Wall clock time and date at job start Tue Mar 31 2020 20:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.52998 * 109.47705 * 174.99884 * 3 2 1 6 6 N 1.46490 * 109.47689 * 175.00086 * 5 3 2 7 7 C 1.34778 * 120.00450 * 180.02562 * 6 5 3 8 8 O 1.21277 * 119.99660 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00409 * 179.97438 * 7 6 5 10 10 C 1.52990 * 109.47434 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47434 * 179.97438 * 10 9 7 12 12 N 1.30253 * 125.61754 * 90.02297 * 11 10 9 13 13 C 1.34480 * 108.70047 * 179.97438 * 12 11 10 14 14 C 1.34330 * 107.66766 * 0.02562 * 13 12 11 15 15 C 1.50701 * 126.44181 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47235 * 60.00189 * 15 14 13 17 17 C 1.52999 * 109.47096 * 180.02562 * 15 14 13 18 18 C 1.53004 * 109.47209 * 300.00189 * 15 14 13 19 19 O 1.33964 * 125.61845 * 269.72015 * 11 10 9 20 20 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 21 21 C 1.36936 * 120.00357 * 84.99193 * 20 3 2 22 22 H 1.08005 * 119.99682 * 0.02562 * 21 20 3 23 23 C 1.38810 * 120.00266 * 180.02562 * 21 20 3 24 24 N 1.31621 * 120.00199 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99960 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47390 * 60.00005 * 25 23 21 27 27 H 1.48503 * 109.47082 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47090 * 299.99871 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09003 * 109.47087 * 295.00778 * 5 3 2 35 35 H 1.09009 * 109.46938 * 55.00167 * 5 3 2 36 36 H 0.97004 * 120.00027 * 0.02562 * 6 5 3 37 37 H 1.09003 * 109.47071 * 300.00711 * 9 7 6 38 38 H 1.09000 * 109.46745 * 60.00102 * 9 7 6 39 39 H 1.09003 * 109.47651 * 300.00452 * 10 9 7 40 40 H 1.09009 * 109.47044 * 60.00248 * 10 9 7 41 41 H 1.08001 * 126.16377 * 180.02562 * 13 12 11 42 42 H 1.08994 * 109.47060 * 59.99936 * 16 15 14 43 43 H 1.08999 * 109.46957 * 179.97438 * 16 15 14 44 44 H 1.09004 * 109.46962 * 299.99667 * 16 15 14 45 45 H 1.08997 * 109.47448 * 59.99951 * 17 15 14 46 46 H 1.08999 * 109.47331 * 179.97438 * 17 15 14 47 47 H 1.09002 * 109.47166 * 299.99819 * 17 15 14 48 48 H 1.08996 * 109.47100 * 60.00120 * 18 15 14 49 49 H 1.08999 * 109.47252 * 180.02562 * 18 15 14 50 50 H 1.09006 * 109.46941 * 300.00051 * 18 15 14 51 51 H 0.97001 * 120.00250 * 264.99821 * 20 3 2 52 52 H 0.96993 * 120.00113 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0631 2.8166 0.0060 7 6 5.3858 3.0628 0.0859 8 8 6.1636 2.1480 0.2564 9 6 5.8984 4.4745 -0.0379 10 6 7.4232 4.4764 0.0880 11 6 7.9358 5.8880 -0.0364 12 7 8.1076 6.7223 0.9491 13 6 8.5777 7.8816 0.4556 14 6 8.6930 7.7412 -0.8754 15 6 9.1819 8.7847 -1.8465 16 6 10.6132 9.1869 -1.4852 17 6 9.1550 8.2132 -3.2655 18 6 8.2734 10.0137 -1.7749 19 8 8.2954 6.4897 -1.1780 20 7 1.6525 2.0975 -1.2517 21 6 0.4157 2.6734 -1.3688 22 1 -0.2740 2.6451 -0.5381 23 6 0.0483 3.2937 -2.5550 24 7 0.8885 3.3278 -3.5676 25 14 -1.6386 4.0800 -2.7144 26 1 -1.7865 5.1462 -1.6914 27 1 -1.7838 4.6699 -4.0694 28 1 -2.6870 3.0484 -2.5093 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8499 1.0375 1.0960 35 1 3.9955 0.8310 -0.6660 36 1 3.4411 3.5483 -0.1308 37 1 5.6130 4.8810 -1.0082 38 1 5.4682 5.0879 0.7538 39 1 7.7082 4.0701 1.0585 40 1 7.8538 3.8628 -0.7034 41 1 8.8191 8.7660 1.0265 42 1 11.2604 8.3114 -1.5363 43 1 10.9670 9.9413 -2.1880 44 1 10.6320 9.5942 -0.4743 45 1 8.1352 7.9270 -3.5227 46 1 9.5082 8.9681 -3.9680 47 1 9.8020 7.3375 -3.3169 48 1 8.2922 10.4210 -0.7641 49 1 8.6267 10.7683 -2.4776 50 1 7.2536 9.7272 -2.0323 51 1 2.2720 2.1232 -1.9977 52 1 0.6319 3.7615 -4.3963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698601737.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:48 Heat of formation + Delta-G solvation = -55.214252 kcal Electronic energy + Delta-G solvation = -29019.719864 eV Core-core repulsion = 25019.393477 eV Total energy + Delta-G solvation = -4000.326388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.41834 -40.77237 -38.32818 -38.02346 -35.87691 -35.22532 -34.69048 -34.10215 -31.50519 -30.38864 -29.22705 -28.28626 -28.20598 -26.44156 -25.30280 -23.85593 -23.70885 -22.24820 -21.62878 -21.00667 -20.63638 -19.23893 -18.40208 -17.77821 -17.51826 -17.05500 -16.86949 -16.57995 -16.11539 -15.82449 -15.46821 -15.10415 -15.00238 -14.82995 -14.68359 -14.53666 -14.36122 -14.16865 -13.92311 -13.61431 -13.39408 -13.18632 -13.14370 -12.96029 -12.77960 -12.73716 -12.64787 -12.61697 -12.37280 -12.33477 -12.21027 -12.12980 -12.02929 -11.92701 -11.86777 -11.60986 -11.44298 -11.32250 -10.99766 -10.82016 -9.98326 -9.65821 -8.96162 -7.86775 -5.13425 0.40413 1.51091 1.51895 1.57057 1.57279 1.63634 1.65784 2.31954 2.60591 3.03622 3.47104 3.55618 3.72017 3.79451 3.90407 3.91700 3.95914 3.98350 4.02838 4.15293 4.20803 4.40853 4.46392 4.50519 4.58476 4.60954 4.70977 4.71192 4.76231 4.78970 4.81200 4.84566 4.90187 4.91236 4.93811 5.00766 5.07104 5.12111 5.15493 5.22381 5.23794 5.30514 5.34188 5.35673 5.50194 5.60024 5.62554 5.73252 6.33648 6.60452 6.71206 7.24871 7.41722 8.13919 8.38676 9.35935 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.002345 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.100709 B =11935.107132 C =13756.866570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.164 3.836 4 H 0.059 0.941 5 C 0.122 3.878 6 N -0.711 5.711 7 C 0.516 3.484 8 O -0.582 6.582 9 C -0.127 4.127 10 C 0.002 3.998 11 C 0.180 3.820 12 N -0.500 5.500 13 C -0.053 4.053 14 C -0.036 4.036 15 C 0.017 3.983 16 C -0.136 4.136 17 C -0.146 4.146 18 C -0.139 4.139 19 O -0.208 6.208 20 N -0.727 5.727 21 C -0.215 4.215 22 H 0.079 0.921 23 C -0.073 4.073 24 N -0.968 5.968 25 Si 0.958 3.042 26 H -0.279 1.279 27 H -0.304 1.304 28 H -0.283 1.283 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.411 0.589 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.204 0.796 42 H 0.051 0.949 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.087 0.913 47 H 0.051 0.949 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.046 0.954 51 H 0.373 0.627 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.111 10.968 6.527 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.077 0.923 5 C -0.002 4.002 6 N -0.362 5.362 7 C 0.304 3.696 8 O -0.464 6.464 9 C -0.168 4.168 10 C -0.036 4.036 11 C -0.026 4.026 12 N -0.229 5.229 13 C -0.191 4.191 14 C -0.089 4.089 15 C 0.016 3.984 16 C -0.193 4.193 17 C -0.203 4.203 18 C -0.196 4.196 19 O -0.095 6.095 20 N -0.368 5.368 21 C -0.347 4.347 22 H 0.097 0.903 23 C -0.265 4.265 24 N -0.619 5.619 25 Si 0.789 3.211 26 H -0.205 1.205 27 H -0.231 1.231 28 H -0.210 1.210 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.247 0.753 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.220 0.780 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.109 0.891 50 H 0.065 0.935 51 H 0.205 0.795 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.332 10.208 7.291 21.395 hybrid contribution -1.104 0.648 -1.484 1.960 sum 16.228 10.855 5.807 20.369 Atomic orbital electron populations 1.21702 0.96046 1.00553 1.01773 1.21990 0.96573 0.97442 1.01042 1.20721 0.91079 0.93213 0.89479 0.92328 1.21564 0.94238 0.82949 1.01490 1.45988 1.07371 1.10655 1.72153 1.20712 0.82138 0.91314 0.75476 1.90662 1.56539 1.47630 1.51529 1.21536 0.95257 0.93914 1.06095 1.19708 0.93818 0.83774 1.06311 1.26345 1.00160 0.97984 0.78100 1.70437 1.17603 1.02407 1.32460 1.23380 1.05284 0.98025 0.92388 1.24076 1.03421 0.84292 0.97115 1.19350 0.97213 0.90008 0.91803 1.21931 0.92058 1.02066 1.03279 1.21891 1.01938 1.01613 0.94868 1.21951 0.98307 0.95508 1.03827 1.84414 1.63008 1.24741 1.37293 1.42563 1.15748 1.66067 1.12379 1.19452 0.92535 1.25304 0.97414 0.90283 1.25353 1.00886 1.03575 0.96682 1.69792 1.36838 1.51021 1.04268 0.85441 0.81177 0.78529 0.75997 1.20510 1.23091 1.20985 0.93343 0.93166 0.92929 0.90646 0.93636 0.90144 0.93074 0.75277 0.87891 0.86884 0.86865 0.88245 0.77967 0.93028 0.89132 0.91102 0.93460 0.89409 0.92957 0.91062 0.89121 0.93451 0.79544 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.18 71.98 0.66 -4.12 16 2 C -0.13 -4.16 5.61 30.59 0.17 -3.99 16 3 C 0.16 5.69 2.59 44.99 0.12 5.81 16 4 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 5 C 0.12 3.90 5.23 86.38 0.45 4.35 16 6 N -0.71 -22.21 5.39 -463.07 -2.49 -24.71 16 7 C 0.52 15.74 7.83 87.66 0.69 16.43 16 8 O -0.58 -20.90 15.98 -3.02 -0.05 -20.95 16 9 C -0.13 -3.12 5.68 29.85 0.17 -2.95 16 10 C 0.00 0.06 5.13 29.85 0.15 0.21 16 11 C 0.18 4.69 7.60 88.34 0.67 5.36 16 12 N -0.50 -13.37 11.29 -303.83 -3.43 -16.80 16 13 C -0.05 -1.14 11.24 83.39 0.94 -0.20 16 14 C -0.04 -0.76 5.70 24.79 0.14 -0.62 16 15 C 0.02 0.24 0.93 -52.93 -0.05 0.19 16 16 C -0.14 -1.38 8.35 71.98 0.60 -0.78 16 17 C -0.15 -2.19 8.06 71.98 0.58 -1.61 16 18 C -0.14 -1.60 8.35 71.98 0.60 -1.00 16 19 O -0.21 -5.39 10.24 -3.73 -0.04 -5.42 16 20 N -0.73 -32.30 4.51 -322.96 -1.46 -33.76 16 21 C -0.22 -10.66 7.75 84.03 0.65 -10.01 16 22 H 0.08 3.77 7.32 -2.91 -0.02 3.75 16 23 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 24 N -0.97 -56.21 13.06 21.65 0.28 -55.93 16 25 Si 0.96 44.09 29.55 68.60 2.03 46.12 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 28 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 29 H 0.05 1.97 5.99 -2.39 -0.01 1.96 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.41 13.07 8.14 -92.71 -0.75 12.31 16 37 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.11 2.70 8.10 -2.39 -0.02 2.68 16 40 H 0.10 2.38 8.10 -2.38 -0.02 2.37 16 41 H 0.20 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 0.61 8.02 -2.38 -0.02 0.59 16 45 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.07 0.70 8.02 -2.39 -0.02 0.68 16 49 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 51 H 0.37 18.49 7.80 -92.71 -0.72 17.76 16 52 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -65.31 424.15 1.28 -64.03 By element: Atomic # 1 Polarization: 44.36 SS G_CDS: -0.57 Total: 43.79 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 7.01 Total: 3.63 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -7.10 Total: -131.19 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.09 Total: -26.37 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -65.31 1.28 -64.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698601737.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.816 kcal (2) G-P(sol) polarization free energy of solvation -65.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds