Wall clock time and date at job start Tue Mar 31 2020 20:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47178 * 2 1 4 4 H 1.09004 * 109.52471 * 54.91822 * 3 2 1 5 5 C 1.53190 * 109.48649 * 294.83169 * 3 2 1 6 6 N 1.46929 * 108.76869 * 185.40024 * 5 3 2 7 7 C 1.34770 * 120.63156 * 233.59791 * 6 5 3 8 8 O 1.21283 * 120.00434 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00046 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.47204 * 179.97438 * 9 7 6 11 11 C 1.52998 * 117.49509 * 243.62131 * 10 9 7 12 12 C 1.52997 * 117.49640 * 174.99811 * 10 9 7 13 13 C 1.46925 * 118.73749 * 53.61227 * 6 5 3 14 14 C 1.53193 * 108.77727 * 306.39982 * 13 6 5 15 15 C 1.53039 * 109.49701 * 174.99949 * 3 2 1 16 16 H 1.09006 * 109.45975 * 61.30963 * 15 3 2 17 17 N 1.46896 * 109.46392 * 301.33684 * 15 3 2 18 18 C 1.46899 * 111.00338 * 154.97025 * 17 15 3 19 19 C 1.50698 * 109.46987 * 179.97438 * 18 17 15 20 20 O 1.21293 * 120.00006 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99773 * 179.72591 * 21 19 18 23 23 H 1.08002 * 119.99671 * 0.27660 * 22 21 19 24 24 C 1.38950 * 120.00030 * 180.27703 * 22 21 19 25 25 N 1.31413 * 119.99930 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47112 * 89.99702 * 26 24 22 28 28 H 1.48498 * 109.47011 * 209.99970 * 26 24 22 29 29 H 1.48494 * 109.47201 * 329.99943 * 26 24 22 30 30 H 1.08996 * 109.46654 * 300.00253 * 1 2 3 31 31 H 1.08999 * 109.46859 * 59.99940 * 1 2 3 32 32 H 1.08994 * 109.46973 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46861 * 239.99976 * 2 1 3 34 34 H 1.08999 * 109.46859 * 120.00060 * 2 1 3 35 35 H 1.09004 * 109.58896 * 65.61780 * 5 3 2 36 36 H 1.09010 * 109.71505 * 305.25794 * 5 3 2 37 37 H 1.09005 * 109.46983 * 299.99510 * 9 7 6 38 38 H 1.09004 * 109.47254 * 59.99332 * 9 7 6 39 39 H 1.08999 * 115.54570 * 29.32788 * 10 9 7 40 40 H 1.08997 * 117.50384 * 359.97438 * 11 10 9 41 41 H 1.09003 * 117.49631 * 145.02282 * 11 10 9 42 42 H 1.09007 * 117.49791 * 214.97938 * 12 10 9 43 43 H 1.08996 * 117.50313 * 359.97438 * 12 10 9 44 44 H 1.08991 * 109.58872 * 186.60748 * 13 6 5 45 45 H 1.09003 * 109.69995 * 66.25025 * 13 6 5 46 46 H 1.09003 * 109.49218 * 294.68190 * 14 13 6 47 47 H 1.08998 * 109.49891 * 174.58642 * 14 13 6 48 48 H 1.00898 * 110.99977 * 278.93267 * 17 15 3 49 49 H 1.09003 * 109.46477 * 60.00383 * 18 17 15 50 50 H 1.08993 * 109.47002 * 300.00709 * 18 17 15 51 51 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 52 52 H 0.96999 * 119.99993 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9828 0.8407 5 6 1.6386 2.1265 -1.3106 6 7 2.2449 3.4642 -1.3508 7 6 1.4854 4.5561 -1.5682 8 8 0.2894 4.4400 -1.7325 9 6 2.1222 5.9214 -1.6071 10 6 1.0472 6.9784 -1.8681 11 6 1.1473 7.7821 -3.1661 12 6 1.4756 8.4466 -1.8275 13 6 3.6950 3.5889 -1.1497 14 6 4.0734 2.8882 0.1589 15 6 3.5653 1.4450 0.1257 16 1 4.0009 0.9262 -0.7282 17 7 3.9553 0.7602 1.3654 18 6 5.3164 0.2175 1.2612 19 6 5.6808 -0.4755 2.5489 20 8 4.8847 -0.5140 3.4632 21 7 6.8908 -1.0535 2.6840 22 6 7.2244 -1.6791 3.8575 23 1 6.5159 -1.7127 4.6719 24 6 8.4741 -2.2699 3.9989 25 7 8.7940 -2.8692 5.1239 26 14 9.6998 -2.2112 2.5905 27 1 10.5376 -0.9914 2.7140 28 1 10.5678 -3.4151 2.6392 29 1 8.9682 -2.1804 1.2986 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5533 2.2156 -1.3588 36 1 1.9948 1.5383 -2.1565 37 1 2.6068 6.1236 -0.6518 38 1 2.8643 5.9536 -2.4049 39 1 0.0498 6.7347 -1.5021 40 1 1.9791 7.5583 -3.8339 41 1 0.2155 8.0674 -3.6545 42 1 0.7598 9.1691 -1.4353 43 1 2.5231 8.6596 -1.6145 44 1 3.9666 4.6429 -1.0917 45 1 4.2228 3.1208 -1.9807 46 1 3.6188 3.4147 0.9981 47 1 5.1575 2.8897 0.2721 48 1 3.8713 1.3758 2.1604 49 1 6.0184 1.0304 1.0753 50 1 5.3610 -0.4963 0.4387 51 1 7.5273 -1.0230 1.9527 52 1 9.6662 -3.2819 5.2225 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699597296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:10 Heat of formation + Delta-G solvation = -76.455620 kcal Electronic energy + Delta-G solvation = -29626.795573 eV Core-core repulsion = 25625.548090 eV Total energy + Delta-G solvation = -4001.247483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.45498 -40.32260 -39.35554 -37.88071 -36.32436 -35.82871 -35.30366 -33.72821 -32.03710 -31.17217 -29.70881 -28.25406 -26.14870 -25.20218 -24.35353 -23.21716 -22.40389 -21.94282 -21.40146 -21.02533 -20.26833 -19.87120 -18.28189 -17.66090 -17.29451 -16.95820 -16.64669 -16.28488 -16.27075 -15.88405 -15.54134 -15.24988 -14.98070 -14.91787 -14.76046 -14.58915 -14.44583 -14.33189 -14.02069 -13.82147 -13.61108 -13.32958 -13.17835 -13.05223 -12.89902 -12.68179 -12.47735 -12.39837 -12.35552 -12.29913 -11.97110 -11.95961 -11.64010 -11.50184 -11.46845 -11.29519 -11.26373 -10.96434 -10.69403 -10.39727 -10.22968 -9.68074 -9.17342 -8.39605 -6.00607 1.31587 1.37275 1.46465 1.63284 1.99221 2.00100 2.24854 2.74768 2.92083 3.17167 3.41520 3.50570 3.66700 3.76084 3.91929 4.00945 4.05274 4.08429 4.16886 4.21510 4.27626 4.36364 4.42635 4.47343 4.51433 4.52173 4.61281 4.62468 4.65823 4.71990 4.75986 4.79086 4.81329 4.84542 5.00872 5.02450 5.04697 5.09971 5.23305 5.27724 5.28298 5.34979 5.44762 5.49979 5.55230 5.66104 5.94154 6.13545 6.40150 6.44176 6.62054 6.90617 7.18653 7.42509 8.00071 8.78157 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016484 B = 0.002201 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.220113 B =12720.567623 C =13780.143986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.077 4.077 4 H 0.052 0.948 5 C 0.119 3.881 6 N -0.611 5.611 7 C 0.510 3.490 8 O -0.588 6.588 9 C -0.101 4.101 10 C -0.162 4.162 11 C -0.180 4.180 12 C -0.168 4.168 13 C 0.110 3.890 14 C -0.164 4.164 15 C 0.095 3.905 16 H 0.096 0.904 17 N -0.678 5.678 18 C 0.065 3.935 19 C 0.448 3.552 20 O -0.616 6.616 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.053 0.947 24 C -0.018 4.018 25 N -0.936 5.936 26 Si 0.967 3.033 27 H -0.256 1.256 28 H -0.278 1.278 29 H -0.229 1.229 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.093 0.907 46 H 0.060 0.940 47 H 0.093 0.907 48 H 0.342 0.658 49 H 0.082 0.918 50 H 0.113 0.887 51 H 0.390 0.610 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.298 19.845 -23.227 31.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.097 4.097 4 H 0.070 0.930 5 C -0.004 4.004 6 N -0.344 5.344 7 C 0.300 3.700 8 O -0.469 6.469 9 C -0.140 4.140 10 C -0.180 4.180 11 C -0.217 4.217 12 C -0.204 4.204 13 C -0.012 4.012 14 C -0.203 4.203 15 C -0.014 4.014 16 H 0.114 0.886 17 N -0.308 5.308 18 C -0.067 4.067 19 C 0.236 3.764 20 O -0.501 6.501 21 N -0.233 5.233 22 C -0.457 4.457 23 H 0.071 0.929 24 C -0.217 4.217 25 N -0.577 5.577 26 Si 0.787 3.213 27 H -0.180 1.180 28 H -0.203 1.203 29 H -0.152 1.152 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.111 0.889 46 H 0.079 0.921 47 H 0.111 0.889 48 H 0.161 0.839 49 H 0.100 0.900 50 H 0.131 0.869 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.607 19.037 -22.740 30.880 hybrid contribution 0.945 0.142 0.482 1.071 sum -7.662 19.179 -22.258 30.364 Atomic orbital electron populations 1.21807 0.96226 1.01571 1.01266 1.21356 0.95082 0.95469 1.02588 1.21356 0.95153 0.96361 0.96803 0.92976 1.21664 0.99177 0.82284 0.97286 1.48273 1.09284 1.06317 1.70482 1.21217 0.86499 0.87406 0.74882 1.90663 1.17161 1.87206 1.51832 1.21287 0.98231 0.88683 1.05842 1.22004 0.99710 0.92522 1.03805 1.23124 1.03609 1.03985 0.90982 1.23084 1.03274 0.93740 1.00344 1.21935 0.78466 1.03365 0.97453 1.22674 1.02624 0.96461 0.98590 1.21667 0.94743 0.92621 0.92407 0.88640 1.60099 1.23659 1.41635 1.05433 1.21648 0.91238 0.99688 0.94144 1.21101 0.81660 0.82711 0.90943 1.90556 1.51044 1.63853 1.44606 1.42032 1.15213 1.51441 1.14651 1.18990 1.00778 1.33003 0.92940 0.92931 1.26165 0.99351 0.95470 1.00682 1.69816 1.23224 1.36964 1.27700 0.85338 0.78201 0.79163 0.78635 1.17997 1.20312 1.15191 0.93986 0.92382 0.92547 0.91312 0.92118 0.90666 0.89969 0.86718 0.86201 0.89461 0.87470 0.89277 0.88613 0.86936 0.87165 0.88895 0.92142 0.88882 0.83932 0.90045 0.86916 0.77423 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.68 71.98 0.70 -2.47 16 2 C -0.11 -2.32 5.31 30.60 0.16 -2.16 16 3 C -0.08 -1.52 2.06 -10.72 -0.02 -1.54 16 4 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 5 C 0.12 2.14 5.33 86.36 0.46 2.60 16 6 N -0.61 -9.60 2.97 -818.90 -2.43 -12.04 16 7 C 0.51 9.85 7.70 87.66 0.67 10.53 16 8 O -0.59 -16.84 14.98 -3.04 -0.05 -16.88 16 9 C -0.10 -1.17 4.33 29.85 0.13 -1.04 16 10 C -0.16 -2.40 5.41 -10.79 -0.06 -2.46 16 11 C -0.18 -2.12 10.18 30.59 0.31 -1.81 16 12 C -0.17 -1.72 10.25 30.59 0.31 -1.41 16 13 C 0.11 0.99 6.34 86.36 0.55 1.54 16 14 C -0.16 -2.10 5.33 30.67 0.16 -1.94 16 15 C 0.10 1.69 1.89 44.94 0.08 1.77 16 16 H 0.10 1.43 7.80 -2.38 -0.02 1.41 16 17 N -0.68 -17.80 4.96 -495.45 -2.46 -20.26 16 18 C 0.06 1.76 5.97 85.56 0.51 2.27 16 19 C 0.45 19.33 7.82 87.66 0.69 20.02 16 20 O -0.62 -33.53 15.78 -3.07 -0.05 -33.58 16 21 N -0.59 -26.92 5.09 -306.98 -1.56 -28.49 16 22 C -0.33 -18.96 10.16 84.04 0.85 -18.10 16 23 H 0.05 3.66 7.39 -2.91 -0.02 3.63 16 24 C -0.02 -1.01 5.50 84.93 0.47 -0.54 16 25 N -0.94 -56.16 13.96 21.66 0.30 -55.85 16 26 Si 0.97 37.71 27.74 68.60 1.90 39.61 16 27 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 28 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 29 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.12 6.70 -2.39 -0.02 1.10 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.06 1.70 7.41 -2.39 -0.02 1.68 16 35 H 0.07 1.70 5.73 -2.39 -0.01 1.69 16 36 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.11 0.94 7.69 -2.38 -0.02 0.92 16 38 H 0.12 0.76 7.68 -2.39 -0.02 0.74 16 39 H 0.09 1.84 7.30 -2.39 -0.02 1.82 16 40 H 0.11 0.94 8.03 -2.39 -0.02 0.92 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.11 0.48 5.93 -2.39 -0.01 0.46 16 45 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.09 0.98 7.42 -2.39 -0.02 0.96 16 48 H 0.34 10.09 8.18 -89.70 -0.73 9.36 16 49 H 0.08 1.66 7.41 -2.39 -0.02 1.64 16 50 H 0.11 2.55 8.05 -2.39 -0.02 2.53 16 51 H 0.39 14.42 5.76 -92.71 -0.53 13.89 16 52 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -81.75 407.68 1.24 -80.51 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: -0.40 Total: 41.71 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 5.98 Total: 5.26 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -6.15 Total: -116.63 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -0.09 Total: -50.46 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 1.90 Total: 39.61 kcal Total: -81.75 1.24 -80.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699597296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.057 kcal (2) G-P(sol) polarization free energy of solvation -81.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds