Wall clock time and date at job start Tue Mar 31 2020 20:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46988 * 2 1 4 4 H 1.09005 * 109.52615 * 55.95836 * 3 2 1 5 5 C 1.53190 * 109.49910 * 295.87358 * 3 2 1 6 6 N 1.46934 * 108.77457 * 185.41317 * 5 3 2 7 7 C 1.34775 * 120.62879 * 233.88409 * 6 5 3 8 8 O 1.21276 * 120.00195 * 355.64665 * 7 6 5 9 9 C 1.50698 * 119.99937 * 175.64756 * 7 6 5 10 10 C 1.53004 * 115.54940 * 63.79969 * 9 7 6 11 11 C 1.53004 * 117.49786 * 278.13832 * 9 7 6 12 12 C 1.52993 * 117.49977 * 209.47595 * 9 7 6 13 13 C 1.46930 * 118.73564 * 53.60743 * 6 5 3 14 14 C 1.53187 * 108.77811 * 306.39350 * 13 6 5 15 15 C 1.53037 * 109.31350 * 54.63456 * 14 13 6 16 16 H 1.08998 * 109.46269 * 58.65714 * 15 14 13 17 17 N 1.46899 * 109.45808 * 178.62960 * 15 14 13 18 18 C 1.46901 * 111.00111 * 272.82222 * 17 15 14 19 19 C 1.50701 * 109.47035 * 179.97438 * 18 17 15 20 20 O 1.21286 * 120.00344 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99598 * 179.97438 * 19 18 17 22 22 C 1.37106 * 119.99908 * 180.02562 * 21 19 18 23 23 H 1.07997 * 119.99469 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99975 * 180.02562 * 22 21 19 25 25 N 1.31404 * 119.99959 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99808 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47338 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47068 * 119.99993 * 26 24 22 29 29 H 1.48499 * 109.47117 * 239.99986 * 26 24 22 30 30 H 1.09002 * 109.46675 * 60.00313 * 1 2 3 31 31 H 1.09000 * 109.46762 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47029 * 299.99813 * 1 2 3 33 33 H 1.08998 * 109.47029 * 240.00187 * 2 1 3 34 34 H 1.08994 * 109.47090 * 120.00158 * 2 1 3 35 35 H 1.08996 * 109.58845 * 65.63110 * 5 3 2 36 36 H 1.08999 * 109.58505 * 305.19781 * 5 3 2 37 37 H 1.08994 * 109.46980 * 51.17610 * 10 9 7 38 38 H 1.08999 * 109.46955 * 171.17278 * 10 9 7 39 39 H 1.09000 * 109.47458 * 291.17405 * 10 9 7 40 40 H 1.08995 * 117.50076 * 359.97438 * 11 9 7 41 41 H 1.09004 * 117.50029 * 145.01833 * 11 9 7 42 42 H 1.09008 * 117.49809 * 214.97639 * 12 9 7 43 43 H 1.08999 * 117.49953 * 359.97438 * 12 9 7 44 44 H 1.09007 * 109.58433 * 66.18189 * 13 6 5 45 45 H 1.09004 * 109.58337 * 186.45998 * 13 6 5 46 46 H 1.08995 * 109.49668 * 174.58998 * 14 13 6 47 47 H 1.09008 * 109.49441 * 294.68348 * 14 13 6 48 48 H 1.00898 * 110.99989 * 148.86981 * 17 15 14 49 49 H 1.08992 * 109.47326 * 300.00203 * 18 17 15 50 50 H 1.08999 * 109.46511 * 60.00110 * 18 17 15 51 51 H 0.97002 * 120.00513 * 0.02562 * 21 19 18 52 52 H 0.97001 * 120.00159 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6192 1.9777 0.8513 5 6 1.6163 2.1346 -1.2993 6 7 2.2222 3.4726 -1.3417 7 6 1.4585 4.5664 -1.5336 8 8 0.2716 4.4466 -1.7519 9 6 2.0796 5.9383 -1.4769 10 6 3.1243 6.2347 -2.5547 11 6 2.2936 6.5603 -0.0955 12 6 1.1932 7.0964 -1.0147 13 6 3.6756 3.5958 -1.1648 14 6 4.0762 2.8872 0.1329 15 6 3.5672 1.4443 0.0997 16 1 3.9881 0.9305 -0.7645 17 7 3.9779 0.7521 1.3286 18 6 5.3162 0.1650 1.1799 19 6 5.7028 -0.5344 2.4576 20 8 4.9384 -0.5433 3.3992 21 7 6.8974 -1.1509 2.5535 22 6 7.2489 -1.7877 3.7157 23 1 6.5683 -1.7955 4.5541 24 6 8.4808 -2.4228 3.8147 25 7 9.3091 -2.4127 2.7947 26 14 8.9594 -3.2909 5.3980 27 1 7.8597 -3.1582 6.3872 28 1 9.2032 -4.7292 5.1197 29 1 10.1953 -2.6762 5.9455 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.5304 2.2243 -1.3283 36 1 1.9599 1.5507 -2.1532 37 1 2.7129 5.9951 -3.5352 38 1 3.3914 7.2910 -2.5211 39 1 4.0129 5.6294 -2.3758 40 1 1.9849 5.9775 0.7722 41 1 3.1785 7.1811 0.0453 42 1 1.3545 8.0698 -1.4782 43 1 0.1607 6.8662 -0.7519 44 1 4.1870 3.1310 -2.0078 45 1 3.9487 4.6495 -1.1076 46 1 5.1620 2.8879 0.2275 47 1 3.6361 3.4088 0.9830 48 1 3.3023 0.0503 1.5913 49 1 5.3089 -0.5532 0.3600 50 1 6.0372 0.9538 0.9654 51 1 7.5086 -1.1442 1.8002 52 1 10.1692 -2.8558 2.8639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699607351.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:37 Heat of formation + Delta-G solvation = -72.483892 kcal Electronic energy + Delta-G solvation = -30197.613648 eV Core-core repulsion = 26196.538393 eV Total energy + Delta-G solvation = -4001.075255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.72609 -40.30368 -39.48007 -37.70043 -36.40272 -35.86566 -35.15144 -33.26575 -32.07415 -30.64781 -29.44462 -28.42049 -26.64115 -25.36579 -25.05717 -23.38192 -23.07388 -22.27296 -21.22836 -20.83513 -19.90877 -19.64249 -18.10845 -17.65244 -17.33498 -16.84250 -16.55121 -16.33091 -16.29579 -15.87006 -15.50092 -15.45674 -15.16183 -14.82317 -14.69470 -14.52107 -14.29615 -14.05207 -13.83014 -13.63399 -13.49291 -13.27830 -13.25057 -13.24678 -13.05280 -12.89634 -12.60131 -12.51203 -12.42898 -12.39618 -12.11844 -11.99236 -11.64678 -11.63053 -11.50923 -11.50288 -11.24608 -10.93964 -10.68807 -10.32406 -10.00728 -9.71529 -9.30007 -8.46532 -5.94811 1.36546 1.42137 1.48716 1.55930 1.90549 2.06254 2.29297 2.74241 2.90796 3.21053 3.38665 3.48475 3.63504 3.73588 3.75780 3.81654 3.90176 4.02825 4.17082 4.19944 4.29715 4.30474 4.34431 4.46399 4.50687 4.56306 4.62000 4.66082 4.69363 4.72362 4.74523 4.76995 4.85673 4.88159 4.94317 4.97473 4.98063 5.04882 5.15910 5.19706 5.22320 5.28195 5.32580 5.38916 5.42033 5.53378 5.92719 6.15042 6.35407 6.42132 6.61077 7.09690 7.13628 7.57377 8.12981 8.71055 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.002316 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.286166 B =12086.847891 C =13001.573798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.092 4.092 4 H 0.062 0.938 5 C 0.121 3.879 6 N -0.602 5.602 7 C 0.545 3.455 8 O -0.587 6.587 9 C -0.171 4.171 10 C -0.113 4.113 11 C -0.146 4.146 12 C -0.150 4.150 13 C 0.103 3.897 14 C -0.120 4.120 15 C 0.094 3.906 16 H 0.060 0.940 17 N -0.680 5.680 18 C 0.066 3.934 19 C 0.438 3.562 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.332 4.332 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.115 0.885 46 H 0.085 0.915 47 H 0.058 0.942 48 H 0.344 0.656 49 H 0.066 0.934 50 H 0.107 0.893 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.678 15.764 -14.869 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.111 4.111 4 H 0.080 0.920 5 C -0.002 4.002 6 N -0.333 5.333 7 C 0.334 3.666 8 O -0.468 6.468 9 C -0.174 4.174 10 C -0.170 4.170 11 C -0.183 4.183 12 C -0.187 4.187 13 C -0.019 4.019 14 C -0.159 4.159 15 C -0.016 4.016 16 H 0.078 0.922 17 N -0.315 5.315 18 C -0.066 4.066 19 C 0.225 3.775 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.461 4.461 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.200 1.200 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.133 0.867 46 H 0.103 0.897 47 H 0.077 0.923 48 H 0.166 0.834 49 H 0.084 0.916 50 H 0.125 0.875 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.371 16.152 -14.082 23.806 hybrid contribution 0.221 -1.564 0.177 1.589 sum -10.150 14.588 -13.904 22.565 Atomic orbital electron populations 1.21765 0.94889 1.02195 1.01816 1.21572 0.96881 0.95131 1.02358 1.21576 0.94905 0.96699 0.97967 0.91951 1.21664 0.99260 0.82166 0.97100 1.48143 1.08923 1.05958 1.70263 1.20164 0.85537 0.86157 0.74723 1.90650 1.17650 1.87363 1.51134 1.21469 1.04302 0.90832 1.00770 1.21531 0.96152 1.03884 0.95398 1.23173 1.01914 1.02262 0.90982 1.23102 0.96014 0.97176 1.02435 1.22225 0.78322 1.03603 0.97718 1.21916 1.01996 0.94379 0.97592 1.21607 0.93972 0.95373 0.90611 0.92162 1.60181 1.02695 1.34621 1.33979 1.21585 0.93306 0.98441 0.93251 1.20926 0.82493 0.83039 0.91014 1.90495 1.53037 1.65399 1.42206 1.41935 1.16019 1.47936 1.15152 1.19669 1.01842 1.31101 0.93534 0.90528 1.26000 0.95215 0.98087 1.01893 1.69665 1.09964 1.44560 1.31848 0.84903 0.78116 0.78020 0.77497 1.19958 1.19605 1.19560 0.92086 0.91850 0.93424 0.90523 0.92481 0.90130 0.89846 0.92380 0.89387 0.89741 0.89818 0.85103 0.85654 0.90151 0.89241 0.86728 0.89667 0.92309 0.83394 0.91626 0.87541 0.76914 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.66 71.98 0.70 -2.15 16 2 C -0.12 -2.46 5.25 30.60 0.16 -2.29 16 3 C -0.09 -1.94 2.02 -10.72 -0.02 -1.96 16 4 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 5 C 0.12 2.39 5.29 86.36 0.46 2.85 16 6 N -0.60 -11.54 2.97 -818.89 -2.43 -13.97 16 7 C 0.54 12.42 7.00 87.66 0.61 13.04 16 8 O -0.59 -18.28 16.08 -3.02 -0.05 -18.33 16 9 C -0.17 -2.69 1.41 -52.93 -0.07 -2.76 16 10 C -0.11 -1.11 9.25 71.98 0.67 -0.45 16 11 C -0.15 -1.95 9.72 30.62 0.30 -1.66 16 12 C -0.15 -2.26 9.72 30.62 0.30 -1.96 16 13 C 0.10 1.45 5.62 86.36 0.49 1.94 16 14 C -0.12 -2.25 5.61 30.67 0.17 -2.08 16 15 C 0.09 2.03 1.95 44.94 0.09 2.12 16 16 H 0.06 1.16 7.76 -2.39 -0.02 1.15 16 17 N -0.68 -20.53 5.94 -495.45 -2.94 -23.47 16 18 C 0.07 2.16 5.96 85.56 0.51 2.67 16 19 C 0.44 20.43 7.82 87.66 0.69 21.12 16 20 O -0.62 -34.50 15.78 -3.05 -0.05 -34.55 16 21 N -0.57 -28.90 5.29 -306.98 -1.62 -30.53 16 22 C -0.33 -18.71 9.68 84.04 0.81 -17.89 16 23 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 24 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 25 N -0.92 -48.90 13.05 21.66 0.28 -48.61 16 26 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 29 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 30 H 0.06 1.09 6.67 -2.39 -0.02 1.08 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.37 6.02 -2.39 -0.01 1.35 16 35 H 0.08 1.88 5.72 -2.39 -0.01 1.86 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.09 0.55 8.07 -2.39 -0.02 0.53 16 39 H 0.08 0.61 5.59 -2.39 -0.01 0.60 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.08 1.57 7.96 -2.39 -0.02 1.55 16 44 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.11 1.23 4.19 -2.39 -0.01 1.22 16 46 H 0.08 1.52 7.58 -2.39 -0.02 1.50 16 47 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 48 H 0.34 11.28 5.72 -89.70 -0.51 10.77 16 49 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 50 H 0.11 3.03 7.57 -2.39 -0.02 3.01 16 51 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 52 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -72.69 405.30 1.22 -71.47 By element: Atomic # 1 Polarization: 43.27 SS G_CDS: -0.31 Total: 42.96 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 6.31 Total: 10.36 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -6.72 Total: -116.58 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -0.10 Total: -52.87 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -72.69 1.22 -71.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699607351.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.015 kcal (2) G-P(sol) polarization free energy of solvation -72.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds