Wall clock time and date at job start Tue Mar 31 2020 20:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46998 * 2 1 4 4 H 1.09001 * 109.52568 * 305.08458 * 3 2 1 5 5 C 1.53199 * 109.50739 * 65.15989 * 3 2 1 6 6 N 1.46920 * 108.76511 * 65.30000 * 5 3 2 7 7 C 1.34770 * 120.63560 * 233.64065 * 6 5 3 8 8 O 1.21281 * 119.99630 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00442 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47222 * 179.97438 * 9 7 6 11 11 C 1.52998 * 117.50076 * 243.62002 * 10 9 7 12 12 C 1.52996 * 60.00057 * 252.51028 * 11 10 9 13 13 C 1.46931 * 118.73560 * 53.61575 * 6 5 3 14 14 C 1.53184 * 108.77826 * 306.39254 * 13 6 5 15 15 C 1.53035 * 109.49845 * 185.00325 * 3 2 1 16 16 H 1.09004 * 109.46076 * 181.40576 * 15 3 2 17 17 N 1.46905 * 109.46009 * 61.43707 * 15 3 2 18 18 C 1.46892 * 110.99935 * 154.97366 * 17 15 3 19 19 C 1.50706 * 109.47095 * 180.02562 * 18 17 15 20 20 O 1.21292 * 119.99870 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00150 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99970 * 179.97438 * 21 19 18 23 23 H 1.08004 * 120.00455 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00240 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00367 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 119.99822 * 0.26929 * 24 22 21 27 27 H 1.48500 * 109.47088 * 269.73243 * 26 24 22 28 28 H 1.48505 * 109.47152 * 29.72720 * 26 24 22 29 29 H 1.48494 * 109.47142 * 149.72720 * 26 24 22 30 30 H 1.08991 * 109.47777 * 59.99568 * 1 2 3 31 31 H 1.09005 * 109.47188 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46935 * 299.99411 * 1 2 3 33 33 H 1.09002 * 109.46462 * 240.00347 * 2 1 3 34 34 H 1.08991 * 109.47305 * 120.00675 * 2 1 3 35 35 H 1.09001 * 109.58510 * 305.52445 * 5 3 2 36 36 H 1.09001 * 109.59852 * 185.09240 * 5 3 2 37 37 H 1.09005 * 109.46802 * 299.99798 * 9 7 6 38 38 H 1.08999 * 109.47324 * 59.99295 * 9 7 6 39 39 H 1.08999 * 115.55270 * 29.32829 * 10 9 7 40 40 H 1.09007 * 117.49648 * 0.02562 * 11 10 9 41 41 H 1.08998 * 117.50359 * 145.01574 * 11 10 9 42 42 H 1.08998 * 117.49631 * 252.50882 * 12 11 10 43 43 H 1.08997 * 117.49906 * 107.48731 * 12 11 10 44 44 H 1.09001 * 109.58383 * 186.60107 * 13 6 5 45 45 H 1.08999 * 109.69969 * 66.25020 * 13 6 5 46 46 H 1.09004 * 109.49891 * 294.68497 * 14 13 6 47 47 H 1.09000 * 109.49797 * 174.58806 * 14 13 6 48 48 H 1.00904 * 110.99696 * 31.01798 * 17 15 3 49 49 H 1.08993 * 109.47666 * 60.00130 * 18 17 15 50 50 H 1.09000 * 109.47198 * 299.99775 * 18 17 15 51 51 H 0.96999 * 120.00043 * 359.97438 * 21 19 18 52 52 H 0.97005 * 120.00032 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 1.6386 2.1270 1.3105 6 7 2.3365 1.4665 2.4218 7 6 1.6490 0.9909 3.4788 8 8 0.4424 1.1066 3.5191 9 6 2.3793 0.3153 4.6108 10 6 1.3730 -0.1272 5.6750 11 6 1.4806 0.5152 7.0594 12 6 1.9059 -0.9404 6.8563 13 6 3.7985 1.3338 2.3586 14 6 4.1757 0.6586 1.0364 15 6 3.5652 1.4451 -0.1258 16 1 3.9299 2.4720 -0.1006 17 7 3.9524 0.8193 -1.3972 18 6 5.2664 1.3017 -1.8427 19 6 5.6288 0.6397 -3.1471 20 8 4.8675 -0.1560 -3.6554 21 7 6.7993 0.9311 -3.7484 22 6 7.1292 0.3285 -4.9348 23 1 6.4514 -0.3801 -5.3875 24 6 8.3361 0.6285 -5.5545 25 7 8.6526 0.0505 -6.6914 26 14 9.5127 1.8473 -4.7671 27 1 9.2111 3.2153 -5.2598 28 1 9.3532 1.8065 -3.2912 29 1 10.9088 1.4890 -5.1243 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 0.5613 2.0407 1.4527 36 1 1.9214 3.1791 1.2750 37 1 2.9129 -0.5557 4.2303 38 1 3.0910 1.0132 5.0519 39 1 0.3754 -0.3677 5.3076 40 1 2.2680 1.2533 7.2119 41 1 0.5536 0.6976 7.6030 42 1 1.2587 -1.7157 7.2663 43 1 2.9733 -1.1602 6.8754 44 1 4.1464 0.7242 3.1926 45 1 4.2595 2.3202 2.4098 46 1 3.7920 -0.3617 1.0264 47 1 5.2607 0.6408 0.9335 48 1 3.2508 0.9752 -2.1054 49 1 6.0169 1.0585 -1.0906 50 1 5.2287 2.3821 -1.9821 51 1 7.4083 1.5672 -3.3417 52 1 9.4950 0.2602 -7.1242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699597294.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:08 Heat of formation + Delta-G solvation = -48.430608 kcal Electronic energy + Delta-G solvation = -29905.408933 eV Core-core repulsion = 25905.376706 eV Total energy + Delta-G solvation = -4000.032227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.81786 -38.95934 -38.20650 -37.21689 -35.20636 -34.19663 -33.81029 -31.69789 -31.14065 -30.52730 -29.06106 -26.93857 -24.83865 -24.07235 -23.47620 -22.73112 -22.09194 -21.43471 -19.94607 -19.42264 -18.58459 -18.24343 -17.51264 -16.61208 -16.08143 -15.99357 -15.55310 -15.29961 -15.09358 -14.83940 -14.76069 -14.44217 -14.12393 -13.89175 -13.64830 -13.42920 -13.36732 -13.10875 -12.81869 -12.59879 -12.39105 -12.32910 -12.13317 -11.97675 -11.87735 -11.78588 -11.75289 -11.39853 -11.38023 -11.19057 -10.72050 -10.71454 -10.62087 -10.58541 -10.38894 -10.28477 -9.99358 -9.90851 -9.59237 -8.88467 -8.59678 -8.21981 -8.16065 -6.32811 -3.84340 2.40969 2.69884 3.00137 3.04230 3.12949 3.45124 3.72156 4.00187 4.08351 4.14169 4.30611 4.45888 4.53242 4.56489 4.74210 4.74998 4.77804 4.87095 4.98323 5.04080 5.12122 5.17937 5.18656 5.26135 5.28144 5.29550 5.37969 5.38359 5.45161 5.53234 5.54418 5.55280 5.64109 5.67524 5.75170 5.77117 5.85277 5.87517 5.91731 5.95948 6.12027 6.16508 6.22749 6.35266 6.45229 7.09638 7.14932 7.54435 7.56936 7.95257 8.12812 8.57929 8.93334 9.40605 9.80944 10.80290 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019503 B = 0.002172 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.353708 B =12890.832679 C =13647.100984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.103 4.103 4 H 0.081 0.919 5 C 0.116 3.884 6 N -0.608 5.608 7 C 0.519 3.481 8 O -0.540 6.540 9 C -0.111 4.111 10 C -0.140 4.140 11 C -0.179 4.179 12 C -0.180 4.180 13 C 0.106 3.894 14 C -0.127 4.127 15 C 0.093 3.907 16 H 0.043 0.957 17 N -0.661 5.661 18 C 0.048 3.952 19 C 0.450 3.550 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.277 1.277 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.352 0.648 49 H 0.086 0.914 50 H 0.043 0.957 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.293 5.433 25.746 28.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.122 4.122 4 H 0.099 0.901 5 C -0.007 4.007 6 N -0.342 5.342 7 C 0.308 3.692 8 O -0.417 6.417 9 C -0.150 4.150 10 C -0.159 4.159 11 C -0.216 4.216 12 C -0.217 4.217 13 C -0.017 4.017 14 C -0.166 4.166 15 C -0.017 4.017 16 H 0.061 0.939 17 N -0.294 5.294 18 C -0.084 4.084 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.231 5.231 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.202 1.202 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.173 0.827 49 H 0.104 0.896 50 H 0.061 0.939 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.044 4.355 25.514 28.141 hybrid contribution 1.174 1.903 0.079 2.237 sum -9.870 6.258 25.594 28.136 Atomic orbital electron populations 1.21862 0.96304 1.01566 1.01584 1.21477 0.95064 0.95222 1.03100 1.21726 0.95006 0.98135 0.97367 0.90066 1.21691 0.99069 0.95178 0.84788 1.48078 1.07572 1.58583 1.19967 1.20535 0.87716 0.78084 0.82900 1.90672 1.14301 1.57610 1.79132 1.21261 0.98238 1.01291 0.94238 1.22065 1.00786 1.04342 0.88680 1.23027 1.03177 0.95858 0.99539 1.23001 1.01672 0.94574 1.02499 1.21821 0.79623 1.01242 0.99047 1.21988 1.01327 1.00822 0.92446 1.21482 0.93882 0.95617 0.90756 0.93913 1.60090 1.03739 1.60755 1.04853 1.21753 0.92954 0.96816 0.96921 1.19722 0.83420 0.86469 0.86861 1.90570 1.50760 1.36968 1.66254 1.42211 1.17666 1.40770 1.22411 1.19428 1.04451 1.23213 0.96260 0.86298 1.25047 0.97226 0.97915 0.96037 1.69624 1.23959 1.42278 1.16252 0.86666 0.81604 0.81764 0.79305 1.19693 1.19499 1.20172 0.92999 0.93040 0.92456 0.90243 0.92090 0.88376 0.91783 0.88355 0.88908 0.86406 0.88913 0.88798 0.88655 0.88721 0.89590 0.91281 0.90064 0.90541 0.82718 0.89608 0.93874 0.79738 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.68 37.16 0.36 -1.31 16 2 C -0.11 -1.23 4.73 -26.73 -0.13 -1.36 16 3 C -0.10 -1.01 2.05 -90.50 -0.19 -1.19 16 4 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 5 C 0.12 1.08 5.70 -3.71 -0.02 1.05 16 6 N -0.61 -5.37 2.33 -172.77 -0.40 -5.77 16 7 C 0.52 5.23 7.70 -10.99 -0.08 5.14 16 8 O -0.54 -7.31 14.98 5.56 0.08 -7.23 16 9 C -0.11 -0.79 4.33 -27.88 -0.12 -0.91 16 10 C -0.14 -1.12 5.41 -90.62 -0.49 -1.61 16 11 C -0.18 -1.22 10.18 -26.73 -0.27 -1.49 16 12 C -0.18 -1.13 10.25 -26.73 -0.27 -1.41 16 13 C 0.11 0.74 6.34 -3.71 -0.02 0.72 16 14 C -0.13 -1.16 5.25 -26.62 -0.14 -1.30 16 15 C 0.09 0.97 2.15 -67.67 -0.15 0.82 16 16 H 0.04 0.42 7.80 -51.93 -0.40 0.02 16 17 N -0.66 -9.36 5.17 -107.95 -0.56 -9.92 16 18 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 19 C 0.45 9.90 7.82 -10.98 -0.09 9.82 16 20 O -0.56 -14.84 15.78 5.55 0.09 -14.75 16 21 N -0.59 -13.79 5.09 -10.96 -0.06 -13.84 16 22 C -0.30 -8.53 10.16 -14.94 -0.15 -8.68 16 23 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 24 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 25 N -0.88 -25.57 13.96 55.50 0.77 -24.80 16 26 Si 0.88 19.07 27.74 -169.99 -4.71 14.36 16 27 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 28 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 29 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.65 6.46 -51.93 -0.34 0.31 16 33 H 0.08 1.04 7.45 -51.93 -0.39 0.65 16 34 H 0.06 0.71 6.13 -51.93 -0.32 0.39 16 35 H 0.10 1.05 5.21 -51.93 -0.27 0.78 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.59 7.69 -51.93 -0.40 0.19 16 38 H 0.09 0.51 7.67 -51.93 -0.40 0.11 16 39 H 0.12 1.17 7.30 -51.93 -0.38 0.79 16 40 H 0.09 0.55 8.03 -51.93 -0.42 0.13 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.44 5.93 -51.93 -0.31 0.13 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.86 6.45 -51.93 -0.33 0.52 16 47 H 0.08 0.70 7.42 -51.93 -0.39 0.31 16 48 H 0.35 5.33 7.96 -39.29 -0.31 5.02 16 49 H 0.09 1.18 7.41 -51.93 -0.38 0.80 16 50 H 0.04 0.59 8.05 -51.93 -0.42 0.17 16 51 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 52 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 402.51 15.07 6.07 6.07 Total: -1.00 -33.40 402.51 -9.23 -42.63 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -8.63 Total: 13.23 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.89 Total: 0.02 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.24 Total: -54.34 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.17 Total: -21.97 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.40 -9.23 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699597294.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.801 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds