Wall clock time and date at job start Tue Mar 31 2020 20:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47178 * 2 1 4 4 H 1.09004 * 109.52471 * 54.91822 * 3 2 1 5 5 C 1.53190 * 109.48649 * 294.83169 * 3 2 1 6 6 N 1.46929 * 108.76869 * 185.40024 * 5 3 2 7 7 C 1.34770 * 120.63156 * 233.59791 * 6 5 3 8 8 O 1.21283 * 120.00434 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00046 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.47204 * 179.97438 * 9 7 6 11 11 C 1.52998 * 117.49509 * 243.62131 * 10 9 7 12 12 C 1.52997 * 117.49640 * 174.99811 * 10 9 7 13 13 C 1.46925 * 118.73749 * 53.61227 * 6 5 3 14 14 C 1.53193 * 108.77727 * 306.39982 * 13 6 5 15 15 C 1.53039 * 109.49701 * 174.99949 * 3 2 1 16 16 H 1.09006 * 109.45975 * 61.30963 * 15 3 2 17 17 N 1.46896 * 109.46392 * 301.33684 * 15 3 2 18 18 C 1.46899 * 111.00338 * 154.97025 * 17 15 3 19 19 C 1.50698 * 109.46987 * 179.97438 * 18 17 15 20 20 O 1.21293 * 120.00006 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99773 * 179.72591 * 21 19 18 23 23 H 1.08002 * 119.99671 * 0.27660 * 22 21 19 24 24 C 1.38950 * 120.00030 * 180.27703 * 22 21 19 25 25 N 1.31413 * 119.99930 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47112 * 89.99702 * 26 24 22 28 28 H 1.48498 * 109.47011 * 209.99970 * 26 24 22 29 29 H 1.48494 * 109.47201 * 329.99943 * 26 24 22 30 30 H 1.08996 * 109.46654 * 300.00253 * 1 2 3 31 31 H 1.08999 * 109.46859 * 59.99940 * 1 2 3 32 32 H 1.08994 * 109.46973 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46861 * 239.99976 * 2 1 3 34 34 H 1.08999 * 109.46859 * 120.00060 * 2 1 3 35 35 H 1.09004 * 109.58896 * 65.61780 * 5 3 2 36 36 H 1.09010 * 109.71505 * 305.25794 * 5 3 2 37 37 H 1.09005 * 109.46983 * 299.99510 * 9 7 6 38 38 H 1.09004 * 109.47254 * 59.99332 * 9 7 6 39 39 H 1.08999 * 115.54570 * 29.32788 * 10 9 7 40 40 H 1.08997 * 117.50384 * 359.97438 * 11 10 9 41 41 H 1.09003 * 117.49631 * 145.02282 * 11 10 9 42 42 H 1.09007 * 117.49791 * 214.97938 * 12 10 9 43 43 H 1.08996 * 117.50313 * 359.97438 * 12 10 9 44 44 H 1.08991 * 109.58872 * 186.60748 * 13 6 5 45 45 H 1.09003 * 109.69995 * 66.25025 * 13 6 5 46 46 H 1.09003 * 109.49218 * 294.68190 * 14 13 6 47 47 H 1.08998 * 109.49891 * 174.58642 * 14 13 6 48 48 H 1.00898 * 110.99977 * 278.93267 * 17 15 3 49 49 H 1.09003 * 109.46477 * 60.00383 * 18 17 15 50 50 H 1.08993 * 109.47002 * 300.00709 * 18 17 15 51 51 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 52 52 H 0.96999 * 119.99993 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9828 0.8407 5 6 1.6386 2.1265 -1.3106 6 7 2.2449 3.4642 -1.3508 7 6 1.4854 4.5561 -1.5682 8 8 0.2894 4.4400 -1.7325 9 6 2.1222 5.9214 -1.6071 10 6 1.0472 6.9784 -1.8681 11 6 1.1473 7.7821 -3.1661 12 6 1.4756 8.4466 -1.8275 13 6 3.6950 3.5889 -1.1497 14 6 4.0734 2.8882 0.1589 15 6 3.5653 1.4450 0.1257 16 1 4.0009 0.9262 -0.7282 17 7 3.9553 0.7602 1.3654 18 6 5.3164 0.2175 1.2612 19 6 5.6808 -0.4755 2.5489 20 8 4.8847 -0.5140 3.4632 21 7 6.8908 -1.0535 2.6840 22 6 7.2244 -1.6791 3.8575 23 1 6.5159 -1.7127 4.6719 24 6 8.4741 -2.2699 3.9989 25 7 8.7940 -2.8692 5.1239 26 14 9.6998 -2.2112 2.5905 27 1 10.5376 -0.9914 2.7140 28 1 10.5678 -3.4151 2.6392 29 1 8.9682 -2.1804 1.2986 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5533 2.2156 -1.3588 36 1 1.9948 1.5383 -2.1565 37 1 2.6068 6.1236 -0.6518 38 1 2.8643 5.9536 -2.4049 39 1 0.0498 6.7347 -1.5021 40 1 1.9791 7.5583 -3.8339 41 1 0.2155 8.0674 -3.6545 42 1 0.7598 9.1691 -1.4353 43 1 2.5231 8.6596 -1.6145 44 1 3.9666 4.6429 -1.0917 45 1 4.2228 3.1208 -1.9807 46 1 3.6188 3.4147 0.9981 47 1 5.1575 2.8897 0.2721 48 1 3.8713 1.3758 2.1604 49 1 6.0184 1.0304 1.0753 50 1 5.3610 -0.4963 0.4387 51 1 7.5273 -1.0230 1.9527 52 1 9.6662 -3.2819 5.2225 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699597296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:11 Heat of formation + Delta-G solvation = -52.975634 kcal Electronic energy + Delta-G solvation = -29625.777404 eV Core-core repulsion = 25625.548090 eV Total energy + Delta-G solvation = -4000.229314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.69643 -38.95974 -38.17384 -37.24762 -35.25294 -34.51068 -33.88417 -31.70989 -31.11721 -30.50588 -28.90762 -26.90458 -24.82417 -24.27558 -23.26996 -22.74855 -21.62570 -21.25931 -20.34995 -19.47639 -19.21170 -18.31523 -17.50765 -16.62022 -16.10863 -15.93024 -15.54023 -15.27349 -15.05445 -14.74395 -14.62220 -14.28596 -13.95488 -13.88889 -13.85904 -13.56652 -13.39854 -13.01885 -12.86427 -12.63574 -12.48975 -12.37900 -12.16129 -11.96369 -11.89773 -11.75968 -11.74831 -11.57383 -11.27481 -11.17775 -10.78732 -10.72167 -10.62694 -10.60952 -10.41826 -10.40058 -9.99780 -9.96136 -9.59742 -8.93783 -8.60885 -8.21417 -8.12168 -6.33250 -3.84792 2.37347 2.66806 2.99878 3.03608 3.12591 3.42741 3.71477 4.00577 4.07985 4.11067 4.27921 4.37173 4.53076 4.60728 4.69787 4.72153 4.81168 4.84888 4.95791 5.00961 5.09488 5.15505 5.18370 5.21237 5.25964 5.27663 5.32416 5.38132 5.43812 5.46725 5.52192 5.58913 5.59880 5.73159 5.73298 5.75867 5.86485 5.88094 5.91893 5.93961 5.99375 6.15286 6.25652 6.35268 6.58268 7.08281 7.11391 7.53517 7.56292 7.91900 8.12366 8.57392 8.92871 9.40124 9.80342 10.79870 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016484 B = 0.002201 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.220113 B =12720.567623 C =13780.143986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.085 4.085 4 H 0.074 0.926 5 C 0.114 3.886 6 N -0.613 5.613 7 C 0.518 3.482 8 O -0.540 6.540 9 C -0.110 4.110 10 C -0.141 4.141 11 C -0.179 4.179 12 C -0.180 4.180 13 C 0.111 3.889 14 C -0.169 4.169 15 C 0.092 3.908 16 H 0.078 0.922 17 N -0.659 5.659 18 C 0.048 3.952 19 C 0.449 3.551 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.351 0.649 49 H 0.043 0.957 50 H 0.086 0.914 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.965 18.026 -19.052 28.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.105 4.105 4 H 0.093 0.907 5 C -0.008 4.008 6 N -0.346 5.346 7 C 0.306 3.694 8 O -0.417 6.417 9 C -0.150 4.150 10 C -0.160 4.160 11 C -0.215 4.215 12 C -0.217 4.217 13 C -0.013 4.013 14 C -0.209 4.209 15 C -0.019 4.019 16 H 0.097 0.903 17 N -0.290 5.290 18 C -0.084 4.084 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.171 0.829 49 H 0.061 0.939 50 H 0.105 0.895 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.281 17.201 -18.537 27.690 hybrid contribution 1.945 0.717 -0.939 2.275 sum -9.336 17.918 -19.476 28.062 Atomic orbital electron populations 1.21839 0.96458 1.01424 1.01432 1.21435 0.94831 0.95077 1.03557 1.21476 0.94723 0.97174 0.97130 0.90730 1.21804 1.00118 0.81487 0.97422 1.48168 1.08141 1.07006 1.71327 1.20568 0.86943 0.86064 0.75800 1.90680 1.14971 1.86473 1.49580 1.21261 0.98366 0.91337 1.04022 1.22071 1.00537 0.90989 1.02372 1.23031 1.03241 1.04423 0.90853 1.23004 1.02294 0.95219 1.01231 1.21703 0.80218 1.01586 0.97769 1.22744 1.01965 0.98215 0.98004 1.21619 0.95269 0.91192 0.93787 0.90334 1.60141 1.24075 1.40588 1.04155 1.21735 0.89863 0.98656 0.98182 1.19722 0.83056 0.84446 0.89278 1.90573 1.49599 1.62489 1.41906 1.42214 1.14042 1.51194 1.15593 1.19430 1.01058 1.30615 0.92256 0.86297 1.25048 0.97260 0.96972 0.96942 1.69622 1.22156 1.35815 1.24498 0.86667 0.81899 0.78833 0.81952 1.19695 1.20169 1.19494 0.92845 0.93187 0.92868 0.92577 0.89153 0.88615 0.91590 0.88430 0.88872 0.86388 0.88889 0.88744 0.88630 0.88736 0.89756 0.91055 0.90947 0.90403 0.82870 0.93870 0.89550 0.79739 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.68 37.16 0.36 -1.23 16 2 C -0.11 -1.23 5.31 -26.73 -0.14 -1.37 16 3 C -0.09 -0.88 2.06 -90.50 -0.19 -1.07 16 4 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 5 C 0.11 1.11 5.33 -3.71 -0.02 1.09 16 6 N -0.61 -5.55 2.97 -172.77 -0.51 -6.07 16 7 C 0.52 5.36 7.70 -10.99 -0.08 5.27 16 8 O -0.54 -7.58 14.98 5.56 0.08 -7.50 16 9 C -0.11 -0.79 4.33 -27.88 -0.12 -0.91 16 10 C -0.14 -1.12 5.41 -90.62 -0.49 -1.61 16 11 C -0.18 -1.21 10.18 -26.73 -0.27 -1.48 16 12 C -0.18 -1.12 10.25 -26.73 -0.27 -1.39 16 13 C 0.11 0.75 6.34 -3.71 -0.02 0.72 16 14 C -0.17 -1.40 5.33 -26.61 -0.14 -1.54 16 15 C 0.09 0.94 1.89 -67.67 -0.13 0.82 16 16 H 0.08 0.78 7.80 -51.93 -0.40 0.37 16 17 N -0.66 -9.17 4.96 -107.95 -0.54 -9.71 16 18 C 0.05 0.73 5.97 -4.98 -0.03 0.71 16 19 C 0.45 9.80 7.82 -10.99 -0.09 9.72 16 20 O -0.56 -14.75 15.78 5.55 0.09 -14.66 16 21 N -0.59 -13.69 5.09 -10.96 -0.06 -13.75 16 22 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 23 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 24 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 25 N -0.88 -25.51 13.96 55.50 0.77 -24.73 16 26 Si 0.88 19.01 27.74 -169.99 -4.71 14.29 16 27 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 28 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 29 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.48 6.70 -51.93 -0.35 0.13 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 1.24 7.41 -51.93 -0.38 0.86 16 35 H 0.10 1.08 5.73 -51.93 -0.30 0.78 16 36 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.10 0.57 7.69 -51.93 -0.40 0.17 16 38 H 0.09 0.50 7.68 -51.93 -0.40 0.11 16 39 H 0.12 1.18 7.30 -51.93 -0.38 0.80 16 40 H 0.09 0.55 8.03 -51.93 -0.42 0.13 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.08 0.61 7.42 -51.93 -0.39 0.23 16 48 H 0.35 5.25 8.18 -39.29 -0.32 4.93 16 49 H 0.04 0.56 7.41 -51.93 -0.38 0.17 16 50 H 0.09 1.19 8.05 -51.93 -0.42 0.77 16 51 H 0.37 7.48 5.76 -40.82 -0.24 7.25 16 52 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 407.68 15.07 6.14 6.14 Total: -1.00 -33.43 407.68 -9.48 -42.92 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -8.87 Total: 12.99 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.89 Total: 0.08 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.33 Total: -54.25 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.17 Total: -22.17 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.43 -9.48 -42.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699597296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.060 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds