5.89007 5.94932 6.06517 6.17449 6.29836 6.45910 6.49706 6.53555 6.79377 6.93172 7.19381 7.62293 7.75662 7.80759 8.43874 8.69489 9.14260 10.01078 10.16003 11.32748 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012272 B = 0.002224 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.139414 B =12585.326127 C =13942.075244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.054 0.946 5 C 0.113 3.887 6 N -0.712 5.712 7 C 0.515 3.485 8 O -0.555 6.555 9 C -0.139 4.139 10 C -0.004 4.004 11 C 0.193 3.807 12 N -0.477 5.477 13 C -0.038 4.038 14 C -0.039 4.039 15 C 0.019 3.981 16 C -0.140 4.140 17 C -0.145 4.145 18 C -0.141 4.141 19 O -0.196 6.196 20 N -0.732 5.732 21 C -0.329 4.329 22 H 0.067 0.933 23 C -0.043 4.043 24 N -0.941 5.941 25 Si 1.075 2.925 26 H -0.286 1.286 27 H -0.296 1.296 28 H -0.295 1.295 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.411 0.589 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.180 0.820 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.069 0.931 50 H 0.061 0.939 51 H 0.368 0.632 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.978 10.766 -12.140 22.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.072 0.928 5 C -0.011 4.011 6 N -0.363 5.363 7 C 0.300 3.700 8 O -0.434 6.434 9 C -0.180 4.180 10 C -0.043 4.043 11 C -0.014 4.014 12 N -0.205 5.205 13 C -0.177 4.177 14 C -0.092 4.092 15 C 0.018 3.982 16 C -0.197 4.197 17 C -0.202 4.202 18 C -0.198 4.198 19 O -0.083 6.083 20 N -0.376 5.376 21 C -0.459 4.459 22 H 0.085 0.915 23 C -0.241 4.241 24 N -0.586 5.586 25 Si 0.907 3.093 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.223 1.223 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.247 0.753 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.118 0.882 41 H 0.197 0.803 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.201 0.799 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.292 10.655 -10.852 21.567 hybrid contribution 0.819 -0.217 -1.287 1.541 sum 16.112 10.438 -12.139 22.713 Atomic orbital electron populations 1.21763 0.95578 0.99617 1.03356 1.22058 0.97124 0.98266 0.99967 1.20503 0.89826 0.92773 0.91086 0.92755 1.21699 0.95624 0.82626 1.01189 1.45988 1.07124 1.10873 1.72335 1.20332 0.82613 0.90561 0.76457 1.90682 1.56013 1.46533 1.50143 1.21618 0.95017 0.95664 1.05665 1.19792 0.94294 0.83896 1.06299 1.26290 1.00133 0.94993 0.79981 1.70487 1.15464 1.06711 1.27874 1.22980 1.05680 0.94788 0.94221 1.23356 1.04094 0.87678 0.94093 1.19116 0.96640 0.87656 0.94750 1.21934 0.93096 1.02079 1.02609 1.21876 1.02651 1.02276 0.93410 1.21939 0.99749 0.96396 1.01731 1.84391 1.63749 1.21056 1.39057 1.42461 1.16820 1.67039 1.11281 1.19982 0.92624 1.32356 1.00970 0.91483 1.25703 1.05683 1.00429 0.92302 1.70888 1.08450 1.47334 1.31922 0.83299 0.74367 0.75876 0.75807 1.21131 1.22325 1.22288 0.89608 0.94103 0.94869 0.93778 0.92689 0.91876 0.91721 0.75298 0.88544 0.87750 0.86773 0.88228 0.80334 0.92140 0.91189 0.91858 0.91941 0.91597 0.92074 0.91821 0.91185 0.91950 0.79866 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.18 37.15 0.34 -2.28 16 2 C -0.13 -2.30 5.61 -26.73 -0.15 -2.45 16 3 C 0.17 3.08 2.59 -67.93 -0.18 2.90 16 4 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 5 C 0.11 1.87 5.23 -4.04 -0.02 1.85 16 6 N -0.71 -11.29 5.39 -60.29 -0.32 -11.61 16 7 C 0.51 7.89 7.83 -10.99 -0.09 7.81 16 8 O -0.55 -9.98 15.98 5.55 0.09 -9.89 16 9 C -0.14 -1.71 5.68 -27.88 -0.16 -1.87 16 10 C 0.00 -0.05 5.13 -27.88 -0.14 -0.20 16 11 C 0.19 2.49 7.60 -12.95 -0.10 2.39 16 12 N -0.48 -6.70 11.29 -11.10 -0.13 -6.82 16 13 C -0.04 -0.44 11.24 -17.77 -0.20 -0.64 16 14 C -0.04 -0.41 5.70 -35.69 -0.20 -0.62 16 15 C 0.02 0.14 0.93 -155.66 -0.15 -0.01 16 16 C -0.14 -0.81 8.35 37.16 0.31 -0.50 16 17 C -0.14 -1.02 8.06 37.16 0.30 -0.72 16 18 C -0.14 -0.89 8.35 37.16 0.31 -0.58 16 19 O -0.20 -2.41 10.24 5.36 0.05 -2.35 16 20 N -0.73 -16.41 4.50 -53.43 -0.24 -16.65 16 21 C -0.33 -8.33 7.75 -15.06 -0.12 -8.45 16 22 H 0.07 1.69 7.32 -52.48 -0.38 1.30 16 23 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 24 N -0.94 -27.74 13.70 55.49 0.76 -26.98 16 25 Si 1.08 24.82 29.92 -169.99 -5.09 19.74 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.30 -6.57 7.11 56.52 0.40 -6.16 16 29 H 0.09 1.83 5.99 -51.93 -0.31 1.52 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.41 6.64 8.14 -40.82 -0.33 6.30 16 37 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.11 1.42 8.10 -51.92 -0.42 1.00 16 40 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 41 H 0.18 1.59 8.06 -52.49 -0.42 1.16 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.34 8.02 -51.93 -0.42 -0.07 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.38 8.02 -51.93 -0.42 -0.04 16 49 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.37 8.81 6.63 -40.82 -0.27 8.54 16 52 H 0.26 7.45 6.77 -40.82 -0.28 7.18 16 LS Contribution 422.44 15.07 6.37 6.37 Total: -1.00 -31.52 422.44 -8.07 -39.59 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -9.23 Total: 13.23 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -0.33 Total: -4.61 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.07 Total: -62.06 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.14 Total: -12.24 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.09 Total: 19.74 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -31.52 -8.07 -39.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698601736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.250 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds