Wall clock time and date at job start Tue Mar 31 2020 20:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46988 * 2 1 4 4 H 1.09005 * 109.52615 * 55.95836 * 3 2 1 5 5 C 1.53190 * 109.49910 * 295.87358 * 3 2 1 6 6 N 1.46934 * 108.77457 * 185.41317 * 5 3 2 7 7 C 1.34775 * 120.62879 * 233.88409 * 6 5 3 8 8 O 1.21276 * 120.00195 * 355.64665 * 7 6 5 9 9 C 1.50698 * 119.99937 * 175.64756 * 7 6 5 10 10 C 1.53004 * 115.54940 * 63.79969 * 9 7 6 11 11 C 1.53004 * 117.49786 * 278.13832 * 9 7 6 12 12 C 1.52993 * 117.49977 * 209.47595 * 9 7 6 13 13 C 1.46930 * 118.73564 * 53.60743 * 6 5 3 14 14 C 1.53187 * 108.77811 * 306.39350 * 13 6 5 15 15 C 1.53037 * 109.31350 * 54.63456 * 14 13 6 16 16 H 1.08998 * 109.46269 * 58.65714 * 15 14 13 17 17 N 1.46899 * 109.45808 * 178.62960 * 15 14 13 18 18 C 1.46901 * 111.00111 * 272.82222 * 17 15 14 19 19 C 1.50701 * 109.47035 * 179.97438 * 18 17 15 20 20 O 1.21286 * 120.00344 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99598 * 179.97438 * 19 18 17 22 22 C 1.37106 * 119.99908 * 180.02562 * 21 19 18 23 23 H 1.07997 * 119.99469 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99975 * 180.02562 * 22 21 19 25 25 N 1.31404 * 119.99959 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99808 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47338 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47068 * 119.99993 * 26 24 22 29 29 H 1.48499 * 109.47117 * 239.99986 * 26 24 22 30 30 H 1.09002 * 109.46675 * 60.00313 * 1 2 3 31 31 H 1.09000 * 109.46762 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47029 * 299.99813 * 1 2 3 33 33 H 1.08998 * 109.47029 * 240.00187 * 2 1 3 34 34 H 1.08994 * 109.47090 * 120.00158 * 2 1 3 35 35 H 1.08996 * 109.58845 * 65.63110 * 5 3 2 36 36 H 1.08999 * 109.58505 * 305.19781 * 5 3 2 37 37 H 1.08994 * 109.46980 * 51.17610 * 10 9 7 38 38 H 1.08999 * 109.46955 * 171.17278 * 10 9 7 39 39 H 1.09000 * 109.47458 * 291.17405 * 10 9 7 40 40 H 1.08995 * 117.50076 * 359.97438 * 11 9 7 41 41 H 1.09004 * 117.50029 * 145.01833 * 11 9 7 42 42 H 1.09008 * 117.49809 * 214.97639 * 12 9 7 43 43 H 1.08999 * 117.49953 * 359.97438 * 12 9 7 44 44 H 1.09007 * 109.58433 * 66.18189 * 13 6 5 45 45 H 1.09004 * 109.58337 * 186.45998 * 13 6 5 46 46 H 1.08995 * 109.49668 * 174.58998 * 14 13 6 47 47 H 1.09008 * 109.49441 * 294.68348 * 14 13 6 48 48 H 1.00898 * 110.99989 * 148.86981 * 17 15 14 49 49 H 1.08992 * 109.47326 * 300.00203 * 18 17 15 50 50 H 1.08999 * 109.46511 * 60.00110 * 18 17 15 51 51 H 0.97002 * 120.00513 * 0.02562 * 21 19 18 52 52 H 0.97001 * 120.00159 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6192 1.9777 0.8513 5 6 1.6163 2.1346 -1.2993 6 7 2.2222 3.4726 -1.3417 7 6 1.4585 4.5664 -1.5336 8 8 0.2716 4.4466 -1.7519 9 6 2.0796 5.9383 -1.4769 10 6 3.1243 6.2347 -2.5547 11 6 2.2936 6.5603 -0.0955 12 6 1.1932 7.0964 -1.0147 13 6 3.6756 3.5958 -1.1648 14 6 4.0762 2.8872 0.1329 15 6 3.5672 1.4443 0.0997 16 1 3.9881 0.9305 -0.7645 17 7 3.9779 0.7521 1.3286 18 6 5.3162 0.1650 1.1799 19 6 5.7028 -0.5344 2.4576 20 8 4.9384 -0.5433 3.3992 21 7 6.8974 -1.1509 2.5535 22 6 7.2489 -1.7877 3.7157 23 1 6.5683 -1.7955 4.5541 24 6 8.4808 -2.4228 3.8147 25 7 9.3091 -2.4127 2.7947 26 14 8.9594 -3.2909 5.3980 27 1 7.8597 -3.1582 6.3872 28 1 9.2032 -4.7292 5.1197 29 1 10.1953 -2.6762 5.9455 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.5304 2.2243 -1.3283 36 1 1.9599 1.5507 -2.1532 37 1 2.7129 5.9951 -3.5352 38 1 3.3914 7.2910 -2.5211 39 1 4.0129 5.6294 -2.3758 40 1 1.9849 5.9775 0.7722 41 1 3.1785 7.1811 0.0453 42 1 1.3545 8.0698 -1.4782 43 1 0.1607 6.8662 -0.7519 44 1 4.1870 3.1310 -2.0078 45 1 3.9487 4.6495 -1.1076 46 1 5.1620 2.8879 0.2275 47 1 3.6361 3.4088 0.9830 48 1 3.3023 0.0503 1.5913 49 1 5.3089 -0.5532 0.3600 50 1 6.0372 0.9538 0.9654 51 1 7.5086 -1.1442 1.8002 52 1 10.1692 -2.8558 2.8639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699607351.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:38 Heat of formation + Delta-G solvation = -50.562831 kcal Electronic energy + Delta-G solvation = -30196.663080 eV Core-core repulsion = 26196.538393 eV Total energy + Delta-G solvation = -4000.124687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.88679 -39.03154 -38.01109 -36.91116 -35.30096 -34.32877 -33.78369 -31.32060 -30.96402 -29.89951 -28.79499 -27.05572 -25.23525 -24.40058 -23.79495 -22.77961 -22.22870 -21.39115 -20.14265 -19.25996 -18.83876 -17.89719 -17.13014 -16.57655 -16.11432 -15.70284 -15.40184 -15.31058 -14.83252 -14.56460 -14.44160 -14.10595 -13.95738 -13.85546 -13.73059 -13.56913 -13.29942 -13.08347 -12.82319 -12.74883 -12.41473 -12.29136 -12.15218 -11.98600 -11.86244 -11.74405 -11.61220 -11.46195 -11.17979 -11.05298 -10.87776 -10.74173 -10.73104 -10.36205 -10.34633 -10.32483 -10.23258 -9.84426 -9.53439 -8.86255 -8.45243 -8.07846 -7.97249 -6.43346 -3.84027 2.34404 2.68427 3.15116 3.25831 3.33112 3.37979 3.89340 4.04985 4.12163 4.27265 4.32067 4.47825 4.51894 4.57737 4.61052 4.70902 4.92322 4.98860 5.10990 5.13417 5.16795 5.23029 5.26571 5.27706 5.31604 5.35083 5.41374 5.44129 5.45941 5.51362 5.57530 5.60319 5.73378 5.74343 5.77514 5.80139 5.82540 5.89309 5.95225 6.01552 6.08720 6.15313 6.20787 6.30337 6.36529 7.17323 7.23844 7.54038 7.67176 7.95997 8.05321 8.59807 9.16685 9.52967 10.04376 10.74501 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.002316 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.286166 B =12086.847891 C =13001.573798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.103 4.103 4 H 0.084 0.916 5 C 0.118 3.882 6 N -0.604 5.604 7 C 0.553 3.447 8 O -0.542 6.542 9 C -0.164 4.164 10 C -0.117 4.117 11 C -0.157 4.157 12 C -0.145 4.145 13 C 0.100 3.900 14 C -0.123 4.123 15 C 0.092 3.908 16 H 0.045 0.955 17 N -0.665 5.665 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.351 0.649 49 H 0.042 0.958 50 H 0.085 0.915 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 14.959 -13.412 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.122 4.122 4 H 0.103 0.897 5 C -0.004 4.004 6 N -0.336 5.336 7 C 0.341 3.659 8 O -0.419 6.419 9 C -0.167 4.167 10 C -0.174 4.174 11 C -0.194 4.194 12 C -0.182 4.182 13 C -0.023 4.023 14 C -0.162 4.162 15 C -0.018 4.018 16 H 0.062 0.938 17 N -0.300 5.300 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.115 0.885 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.174 0.826 49 H 0.060 0.940 50 H 0.103 0.897 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.007 15.339 -12.595 23.197 hybrid contribution 0.784 -1.318 -0.288 1.561 sum -11.223 14.021 -12.883 22.103 Atomic orbital electron populations 1.21794 0.95361 1.01787 1.02007 1.21607 0.96461 0.95543 1.02628 1.21716 0.95402 0.96628 0.98479 0.89741 1.21719 0.99935 0.81756 0.97012 1.48035 1.08094 1.06301 1.71160 1.19558 0.85945 0.84795 0.75591 1.90676 1.15681 1.86612 1.48961 1.21391 1.03492 0.92526 0.99266 1.21502 0.96739 1.02358 0.96786 1.23127 1.01345 1.02758 0.92182 1.23042 0.96986 0.96272 1.01917 1.22082 0.79598 1.02441 0.98178 1.21946 1.01813 0.95405 0.97064 1.21502 0.93608 0.94910 0.91769 0.93751 1.60151 1.03483 1.34806 1.31588 1.21720 0.92075 0.97879 0.96511 1.19822 0.83785 0.84292 0.89474 1.90524 1.52031 1.64193 1.39942 1.41879 1.15144 1.47454 1.15638 1.19750 1.01263 1.28866 0.92882 0.87893 1.25258 0.95799 0.98061 0.98862 1.69615 1.09668 1.44461 1.30609 0.85808 0.78582 0.78671 0.81337 1.19216 1.20777 1.20730 0.92625 0.92580 0.92479 0.91809 0.90830 0.88657 0.91514 0.91749 0.91334 0.90968 0.88237 0.87639 0.87942 0.87912 0.91352 0.88519 0.90339 0.90579 0.82581 0.93969 0.89716 0.77493 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.66 37.16 0.36 -1.09 16 2 C -0.12 -1.28 5.25 -26.73 -0.14 -1.42 16 3 C -0.10 -1.11 2.02 -90.50 -0.18 -1.29 16 4 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 1.22 5.29 -3.71 -0.02 1.20 16 6 N -0.60 -6.17 2.97 -172.76 -0.51 -6.68 16 7 C 0.55 6.43 7.00 -10.99 -0.08 6.36 16 8 O -0.54 -8.21 16.08 5.56 0.09 -8.12 16 9 C -0.16 -1.41 1.41 -155.66 -0.22 -1.63 16 10 C -0.12 -0.75 9.25 37.16 0.34 -0.41 16 11 C -0.16 -1.18 9.72 -26.69 -0.26 -1.44 16 12 C -0.14 -1.16 9.72 -26.69 -0.26 -1.42 16 13 C 0.10 0.84 5.62 -3.71 -0.02 0.82 16 14 C -0.12 -1.28 5.61 -26.62 -0.15 -1.43 16 15 C 0.09 1.08 1.95 -67.67 -0.13 0.95 16 16 H 0.04 0.50 7.76 -51.93 -0.40 0.10 16 17 N -0.67 -10.30 5.94 -107.95 -0.64 -10.94 16 18 C 0.05 0.87 5.96 -4.97 -0.03 0.84 16 19 C 0.44 10.24 7.82 -10.98 -0.09 10.16 16 20 O -0.58 -15.69 15.78 5.55 0.09 -15.60 16 21 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 22 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 26 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 H 0.05 0.50 6.67 -51.93 -0.35 0.16 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.87 6.02 -51.93 -0.31 0.56 16 35 H 0.10 1.10 5.72 -51.93 -0.30 0.80 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 39 H 0.07 0.40 5.59 -51.93 -0.29 0.11 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.10 0.97 7.96 -51.93 -0.41 0.55 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.68 4.19 -51.93 -0.22 0.46 16 46 H 0.08 0.81 7.58 -51.93 -0.39 0.42 16 47 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 48 H 0.35 5.72 5.72 -39.29 -0.22 5.50 16 49 H 0.04 0.65 8.05 -51.93 -0.42 0.24 16 50 H 0.08 1.32 7.57 -51.93 -0.39 0.93 16 51 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 52 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 405.30 15.07 6.11 6.11 Total: -1.00 -32.65 405.30 -8.95 -41.60 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -8.61 Total: 13.26 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.11 Total: 2.27 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.49 Total: -55.42 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.18 Total: -23.72 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.65 -8.95 -41.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699607351.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.963 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds