Wall clock time and date at job start Tue Mar 31 2020 20:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46998 * 2 1 4 4 H 1.09001 * 109.52568 * 305.08458 * 3 2 1 5 5 C 1.53199 * 109.50739 * 65.15989 * 3 2 1 6 6 N 1.46920 * 108.76511 * 65.30000 * 5 3 2 7 7 C 1.34770 * 120.63560 * 233.64065 * 6 5 3 8 8 O 1.21281 * 119.99630 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00442 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47222 * 179.97438 * 9 7 6 11 11 C 1.52998 * 117.50076 * 243.62002 * 10 9 7 12 12 C 1.52996 * 60.00057 * 252.51028 * 11 10 9 13 13 C 1.46931 * 118.73560 * 53.61575 * 6 5 3 14 14 C 1.53184 * 108.77826 * 306.39254 * 13 6 5 15 15 C 1.53035 * 109.49845 * 185.00325 * 3 2 1 16 16 H 1.09004 * 109.46076 * 181.40576 * 15 3 2 17 17 N 1.46905 * 109.46009 * 61.43707 * 15 3 2 18 18 C 1.46892 * 110.99935 * 154.97366 * 17 15 3 19 19 C 1.50706 * 109.47095 * 180.02562 * 18 17 15 20 20 O 1.21292 * 119.99870 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00150 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99970 * 179.97438 * 21 19 18 23 23 H 1.08004 * 120.00455 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00240 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00367 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 119.99822 * 0.26929 * 24 22 21 27 27 H 1.48500 * 109.47088 * 269.73243 * 26 24 22 28 28 H 1.48505 * 109.47152 * 29.72720 * 26 24 22 29 29 H 1.48494 * 109.47142 * 149.72720 * 26 24 22 30 30 H 1.08991 * 109.47777 * 59.99568 * 1 2 3 31 31 H 1.09005 * 109.47188 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46935 * 299.99411 * 1 2 3 33 33 H 1.09002 * 109.46462 * 240.00347 * 2 1 3 34 34 H 1.08991 * 109.47305 * 120.00675 * 2 1 3 35 35 H 1.09001 * 109.58510 * 305.52445 * 5 3 2 36 36 H 1.09001 * 109.59852 * 185.09240 * 5 3 2 37 37 H 1.09005 * 109.46802 * 299.99798 * 9 7 6 38 38 H 1.08999 * 109.47324 * 59.99295 * 9 7 6 39 39 H 1.08999 * 115.55270 * 29.32829 * 10 9 7 40 40 H 1.09007 * 117.49648 * 0.02562 * 11 10 9 41 41 H 1.08998 * 117.50359 * 145.01574 * 11 10 9 42 42 H 1.08998 * 117.49631 * 252.50882 * 12 11 10 43 43 H 1.08997 * 117.49906 * 107.48731 * 12 11 10 44 44 H 1.09001 * 109.58383 * 186.60107 * 13 6 5 45 45 H 1.08999 * 109.69969 * 66.25020 * 13 6 5 46 46 H 1.09004 * 109.49891 * 294.68497 * 14 13 6 47 47 H 1.09000 * 109.49797 * 174.58806 * 14 13 6 48 48 H 1.00904 * 110.99696 * 31.01798 * 17 15 3 49 49 H 1.08993 * 109.47666 * 60.00130 * 18 17 15 50 50 H 1.09000 * 109.47198 * 299.99775 * 18 17 15 51 51 H 0.96999 * 120.00043 * 359.97438 * 21 19 18 52 52 H 0.97005 * 120.00032 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 1.6386 2.1270 1.3105 6 7 2.3365 1.4665 2.4218 7 6 1.6490 0.9909 3.4788 8 8 0.4424 1.1066 3.5191 9 6 2.3793 0.3153 4.6108 10 6 1.3730 -0.1272 5.6750 11 6 1.4806 0.5152 7.0594 12 6 1.9059 -0.9404 6.8563 13 6 3.7985 1.3338 2.3586 14 6 4.1757 0.6586 1.0364 15 6 3.5652 1.4451 -0.1258 16 1 3.9299 2.4720 -0.1006 17 7 3.9524 0.8193 -1.3972 18 6 5.2664 1.3017 -1.8427 19 6 5.6288 0.6397 -3.1471 20 8 4.8675 -0.1560 -3.6554 21 7 6.7993 0.9311 -3.7484 22 6 7.1292 0.3285 -4.9348 23 1 6.4514 -0.3801 -5.3875 24 6 8.3361 0.6285 -5.5545 25 7 8.6526 0.0505 -6.6914 26 14 9.5127 1.8473 -4.7671 27 1 9.2111 3.2153 -5.2598 28 1 9.3532 1.8065 -3.2912 29 1 10.9088 1.4890 -5.1243 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 0.5613 2.0407 1.4527 36 1 1.9214 3.1791 1.2750 37 1 2.9129 -0.5557 4.2303 38 1 3.0910 1.0132 5.0519 39 1 0.3754 -0.3677 5.3076 40 1 2.2680 1.2533 7.2119 41 1 0.5536 0.6976 7.6030 42 1 1.2587 -1.7157 7.2663 43 1 2.9733 -1.1602 6.8754 44 1 4.1464 0.7242 3.1926 45 1 4.2595 2.3202 2.4098 46 1 3.7920 -0.3617 1.0264 47 1 5.2607 0.6408 0.9335 48 1 3.2508 0.9752 -2.1054 49 1 6.0169 1.0585 -1.0906 50 1 5.2287 2.3821 -1.9821 51 1 7.4083 1.5672 -3.3417 52 1 9.4950 0.2602 -7.1242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699597294.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:07 Heat of formation + Delta-G solvation = -71.470497 kcal Electronic energy + Delta-G solvation = -29906.408017 eV Core-core repulsion = 25905.376706 eV Total energy + Delta-G solvation = -4001.031311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.56912 -40.31176 -39.39840 -37.84986 -36.31647 -35.78305 -34.94783 -33.72673 -32.04012 -31.21841 -29.86798 -28.28452 -26.18727 -24.96147 -24.57835 -23.21128 -22.95735 -22.09798 -21.26515 -20.62953 -20.26802 -19.21009 -18.29138 -17.69136 -17.19604 -16.89743 -16.82836 -16.50767 -16.03281 -15.94676 -15.62707 -15.51159 -15.22511 -14.88564 -14.69590 -14.61009 -14.31975 -14.22469 -14.08334 -13.85888 -13.54207 -13.22578 -13.19889 -13.07142 -12.86709 -12.70352 -12.43911 -12.39904 -12.32431 -12.21228 -12.10941 -11.96201 -11.62378 -11.49503 -11.42576 -11.25975 -11.12924 -10.93284 -10.63134 -10.39526 -10.23345 -9.60160 -9.25604 -8.39868 -6.00900 1.31305 1.37099 1.46241 1.68700 1.98752 2.04523 2.24598 2.74500 2.93746 3.16855 3.38475 3.52993 3.72717 3.79845 3.81230 3.96777 4.06891 4.14008 4.18299 4.18835 4.28362 4.37504 4.45736 4.48043 4.55416 4.56907 4.61087 4.65115 4.66255 4.72104 4.76174 4.78651 4.82362 4.86536 4.89734 5.01960 5.06567 5.11876 5.23909 5.28054 5.28817 5.36891 5.47304 5.48598 5.55084 5.62564 5.93662 6.13176 6.41798 6.47157 6.61698 6.90200 7.23859 7.42047 7.99476 8.77840 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019503 B = 0.002172 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.353708 B =12890.832679 C =13647.100984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C -0.096 4.096 4 H 0.082 0.918 5 C 0.118 3.882 6 N -0.606 5.606 7 C 0.512 3.488 8 O -0.584 6.584 9 C -0.103 4.103 10 C -0.159 4.159 11 C -0.180 4.180 12 C -0.169 4.169 13 C 0.108 3.892 14 C -0.125 4.125 15 C 0.095 3.905 16 H 0.064 0.936 17 N -0.679 5.679 18 C 0.064 3.936 19 C 0.448 3.552 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.053 0.947 24 C -0.018 4.018 25 N -0.936 5.936 26 Si 0.967 3.033 27 H -0.258 1.258 28 H -0.228 1.228 29 H -0.277 1.277 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.061 0.939 47 H 0.085 0.915 48 H 0.343 0.657 49 H 0.115 0.885 50 H 0.077 0.923 51 H 0.390 0.610 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 8.150 29.216 31.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.116 4.116 4 H 0.101 0.899 5 C -0.005 4.005 6 N -0.339 5.339 7 C 0.302 3.698 8 O -0.464 6.464 9 C -0.142 4.142 10 C -0.178 4.178 11 C -0.217 4.217 12 C -0.206 4.206 13 C -0.014 4.014 14 C -0.164 4.164 15 C -0.014 4.014 16 H 0.081 0.919 17 N -0.311 5.311 18 C -0.068 4.068 19 C 0.236 3.764 20 O -0.500 6.500 21 N -0.233 5.233 22 C -0.457 4.457 23 H 0.071 0.929 24 C -0.216 4.216 25 N -0.577 5.577 26 Si 0.787 3.213 27 H -0.182 1.182 28 H -0.151 1.151 29 H -0.202 1.202 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.104 0.896 48 H 0.162 0.838 49 H 0.133 0.867 50 H 0.094 0.906 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.635 7.080 29.018 31.093 hybrid contribution 0.272 0.940 -1.064 1.445 sum -8.364 8.020 27.955 30.261 Atomic orbital electron populations 1.21801 0.96231 1.01263 1.01463 1.21364 0.95052 0.96173 1.01575 1.21655 0.94989 0.96995 0.97931 0.89928 1.21614 0.98301 0.96062 0.84512 1.48171 1.08518 1.57839 1.19349 1.21109 0.87371 0.77630 0.83667 1.90657 1.16327 1.59327 1.80132 1.21286 0.98006 1.02041 0.92891 1.21994 1.00005 1.06185 0.89629 1.23115 1.03495 0.96653 0.98423 1.23079 1.02566 0.94273 1.00662 1.21991 0.78151 1.02712 0.98558 1.21973 1.01619 0.99794 0.93002 1.21582 0.93964 0.96609 0.89235 0.91857 1.60121 1.03076 1.62027 1.05920 1.21675 0.94228 0.97696 0.93212 1.21082 0.81935 0.85073 0.88314 1.90553 1.52157 1.39146 1.68127 1.42031 1.18801 1.41258 1.21244 1.18991 1.04404 1.23651 0.98680 0.92897 1.26162 0.99015 1.00175 0.96296 1.69816 1.25000 1.44462 1.18401 0.85340 0.77415 0.78169 0.80420 1.18200 1.15101 1.20212 0.92543 0.93481 0.93030 0.92550 0.92662 0.90152 0.90008 0.86912 0.86347 0.89372 0.87537 0.89281 0.88640 0.87037 0.87206 0.89074 0.92003 0.89636 0.83792 0.86675 0.90569 0.77437 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.68 71.98 0.70 -2.62 16 2 C -0.10 -2.32 4.73 30.60 0.14 -2.18 16 3 C -0.10 -1.75 2.05 -10.72 -0.02 -1.77 16 4 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16 5 C 0.12 1.99 5.70 86.37 0.49 2.48 16 6 N -0.61 -9.23 2.33 -818.91 -1.91 -11.14 16 7 C 0.51 9.61 7.70 87.66 0.67 10.29 16 8 O -0.58 -15.99 14.98 -3.03 -0.05 -16.04 16 9 C -0.10 -1.22 4.33 29.85 0.13 -1.09 16 10 C -0.16 -2.38 5.41 -10.80 -0.06 -2.44 16 11 C -0.18 -2.15 10.18 30.59 0.31 -1.84 16 12 C -0.17 -1.79 10.25 30.59 0.31 -1.48 16 13 C 0.11 1.05 6.34 86.36 0.55 1.59 16 14 C -0.13 -1.86 5.25 30.67 0.16 -1.70 16 15 C 0.10 1.70 2.15 44.94 0.10 1.80 16 16 H 0.06 0.93 7.80 -2.38 -0.02 0.92 16 17 N -0.68 -17.99 5.17 -495.45 -2.56 -20.55 16 18 C 0.06 1.77 5.96 85.56 0.51 2.28 16 19 C 0.45 19.48 7.82 87.66 0.69 20.17 16 20 O -0.62 -33.58 15.78 -3.07 -0.05 -33.63 16 21 N -0.59 -27.08 5.09 -306.98 -1.56 -28.65 16 22 C -0.33 -19.02 10.16 84.04 0.85 -18.16 16 23 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 24 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 25 N -0.94 -56.21 13.96 21.66 0.30 -55.91 16 26 Si 0.97 37.84 27.74 68.60 1.90 39.75 16 27 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 28 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 29 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.05 1.21 6.46 -2.39 -0.02 1.19 16 33 H 0.06 1.52 7.45 -2.39 -0.02 1.51 16 34 H 0.05 1.28 6.13 -2.39 -0.01 1.27 16 35 H 0.08 1.69 5.21 -2.39 -0.01 1.68 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 1.01 7.69 -2.38 -0.02 0.99 16 38 H 0.12 0.80 7.67 -2.39 -0.02 0.78 16 39 H 0.09 1.84 7.30 -2.39 -0.02 1.83 16 40 H 0.11 0.96 8.03 -2.38 -0.02 0.95 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.11 0.58 5.93 -2.39 -0.01 0.57 16 45 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.06 1.18 6.45 -2.39 -0.02 1.17 16 47 H 0.09 1.16 7.42 -2.39 -0.02 1.14 16 48 H 0.34 10.20 7.96 -89.69 -0.71 9.49 16 49 H 0.12 2.59 7.41 -2.39 -0.02 2.57 16 50 H 0.08 1.68 8.05 -2.39 -0.02 1.66 16 51 H 0.39 14.54 5.76 -92.71 -0.53 14.00 16 52 H 0.28 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -80.71 402.51 1.72 -78.99 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: -0.37 Total: 42.37 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.00 Total: 4.80 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -5.73 Total: -116.25 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -0.09 Total: -49.67 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.90 Total: 39.75 kcal Total: -80.71 1.72 -78.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699597294.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.522 kcal (2) G-P(sol) polarization free energy of solvation -80.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds