Wall clock time and date at job start Tue Mar 31 2020 20:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47295 * 2 1 4 4 H 1.08995 * 109.49516 * 54.93439 * 3 2 1 5 5 C 1.53625 * 109.65998 * 294.85337 * 3 2 1 6 6 N 1.46927 * 108.53928 * 294.84647 * 5 3 2 7 7 C 1.34784 * 120.62741 * 126.37030 * 6 5 3 8 8 O 1.21277 * 119.99939 * 359.71745 * 7 6 5 9 9 C 1.50697 * 119.99654 * 179.71845 * 7 6 5 10 10 C 1.53003 * 109.47004 * 180.02562 * 9 7 6 11 11 C 1.53001 * 117.51964 * 116.28325 * 10 9 7 12 12 C 1.52999 * 60.00190 * 107.47982 * 11 10 9 13 13 C 1.46924 * 118.74217 * 306.09374 * 6 5 3 14 14 C 1.53194 * 108.77283 * 53.85917 * 13 6 5 15 15 C 1.53034 * 109.31687 * 305.36802 * 14 13 6 16 16 H 1.09002 * 109.45794 * 301.34546 * 15 14 13 17 17 N 1.46899 * 109.46231 * 181.38415 * 15 14 13 18 18 C 1.46905 * 110.99686 * 85.00165 * 17 15 14 19 19 C 1.50705 * 109.46668 * 180.02562 * 18 17 15 20 20 O 1.21289 * 120.00069 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99623 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99491 * 179.97438 * 21 19 18 23 23 H 1.07993 * 120.00328 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99397 * 179.97438 * 22 21 19 25 25 N 1.31415 * 120.00169 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99771 * 179.97438 * 24 22 21 27 27 H 1.48492 * 109.47191 * 59.99685 * 26 24 22 28 28 H 1.48497 * 109.47077 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46999 * 299.99879 * 26 24 22 30 30 H 1.08994 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47241 * 300.00269 * 1 2 3 32 32 H 1.08997 * 109.46900 * 59.99650 * 1 2 3 33 33 H 1.08999 * 109.47002 * 240.00226 * 2 1 3 34 34 H 1.08998 * 109.47429 * 119.99803 * 2 1 3 35 35 H 1.08996 * 109.74147 * 175.11159 * 5 3 2 36 36 H 1.08997 * 109.66339 * 54.53885 * 5 3 2 37 37 H 1.08999 * 109.47487 * 59.99788 * 9 7 6 38 38 H 1.09005 * 109.47152 * 299.99767 * 9 7 6 39 39 H 1.09002 * 115.54973 * 330.58108 * 10 9 7 40 40 H 1.09001 * 117.49733 * 214.97413 * 11 10 9 41 41 H 1.08995 * 117.49577 * 359.97438 * 11 10 9 42 42 H 1.09004 * 117.50150 * 252.51496 * 12 11 10 43 43 H 1.09004 * 117.49681 * 107.48417 * 12 11 10 44 44 H 1.08999 * 109.59036 * 173.64932 * 13 6 5 45 45 H 1.09007 * 109.58593 * 293.93703 * 13 6 5 46 46 H 1.09000 * 109.49361 * 65.32037 * 14 13 6 47 47 H 1.08995 * 109.49503 * 185.41429 * 14 13 6 48 48 H 1.00895 * 111.00172 * 321.04963 * 17 15 14 49 49 H 1.09000 * 109.47025 * 299.99945 * 18 17 15 50 50 H 1.08991 * 109.47290 * 60.00219 * 18 17 15 51 51 H 0.96996 * 119.99462 * 359.97438 * 21 19 18 52 52 H 0.96998 * 119.99953 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6048 1.9823 0.8410 5 6 1.6391 2.1325 -1.3127 6 7 2.3368 1.4679 -2.4219 7 6 1.6493 0.9937 -3.4798 8 8 0.4427 1.1091 -3.5199 9 6 2.3800 0.3200 -4.6126 10 6 1.3739 -0.1212 -5.6776 11 6 1.4796 0.5247 -7.0606 12 6 1.9075 -0.9307 -6.8612 13 6 3.7987 1.3355 -2.3589 14 6 4.1759 0.6594 -1.0369 15 6 3.5653 1.4450 0.1257 16 1 3.9299 2.4719 0.1013 17 7 3.9526 0.8185 1.3967 18 6 5.2662 1.3014 1.8429 19 6 5.6292 0.6376 3.1463 20 8 4.8683 -0.1589 3.6538 21 7 6.7990 0.9300 3.7485 22 6 7.1290 0.3265 4.9345 23 1 6.4514 -0.3828 5.3863 24 6 8.3353 0.6275 5.5551 25 7 9.1595 1.4910 5.0055 26 14 8.7846 -0.1942 7.1714 27 1 8.8366 -1.6659 6.9808 28 1 10.1124 0.2943 7.6226 29 1 7.7617 0.1365 8.1959 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.9254 3.1837 -1.2785 36 1 0.5618 2.0495 -1.4565 37 1 2.9139 -0.5513 -4.2334 38 1 3.0914 1.0189 -5.0527 39 1 0.3768 -0.3640 -5.3104 40 1 0.5519 0.7068 -7.6032 41 1 2.2657 1.2644 -7.2118 42 1 2.9753 -1.1486 -6.8813 43 1 1.2613 -1.7061 -7.2727 44 1 4.1468 0.7265 -3.1931 45 1 4.2576 2.3229 -2.4107 46 1 3.7925 -0.3609 -1.0278 47 1 5.2609 0.6418 -0.9341 48 1 3.9437 -0.1876 1.3214 49 1 6.0170 1.0592 1.0907 50 1 5.2278 2.3816 1.9832 51 1 7.4073 1.5673 3.3428 52 1 10.0013 1.7014 5.4389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699597292.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:04 Heat of formation + Delta-G solvation = -76.642149 kcal Electronic energy + Delta-G solvation = -29845.829972 eV Core-core repulsion = 25844.574401 eV Total energy + Delta-G solvation = -4001.255571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.57581 -40.19928 -39.37219 -37.85763 -36.29515 -35.74260 -34.97393 -33.25382 -31.94789 -31.21742 -29.80076 -28.16456 -26.28678 -25.04187 -24.38497 -23.31352 -23.20536 -22.11069 -21.09638 -20.57507 -19.91861 -19.28895 -18.34981 -17.65554 -17.11272 -16.95423 -16.64267 -16.28536 -16.12148 -15.96593 -15.61987 -15.54007 -15.39791 -15.07656 -14.82614 -14.34541 -14.25378 -14.06276 -13.84191 -13.49823 -13.47484 -13.29389 -13.17021 -13.04949 -12.86349 -12.69039 -12.48406 -12.42008 -12.34842 -12.30770 -12.13921 -12.10792 -11.58657 -11.49616 -11.48056 -11.27148 -11.17124 -10.93967 -10.64394 -10.31076 -9.99906 -9.61634 -9.19982 -8.45566 -5.93893 1.40155 1.42247 1.52745 1.68220 2.03606 2.07995 2.29905 2.91983 2.95254 3.22011 3.52151 3.53794 3.72931 3.78437 3.88444 4.01610 4.06172 4.08352 4.14299 4.19220 4.33505 4.39959 4.44209 4.47971 4.53596 4.58212 4.62836 4.64393 4.65945 4.72584 4.76505 4.77953 4.81720 4.85357 4.95930 4.99899 5.04942 5.09199 5.22163 5.28181 5.28699 5.35343 5.38424 5.41914 5.45153 5.63542 5.93843 6.17306 6.43427 6.47770 6.62241 7.14357 7.23266 7.58707 8.14514 8.71423 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021855 B = 0.002037 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.862812 B =13744.606199 C =14346.667154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.082 4.082 4 H 0.078 0.922 5 C 0.117 3.883 6 N -0.606 5.606 7 C 0.512 3.488 8 O -0.583 6.583 9 C -0.103 4.103 10 C -0.159 4.159 11 C -0.181 4.181 12 C -0.168 4.168 13 C 0.112 3.888 14 C -0.165 4.165 15 C 0.096 3.904 16 H 0.090 0.910 17 N -0.676 5.676 18 C 0.067 3.933 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.343 0.657 49 H 0.071 0.929 50 H 0.103 0.897 51 H 0.397 0.603 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.550 1.582 -24.041 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.101 4.101 4 H 0.096 0.904 5 C -0.007 4.007 6 N -0.339 5.339 7 C 0.302 3.698 8 O -0.463 6.463 9 C -0.142 4.142 10 C -0.178 4.178 11 C -0.217 4.217 12 C -0.205 4.205 13 C -0.011 4.011 14 C -0.205 4.205 15 C -0.014 4.014 16 H 0.108 0.892 17 N -0.307 5.307 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.512 6.512 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.114 0.886 44 H 0.128 0.872 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.162 0.838 49 H 0.088 0.912 50 H 0.121 0.879 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.825 1.645 -23.254 25.298 hybrid contribution 0.949 -0.550 0.467 1.192 sum -8.876 1.094 -22.787 24.479 Atomic orbital electron populations 1.21757 0.96103 1.01278 1.01385 1.21409 0.95613 0.96525 1.01014 1.21513 0.94988 0.96633 0.97003 0.90360 1.21742 0.98238 0.96041 0.84631 1.48177 1.08415 1.57771 1.19489 1.21113 0.87391 0.77681 0.83619 1.90657 1.16299 1.59275 1.80106 1.21284 0.98004 1.02039 0.92879 1.21999 1.00023 1.06194 0.89594 1.23114 1.03491 0.96646 0.98495 1.23081 1.02537 0.94288 1.00593 1.21888 0.78324 1.02597 0.98259 1.22678 1.01877 1.00382 0.95522 1.21627 0.94664 0.98845 0.86282 0.89217 1.60153 1.27642 1.12332 1.30579 1.21553 0.91635 1.00477 0.92819 1.20990 0.82101 0.85599 0.88896 1.90497 1.52078 1.40048 1.68550 1.41925 1.17766 1.40182 1.21198 1.19606 1.03557 1.23469 0.99722 0.90494 1.26005 0.95239 0.97321 1.02668 1.69657 1.11146 1.33957 1.41231 0.85020 0.77626 0.78407 0.77479 1.19714 1.19460 1.19936 0.93264 0.92835 0.93006 0.92483 0.92753 0.90180 0.90148 0.86876 0.86468 0.89296 0.89248 0.87622 0.87070 0.88570 0.87239 0.89246 0.91538 0.89669 0.83810 0.91159 0.87904 0.76921 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.68 71.98 0.70 -2.71 16 2 C -0.11 -2.48 4.68 30.60 0.14 -2.34 16 3 C -0.08 -1.69 2.38 -10.57 -0.03 -1.71 16 4 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 5 C 0.12 2.17 5.73 86.51 0.50 2.66 16 6 N -0.61 -9.81 2.32 -818.06 -1.90 -11.71 16 7 C 0.51 9.91 7.70 87.66 0.67 10.59 16 8 O -0.58 -16.31 14.98 -3.02 -0.05 -16.35 16 9 C -0.10 -1.26 4.33 29.85 0.13 -1.13 16 10 C -0.16 -2.42 5.41 -10.79 -0.06 -2.48 16 11 C -0.18 -2.23 10.18 30.59 0.31 -1.92 16 12 C -0.17 -1.82 10.25 30.60 0.31 -1.50 16 13 C 0.11 1.19 6.34 86.36 0.55 1.74 16 14 C -0.16 -2.48 4.99 30.67 0.15 -2.33 16 15 C 0.10 1.91 2.13 44.94 0.10 2.00 16 16 H 0.09 1.63 7.80 -2.39 -0.02 1.61 16 17 N -0.68 -19.53 5.42 -495.44 -2.69 -22.22 16 18 C 0.07 2.12 5.96 85.56 0.51 2.63 16 19 C 0.44 20.16 7.82 87.66 0.69 20.84 16 20 O -0.63 -34.23 15.78 -3.06 -0.05 -34.28 16 21 N -0.57 -28.76 5.29 -306.98 -1.62 -30.38 16 22 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 23 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -48.82 13.05 21.67 0.28 -48.54 16 26 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 29 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.26 6.48 -2.39 -0.02 1.24 16 33 H 0.06 1.28 6.13 -2.39 -0.01 1.27 16 34 H 0.05 1.46 7.00 -2.39 -0.02 1.44 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.82 5.24 -2.39 -0.01 1.80 16 37 H 0.11 1.02 7.69 -2.39 -0.02 1.00 16 38 H 0.12 0.87 7.68 -2.38 -0.02 0.85 16 39 H 0.09 1.87 7.31 -2.39 -0.02 1.86 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.11 1.02 8.03 -2.39 -0.02 1.00 16 42 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.11 0.66 5.93 -2.39 -0.01 0.64 16 45 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.07 1.14 6.45 -2.39 -0.02 1.13 16 47 H 0.08 1.20 7.43 -2.39 -0.02 1.18 16 48 H 0.34 10.78 7.33 -89.70 -0.66 10.12 16 49 H 0.07 1.85 7.41 -2.39 -0.02 1.83 16 50 H 0.10 2.92 8.05 -2.39 -0.02 2.90 16 51 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 52 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -71.67 404.93 1.51 -70.16 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: -0.45 Total: 42.48 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 5.95 Total: 6.20 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -5.93 Total: -112.84 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -0.09 Total: -50.63 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -71.67 1.51 -70.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699597292.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.480 kcal (2) G-P(sol) polarization free energy of solvation -71.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds