Wall clock time and date at job start Tue Mar 31 2020 20:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46992 * 2 1 4 4 H 1.08993 * 109.49702 * 304.93334 * 3 2 1 5 5 C 1.53194 * 109.49627 * 64.99747 * 3 2 1 6 6 N 1.46931 * 108.77629 * 174.58364 * 5 3 2 7 7 C 1.34779 * 120.62785 * 126.41058 * 6 5 3 8 8 O 1.21278 * 120.00079 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99583 * 179.97438 * 7 6 5 10 10 C 1.53007 * 109.46730 * 180.02562 * 9 7 6 11 11 C 1.53002 * 117.49489 * 243.74158 * 10 9 7 12 12 C 1.53003 * 117.49605 * 175.08892 * 10 9 7 13 13 C 1.46922 * 118.74046 * 306.39561 * 6 5 3 14 14 C 1.53196 * 108.77606 * 53.60492 * 13 6 5 15 15 C 1.53037 * 109.31040 * 305.36550 * 14 13 6 16 16 H 1.09006 * 109.46385 * 301.34352 * 15 14 13 17 17 N 1.46907 * 109.45807 * 181.38938 * 15 14 13 18 18 C 1.46896 * 111.00291 * 85.00061 * 17 15 14 19 19 C 1.50696 * 109.47156 * 179.97438 * 18 17 15 20 20 O 1.21294 * 119.99826 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99938 * 179.97438 * 19 18 17 22 22 C 1.37095 * 120.00045 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99718 * 359.97438 * 22 21 19 24 24 C 1.38944 * 120.00287 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00186 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47108 * 60.00028 * 26 24 22 28 28 H 1.48500 * 109.47110 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47031 * 299.99989 * 26 24 22 30 30 H 1.09004 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47457 * 299.99746 * 1 2 3 32 32 H 1.08999 * 109.47124 * 60.00638 * 1 2 3 33 33 H 1.08994 * 109.47686 * 239.99504 * 2 1 3 34 34 H 1.09004 * 109.46784 * 119.99671 * 2 1 3 35 35 H 1.09000 * 109.58692 * 54.80480 * 5 3 2 36 36 H 1.08997 * 109.58800 * 294.37404 * 5 3 2 37 37 H 1.08998 * 109.47286 * 299.99487 * 9 7 6 38 38 H 1.08996 * 109.47447 * 60.00113 * 9 7 6 39 39 H 1.08995 * 115.55539 * 29.41229 * 10 9 7 40 40 H 1.08997 * 117.49872 * 0.02562 * 11 10 9 41 41 H 1.09003 * 117.49550 * 145.01577 * 11 10 9 42 42 H 1.08999 * 117.49756 * 214.97808 * 12 10 9 43 43 H 1.09002 * 117.49968 * 359.96957 * 12 10 9 44 44 H 1.08999 * 109.58543 * 293.81580 * 13 6 5 45 45 H 1.08996 * 109.58946 * 173.39111 * 13 6 5 46 46 H 1.08999 * 109.50112 * 65.32084 * 14 13 6 47 47 H 1.09004 * 109.49641 * 185.41325 * 14 13 6 48 48 H 1.00896 * 110.99554 * 321.04495 * 17 15 14 49 49 H 1.08995 * 109.47052 * 299.99951 * 18 17 15 50 50 H 1.09002 * 109.47355 * 59.99533 * 18 17 15 51 51 H 0.97001 * 119.99995 * 359.97438 * 21 19 18 52 52 H 0.97001 * 119.99887 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6349 2.1280 1.3088 6 7 2.2414 3.4657 1.3494 7 6 1.4814 4.5579 1.5637 8 8 0.2849 4.4421 1.7248 9 6 2.1184 5.9231 1.6032 10 6 1.0428 6.9805 1.8602 11 6 0.7915 8.0143 0.7607 12 6 1.5050 8.4265 2.0507 13 6 3.6920 3.5899 1.1523 14 6 4.0740 2.8881 -0.1547 15 6 3.5655 1.4450 -0.1216 16 1 3.9988 0.9268 0.7339 17 7 3.9589 0.7589 -1.3596 18 6 5.3194 0.2156 -1.2508 19 6 5.6868 -0.4797 -2.5363 20 8 4.8931 -0.5192 -3.4528 21 7 6.8972 -1.0578 -2.6677 22 6 7.2313 -1.6908 -3.8370 23 1 6.5243 -1.7266 -4.6527 24 6 8.4793 -2.2862 -3.9726 25 7 9.3393 -2.2430 -2.9800 26 14 8.9348 -3.1482 -5.5662 27 1 8.8767 -2.1772 -6.6882 28 1 10.3103 -3.6969 -5.4565 29 1 7.9792 -4.2561 -5.8203 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 1.9906 1.5398 2.1547 36 1 0.5495 2.2173 1.3538 37 1 2.8581 5.9559 2.4031 38 1 2.6057 6.1244 0.6492 39 1 0.1840 6.6458 2.4421 40 1 1.3922 7.9409 -0.1459 41 1 -0.2325 8.3600 0.6194 42 1 0.9501 9.0433 2.7576 43 1 2.5754 8.6245 1.9933 44 1 4.2154 3.1209 1.9855 45 1 3.9639 4.6438 1.0941 46 1 3.6219 3.4139 -0.9957 47 1 5.1584 2.8893 -0.2648 48 1 3.8777 1.3740 -2.1552 49 1 6.0212 1.0281 -1.0634 50 1 5.3611 -0.4976 -0.4276 51 1 7.5320 -1.0259 -1.9349 52 1 10.2107 -2.6584 -3.0748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699597290.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:02 Heat of formation + Delta-G solvation = -60.232774 kcal Electronic energy + Delta-G solvation = -29591.041468 eV Core-core repulsion = 25590.497461 eV Total energy + Delta-G solvation = -4000.544007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.64779 -38.86489 -38.01467 -37.19739 -35.18055 -34.45302 -33.82004 -31.33013 -30.96104 -30.46133 -28.84263 -26.73422 -24.82054 -24.26768 -23.33916 -22.71340 -21.58154 -21.21737 -20.28682 -19.41904 -19.04475 -17.89557 -17.46664 -16.55100 -16.07941 -15.95815 -15.42854 -15.09701 -14.92992 -14.71348 -14.40560 -14.34137 -13.90642 -13.89369 -13.77619 -13.57440 -13.47090 -12.99749 -12.85355 -12.60431 -12.26177 -12.22362 -11.97747 -11.85892 -11.72907 -11.66561 -11.57758 -11.44643 -11.19227 -11.03693 -10.73795 -10.68183 -10.55899 -10.45887 -10.37556 -10.35809 -10.22594 -9.92460 -9.51767 -8.88797 -8.47174 -8.03959 -7.96974 -6.43532 -3.84358 2.41184 2.71603 3.18741 3.24538 3.28952 3.45924 3.88886 4.04822 4.15580 4.27816 4.32127 4.42475 4.56794 4.66472 4.75894 4.77974 4.89955 5.00357 5.03178 5.11035 5.13580 5.21641 5.24380 5.26929 5.28536 5.30746 5.37532 5.44416 5.50962 5.52708 5.56553 5.63055 5.73769 5.76955 5.80842 5.87404 5.91952 5.96926 5.99699 6.03973 6.17674 6.25056 6.30556 6.40282 6.62766 7.15873 7.21303 7.53295 7.63385 7.95899 8.04357 8.59397 9.16145 9.52429 10.03953 10.74077 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017275 B = 0.002098 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.406034 B =13342.096471 C =14307.410130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.085 4.085 4 H 0.073 0.927 5 C 0.114 3.886 6 N -0.613 5.613 7 C 0.518 3.482 8 O -0.541 6.541 9 C -0.110 4.110 10 C -0.141 4.141 11 C -0.178 4.178 12 C -0.181 4.181 13 C 0.111 3.889 14 C -0.169 4.169 15 C 0.092 3.908 16 H 0.078 0.922 17 N -0.659 5.659 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.349 0.651 49 H 0.042 0.958 50 H 0.085 0.915 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.954 16.402 13.640 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.105 4.105 4 H 0.092 0.908 5 C -0.008 4.008 6 N -0.346 5.346 7 C 0.306 3.694 8 O -0.418 6.418 9 C -0.150 4.150 10 C -0.160 4.160 11 C -0.215 4.215 12 C -0.218 4.218 13 C -0.013 4.013 14 C -0.209 4.209 15 C -0.019 4.019 16 H 0.097 0.903 17 N -0.289 5.289 18 C -0.081 4.081 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.136 0.864 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.097 0.903 48 H 0.169 0.831 49 H 0.060 0.940 50 H 0.103 0.897 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.218 15.617 13.273 23.861 hybrid contribution 1.517 0.375 -0.416 1.617 sum -10.700 15.992 12.857 23.142 Atomic orbital electron populations 1.21839 0.96519 1.01372 1.01403 1.21428 0.94745 0.95126 1.03577 1.21475 0.94827 0.97111 0.97102 0.90829 1.21805 1.00043 0.81491 0.97488 1.48176 1.08119 1.06976 1.71338 1.20565 0.86939 0.86045 0.75832 1.90676 1.14928 1.86494 1.49700 1.21260 0.98437 0.91392 1.03908 1.22069 1.00842 0.89212 1.03851 1.23047 1.01855 1.03575 0.93040 1.23010 1.00896 0.97358 1.00508 1.21719 0.80136 1.01556 0.97875 1.22742 1.02015 0.98234 0.97909 1.21614 0.95113 0.91168 0.93963 0.90336 1.60154 1.24423 1.40355 1.04006 1.21696 0.89485 0.98571 0.98385 1.19824 0.83482 0.84914 0.89226 1.90529 1.50379 1.63842 1.41961 1.41860 1.13338 1.48620 1.16227 1.19647 0.99707 1.30237 0.93321 0.87998 1.25258 0.95689 0.98011 0.98983 1.69601 1.07830 1.45191 1.31727 0.85920 0.77412 0.79552 0.81352 1.19928 1.20983 1.19878 0.92906 0.93191 0.92888 0.89181 0.92551 0.91563 0.88645 0.88536 0.88762 0.86441 0.88800 0.88731 0.88683 0.88750 0.90972 0.89778 0.91082 0.90349 0.83076 0.93993 0.89685 0.77498 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.67 37.16 0.36 -1.28 16 2 C -0.11 -1.28 5.31 -26.73 -0.14 -1.42 16 3 C -0.09 -0.93 2.06 -90.50 -0.19 -1.12 16 4 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 5 C 0.11 1.17 5.32 -3.71 -0.02 1.15 16 6 N -0.61 -5.85 2.97 -172.77 -0.51 -6.36 16 7 C 0.52 5.56 7.70 -10.98 -0.08 5.47 16 8 O -0.54 -7.78 14.98 5.56 0.08 -7.69 16 9 C -0.11 -0.83 4.33 -27.88 -0.12 -0.95 16 10 C -0.14 -1.16 5.41 -90.61 -0.49 -1.65 16 11 C -0.18 -1.32 10.18 -26.70 -0.27 -1.59 16 12 C -0.18 -1.16 10.25 -26.70 -0.27 -1.43 16 13 C 0.11 0.81 6.34 -3.71 -0.02 0.79 16 14 C -0.17 -1.53 5.33 -26.61 -0.14 -1.67 16 15 C 0.09 1.02 1.89 -67.67 -0.13 0.89 16 16 H 0.08 0.85 7.80 -51.93 -0.40 0.44 16 17 N -0.66 -9.72 4.97 -107.95 -0.54 -10.26 16 18 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 19 C 0.44 10.06 7.82 -10.99 -0.09 9.97 16 20 O -0.58 -15.50 15.78 5.54 0.09 -15.41 16 21 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 22 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 23 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 26 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.50 6.70 -51.93 -0.35 0.15 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 1.12 5.72 -51.93 -0.30 0.82 16 37 H 0.10 0.55 7.94 -51.93 -0.41 0.13 16 38 H 0.09 0.60 7.43 -51.93 -0.39 0.21 16 39 H 0.12 1.18 7.31 -51.93 -0.38 0.80 16 40 H 0.09 0.64 8.03 -51.93 -0.42 0.23 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.46 5.93 -51.93 -0.31 0.15 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.69 7.43 -51.93 -0.39 0.31 16 48 H 0.35 5.51 8.18 -39.29 -0.32 5.19 16 49 H 0.04 0.61 7.41 -51.93 -0.39 0.23 16 50 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 51 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 52 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 410.81 15.07 6.19 6.19 Total: -1.00 -32.07 410.81 -9.83 -41.90 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -8.91 Total: 13.25 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.88 Total: 0.06 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.38 Total: -54.16 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.17 Total: -23.10 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.07 -9.83 -41.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699597290.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.333 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds