Wall clock time and date at job start Tue Mar 31 2020 20:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47187 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47561 * 180.02562 * 10 9 7 12 12 N 1.30253 * 125.62294 * 90.01382 * 11 10 9 13 13 C 1.34476 * 108.69976 * 179.97438 * 12 11 10 14 14 C 1.34327 * 107.67047 * 0.02562 * 13 12 11 15 15 C 1.50703 * 126.44079 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47205 * 60.00225 * 15 14 13 17 17 C 1.53002 * 109.46862 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47135 * 299.99714 * 15 14 13 19 19 O 1.33971 * 125.61445 * 269.71904 * 11 10 9 20 20 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 30 30 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 31 31 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 35 35 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 36 36 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 37 37 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 38 38 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 39 39 H 1.09008 * 109.46844 * 299.99705 * 10 9 7 40 40 H 1.08996 * 109.47561 * 59.99717 * 10 9 7 41 41 H 1.08001 * 126.15895 * 180.02562 * 13 12 11 42 42 H 1.09003 * 109.47291 * 59.99458 * 16 15 14 43 43 H 1.08995 * 109.47331 * 179.97438 * 16 15 14 44 44 H 1.09002 * 109.46950 * 299.99899 * 16 15 14 45 45 H 1.09006 * 109.47097 * 59.99690 * 17 15 14 46 46 H 1.08995 * 109.47134 * 180.02562 * 17 15 14 47 47 H 1.09003 * 109.46982 * 300.00142 * 17 15 14 48 48 H 1.09002 * 109.46866 * 60.00195 * 18 15 14 49 49 H 1.08995 * 109.46738 * 180.02562 * 18 15 14 50 50 H 1.08997 * 109.47611 * 300.00464 * 18 15 14 51 51 H 0.97004 * 119.99747 * 95.00774 * 20 3 2 52 52 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 6 7.4228 4.4768 -0.0903 11 6 7.9355 5.8885 0.0341 12 7 8.2814 6.4750 1.1445 13 6 8.6871 7.7258 0.8631 14 6 8.5816 7.8998 -0.4646 15 6 8.9260 9.1490 -1.2339 16 6 10.4045 9.4840 -1.0271 17 6 8.6588 8.9209 -2.7231 18 6 8.0650 10.3102 -0.7329 19 8 8.1159 6.7451 -0.9801 20 7 1.6524 2.0974 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0486 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.7858 4.6654 4.0714 27 1 -1.7857 5.1494 1.6951 28 1 -2.6865 3.0484 2.5046 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8311 0.6659 35 1 3.8498 1.0377 -1.0961 36 1 3.4410 3.5483 0.1315 37 1 5.4672 5.0884 -0.7542 38 1 5.6136 4.8809 1.0075 39 1 7.8542 3.8631 0.7006 40 1 7.7071 4.0708 -1.0610 41 1 9.0352 8.4584 1.5763 42 1 11.0179 8.6567 -1.3841 43 1 10.6537 10.3873 -1.5839 44 1 10.5953 9.6464 0.0337 45 1 7.6056 8.6819 -2.8708 46 1 8.9084 9.8242 -3.2796 47 1 9.2725 8.0936 -3.0797 48 1 8.2558 10.4726 0.3280 49 1 8.3139 11.2136 -1.2896 50 1 7.0117 10.0716 -0.8802 51 1 2.2720 2.1231 1.9978 52 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698601736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:44 Heat of formation + Delta-G solvation = -55.364863 kcal Electronic energy + Delta-G solvation = -29014.345267 eV Core-core repulsion = 25014.012349 eV Total energy + Delta-G solvation = -4000.332919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.44417 -40.85651 -38.48856 -38.04285 -35.90830 -35.43359 -34.74538 -34.29010 -31.37806 -30.36884 -29.17924 -28.28482 -28.21713 -26.42136 -25.27240 -23.93559 -23.75967 -22.28721 -21.78602 -21.08827 -20.64946 -19.44020 -18.52537 -17.83769 -17.58205 -17.09051 -16.98038 -16.44653 -16.17518 -16.03360 -15.50267 -15.35176 -15.01875 -14.87709 -14.73473 -14.69973 -14.38674 -14.14722 -14.05972 -13.53214 -13.43428 -13.20614 -13.19627 -13.14136 -12.72788 -12.65195 -12.63761 -12.56569 -12.37909 -12.25140 -12.09389 -12.03485 -12.00046 -11.93400 -11.82428 -11.54376 -11.44947 -11.18223 -11.05145 -10.84111 -10.08063 -9.68867 -9.06601 -8.26057 -5.21620 0.37559 1.52028 1.57637 1.61589 1.61702 1.69721 1.85268 2.23857 2.75493 3.00293 3.49220 3.54056 3.65548 3.73981 3.78217 3.86497 3.90989 3.92106 3.96334 4.11831 4.18635 4.29260 4.39715 4.41680 4.49681 4.59231 4.67496 4.69799 4.70816 4.73848 4.78646 4.80582 4.83538 4.87182 4.93381 4.99199 5.02798 5.05909 5.06521 5.14471 5.23073 5.27190 5.33299 5.35270 5.41371 5.50139 5.65067 5.73587 6.50989 6.58983 6.69630 7.14716 7.17257 8.06067 8.18568 9.24442 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012272 B = 0.002224 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.139414 B =12585.326127 C =13942.075244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.169 3.831 4 H 0.057 0.943 5 C 0.121 3.879 6 N -0.713 5.713 7 C 0.516 3.484 8 O -0.580 6.580 9 C -0.128 4.128 10 C 0.003 3.997 11 C 0.181 3.819 12 N -0.506 5.506 13 C -0.056 4.056 14 C -0.032 4.032 15 C 0.018 3.982 16 C -0.138 4.138 17 C -0.144 4.144 18 C -0.139 4.139 19 O -0.203 6.203 20 N -0.739 5.739 21 C -0.303 4.303 22 H 0.072 0.928 23 C -0.105 4.105 24 N -0.981 5.981 25 Si 1.117 2.883 26 H -0.302 1.302 27 H -0.278 1.278 28 H -0.282 1.282 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.410 0.590 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.200 0.800 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.052 0.948 48 H 0.066 0.934 49 H 0.092 0.908 50 H 0.049 0.951 51 H 0.358 0.642 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.158 11.792 -14.241 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.061 3.939 4 H 0.075 0.925 5 C -0.003 4.003 6 N -0.364 5.364 7 C 0.304 3.696 8 O -0.461 6.461 9 C -0.168 4.168 10 C -0.035 4.035 11 C -0.026 4.026 12 N -0.235 5.235 13 C -0.194 4.194 14 C -0.085 4.085 15 C 0.017 3.983 16 C -0.195 4.195 17 C -0.201 4.201 18 C -0.196 4.196 19 O -0.090 6.090 20 N -0.381 5.381 21 C -0.435 4.435 22 H 0.090 0.910 23 C -0.297 4.297 24 N -0.630 5.630 25 Si 0.944 3.056 26 H -0.229 1.229 27 H -0.204 1.204 28 H -0.209 1.209 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.246 0.754 37 H 0.134 0.866 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.217 0.783 42 H 0.070 0.930 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.106 0.894 47 H 0.071 0.929 48 H 0.085 0.915 49 H 0.110 0.890 50 H 0.068 0.932 51 H 0.190 0.810 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.473 11.661 -13.017 23.342 hybrid contribution 0.814 -0.572 -0.732 1.235 sum 16.287 11.090 -13.748 24.026 Atomic orbital electron populations 1.21686 0.95950 1.00554 1.01761 1.21989 0.96686 0.97328 1.01031 1.20654 0.91043 0.93136 0.89093 0.92483 1.21577 0.94124 0.82989 1.01627 1.46002 1.07427 1.10571 1.72363 1.20739 0.82056 0.91393 0.75428 1.90669 1.56475 1.47633 1.51356 1.21542 0.95340 0.93812 1.06120 1.19700 0.93805 0.83596 1.06440 1.26309 1.00876 0.95319 0.80047 1.70452 1.16223 1.08092 1.28745 1.23368 1.06347 0.94498 0.95229 1.24083 1.02278 0.87876 0.94300 1.19358 0.97955 0.86417 0.94569 1.21942 0.91516 1.02716 1.03291 1.21884 1.01757 1.03090 0.93403 1.21952 0.98693 0.96653 1.02351 1.84394 1.63883 1.21626 1.39075 1.42589 1.15815 1.67298 1.12436 1.20219 0.93225 1.29752 1.00279 0.91045 1.26837 1.08078 1.02108 0.92652 1.70994 1.08672 1.49986 1.33323 0.82729 0.71688 0.75885 0.75256 1.22864 1.20387 1.20899 0.93441 0.93215 0.92821 0.90498 0.93769 0.93114 0.89952 0.75400 0.86601 0.88134 0.87658 0.87365 0.78330 0.92962 0.88999 0.91438 0.93080 0.89351 0.92870 0.91468 0.88970 0.93222 0.80982 0.94602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 9.18 71.98 0.66 -4.18 16 2 C -0.13 -4.22 5.61 30.59 0.17 -4.05 16 3 C 0.17 5.97 2.59 44.99 0.12 6.09 16 4 H 0.06 2.02 8.08 -2.38 -0.02 2.00 16 5 C 0.12 3.88 5.23 86.38 0.45 4.33 16 6 N -0.71 -22.20 5.39 -463.06 -2.49 -24.69 16 7 C 0.52 15.63 7.83 87.66 0.69 16.31 16 8 O -0.58 -20.68 15.98 -3.05 -0.05 -20.73 16 9 C -0.13 -3.10 5.68 29.85 0.17 -2.93 16 10 C 0.00 0.07 5.13 29.85 0.15 0.23 16 11 C 0.18 4.69 7.60 88.34 0.67 5.37 16 12 N -0.51 -14.31 11.29 -303.83 -3.43 -17.74 16 13 C -0.06 -1.27 11.24 83.39 0.94 -0.34 16 14 C -0.03 -0.66 5.70 24.79 0.14 -0.52 16 15 C 0.02 0.23 0.93 -52.93 -0.05 0.18 16 16 C -0.14 -1.31 8.35 71.98 0.60 -0.71 16 17 C -0.14 -1.79 8.06 71.98 0.58 -1.21 16 18 C -0.14 -1.48 8.35 71.98 0.60 -0.88 16 19 O -0.20 -4.93 10.24 -3.75 -0.04 -4.97 16 20 N -0.74 -33.09 4.50 -322.94 -1.45 -34.55 16 21 C -0.30 -15.30 7.75 84.03 0.65 -14.64 16 22 H 0.07 3.51 7.32 -2.91 -0.02 3.49 16 23 C -0.11 -5.77 5.50 84.86 0.47 -5.30 16 24 N -0.98 -59.18 13.70 21.65 0.30 -58.88 16 25 Si 1.12 50.17 29.92 68.60 2.05 52.22 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 27 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 28 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 29 H 0.05 1.98 5.99 -2.38 -0.01 1.96 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.41 13.06 8.14 -92.71 -0.75 12.31 16 37 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.11 2.69 8.10 -2.38 -0.02 2.67 16 40 H 0.11 2.36 8.10 -2.39 -0.02 2.35 16 41 H 0.20 3.36 8.06 -2.91 -0.02 3.33 16 42 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.07 0.59 8.02 -2.39 -0.02 0.57 16 45 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.07 0.67 8.02 -2.39 -0.02 0.65 16 49 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.36 17.51 6.63 -92.71 -0.61 16.90 16 52 H 0.24 14.68 6.77 -92.71 -0.63 14.06 16 Total: -1.00 -68.43 422.44 1.57 -66.86 By element: Atomic # 1 Polarization: 45.05 SS G_CDS: -0.32 Total: 44.72 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 7.01 Total: -2.25 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -7.08 Total: -135.86 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.09 Total: -25.70 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.05 Total: 52.22 kcal Total: -68.43 1.57 -66.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698601736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.499 kcal (2) G-P(sol) polarization free energy of solvation -68.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds