Wall clock time and date at job start Tue Mar 31 2020 19:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50698 * 120.00191 * 2 1 4 4 C 1.32994 * 119.99876 * 180.02562 * 2 1 3 5 5 C 1.47102 * 119.99823 * 352.48688 * 4 2 1 6 6 O 1.21614 * 120.00560 * 353.64994 * 5 4 2 7 7 N 1.34784 * 119.99926 * 173.65350 * 5 4 2 8 8 C 1.46498 * 119.99866 * 180.27431 * 7 5 4 9 9 C 1.53000 * 109.46827 * 179.72159 * 8 7 5 10 10 C 1.53001 * 109.52130 * 60.00477 * 9 8 7 11 11 C 1.53118 * 109.52656 * 299.87313 * 9 8 7 12 12 C 1.53042 * 109.27670 * 182.50023 * 11 9 8 13 13 N 1.46856 * 109.57243 * 59.08740 * 12 11 9 14 14 C 1.46902 * 110.99835 * 174.19028 * 13 12 11 15 15 C 1.50701 * 109.46571 * 191.06256 * 14 13 12 16 16 O 1.21289 * 120.00692 * 6.49209 * 15 14 13 17 17 N 1.34783 * 119.99434 * 186.49626 * 15 14 13 18 18 C 1.37097 * 119.99856 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99715 * 359.97438 * 18 17 15 20 20 C 1.38943 * 120.00143 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99803 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00211 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46705 * 90.00020 * 22 20 18 24 24 H 1.48492 * 109.47108 * 210.00118 * 22 20 18 25 25 H 1.48493 * 109.46869 * 330.00425 * 22 20 18 26 26 C 1.46849 * 111.19778 * 298.28978 * 13 12 11 27 27 C 1.53034 * 109.52426 * 61.73866 * 26 13 12 28 28 H 1.09001 * 109.47170 * 264.22915 * 1 2 3 29 29 H 1.09001 * 109.47509 * 24.22386 * 1 2 3 30 30 H 1.09002 * 109.47609 * 144.22903 * 1 2 3 31 31 H 1.09002 * 109.47225 * 270.00398 * 3 2 1 32 32 H 1.08998 * 109.46940 * 29.99812 * 3 2 1 33 33 H 1.09002 * 109.47295 * 149.99907 * 3 2 1 34 34 H 1.07998 * 120.00286 * 172.48956 * 4 2 1 35 35 H 0.96998 * 119.99569 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.47155 * 299.72097 * 8 7 5 37 37 H 1.09002 * 109.47436 * 59.72605 * 8 7 5 38 38 H 1.08994 * 109.47224 * 59.99755 * 10 9 8 39 39 H 1.08999 * 109.47321 * 179.97438 * 10 9 8 40 40 H 1.09005 * 109.47134 * 299.99590 * 10 9 8 41 41 H 1.08997 * 109.50578 * 302.38593 * 11 9 8 42 42 H 1.09002 * 109.50065 * 62.49923 * 11 9 8 43 43 H 1.08997 * 109.41388 * 299.07113 * 12 11 9 44 44 H 1.08998 * 109.46604 * 179.12939 * 12 11 9 45 45 H 1.08996 * 109.46938 * 311.06129 * 14 13 12 46 46 H 1.09002 * 109.47043 * 71.06471 * 14 13 12 47 47 H 0.97001 * 120.00061 * 359.97438 * 17 15 14 48 48 H 0.97002 * 119.99839 * 179.97438 * 21 20 18 49 49 H 1.09005 * 109.45950 * 301.72552 * 26 13 12 50 50 H 1.08997 * 109.46068 * 181.76023 * 26 13 12 51 51 H 1.09001 * 109.50211 * 180.88055 * 27 26 13 52 52 H 1.09001 * 109.53552 * 60.78021 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4458 -2.4203 0.1655 6 8 0.2563 -2.4116 0.4183 7 7 2.0989 -3.5924 0.0375 8 6 1.3745 -4.8557 0.1969 9 6 2.3398 -6.0258 -0.0032 10 6 3.4609 -5.9470 1.0350 11 6 2.9399 -5.9593 -1.4104 12 6 3.8560 -7.1660 -1.6265 13 7 3.0853 -8.4049 -1.4603 14 6 3.8998 -9.5806 -1.7955 15 6 3.0148 -10.7976 -1.8782 16 8 1.8107 -10.6788 -1.7947 17 7 3.5616 -12.0182 -2.0448 18 6 2.7566 -13.1255 -2.1195 19 1 1.6845 -13.0197 -2.0444 20 6 3.3202 -14.3837 -2.2918 21 7 4.6248 -14.5125 -2.3827 22 14 2.2235 -15.8926 -2.3929 23 1 1.8502 -16.1391 -3.8089 24 1 2.9531 -17.0714 -1.8608 25 1 0.9953 -15.6664 -1.5894 26 6 2.5398 -8.5126 -0.1011 27 6 1.5833 -7.3470 0.1600 28 1 -0.3633 -0.1033 1.0225 29 1 -0.3634 0.9372 -0.4216 30 1 -0.3634 -0.8338 -0.6007 31 1 2.4422 1.6198 -1.0277 32 1 1.6714 2.0647 0.5138 33 1 3.2130 1.1747 0.5138 34 1 3.2450 -1.1558 -0.1228 35 1 3.0478 -3.5993 -0.1637 36 1 0.9463 -4.9052 1.1980 37 1 0.5762 -4.9127 -0.5431 38 1 3.0331 -5.9967 2.0362 39 1 4.1479 -6.7811 0.8920 40 1 4.0004 -5.0072 0.9166 41 1 2.1384 -5.9750 -2.1489 42 1 3.5159 -5.0401 -1.5173 43 1 4.6657 -7.1414 -0.8972 44 1 4.2728 -7.1299 -2.6330 45 1 4.3894 -9.4214 -2.7562 46 1 4.6544 -9.7318 -1.0236 47 1 4.5246 -12.1132 -2.1119 48 1 5.0183 -15.3910 -2.5026 49 1 3.3557 -8.4817 0.6211 50 1 2.0008 -9.4546 0.0003 51 1 1.1907 -7.4186 1.1744 52 1 0.7594 -7.3849 -0.5526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699859824.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:10 Heat of formation + Delta-G solvation = -86.918769 kcal Electronic energy + Delta-G solvation = -29351.786860 eV Core-core repulsion = 25350.085662 eV Total energy + Delta-G solvation = -4001.701199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.36982 -40.56361 -39.65226 -37.07440 -36.16523 -35.80195 -34.29253 -33.23669 -31.80400 -30.27805 -29.11606 -28.60783 -27.92227 -27.09602 -25.62532 -24.25338 -22.83330 -21.90593 -20.97959 -19.91554 -19.86241 -19.16727 -17.97144 -17.71023 -16.92989 -16.63588 -16.50373 -16.32984 -16.21954 -15.73070 -15.56665 -15.30451 -15.27498 -15.06451 -14.88310 -14.51555 -14.33843 -14.18783 -13.86291 -13.47941 -13.37503 -13.33155 -13.15951 -13.06893 -12.92944 -12.84125 -12.63742 -12.52470 -12.47245 -12.40538 -12.37398 -12.12775 -12.04844 -11.58593 -11.52770 -11.30462 -11.16438 -10.61387 -10.24568 -10.22178 -9.98246 -9.76447 -9.07469 -8.45634 -5.93956 0.45000 1.37792 1.41254 1.53788 2.08210 2.28983 2.32399 2.35993 2.80881 3.21424 3.40611 3.62728 3.72279 3.80874 3.87319 3.96837 4.21770 4.26215 4.32190 4.33308 4.35517 4.44484 4.50790 4.57037 4.60489 4.65375 4.69529 4.70760 4.77281 4.78932 4.79996 4.85067 4.93360 4.98591 5.04326 5.08255 5.12233 5.15645 5.20554 5.28905 5.32203 5.41713 5.50071 5.51548 5.59440 5.67780 5.93649 6.14393 6.32837 6.62955 6.66589 7.14912 7.34564 7.58973 8.15596 8.71777 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036188 B = 0.001762 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.558339 B =15890.988985 C =16207.034574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.031 4.031 3 C -0.124 4.124 4 C -0.247 4.247 5 C 0.533 3.467 6 O -0.585 6.585 7 N -0.711 5.711 8 C 0.141 3.859 9 C -0.061 4.061 10 C -0.141 4.141 11 C -0.098 4.098 12 C 0.054 3.946 13 N -0.536 5.536 14 C 0.059 3.941 15 C 0.440 3.560 16 O -0.615 6.615 17 N -0.576 5.576 18 C -0.332 4.332 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.275 1.275 26 C 0.062 3.938 27 C -0.095 4.095 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.413 0.587 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.041 0.959 50 H 0.049 0.951 51 H 0.073 0.927 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.581 29.516 5.556 30.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.033 4.033 3 C -0.181 4.181 4 C -0.267 4.267 5 C 0.325 3.675 6 O -0.468 6.468 7 N -0.363 5.363 8 C 0.017 3.983 9 C -0.061 4.061 10 C -0.198 4.198 11 C -0.136 4.136 12 C -0.073 4.073 13 N -0.261 5.261 14 C -0.072 4.072 15 C 0.228 3.772 16 O -0.500 6.500 17 N -0.214 5.214 18 C -0.462 4.462 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.200 1.200 26 C -0.066 4.066 27 C -0.134 4.134 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.173 0.827 35 H 0.251 0.749 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.128 0.872 46 H 0.083 0.917 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.092 0.908 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.696 29.425 5.444 30.046 hybrid contribution 0.729 -1.601 0.252 1.778 sum 3.425 27.824 5.696 28.607 Atomic orbital electron populations 1.21083 0.92286 1.02266 1.02496 1.22856 0.96291 0.95925 0.88194 1.21061 1.00304 0.92688 1.03998 1.22490 1.01510 0.90641 1.12096 1.19138 0.86592 0.85450 0.76349 1.90760 1.17218 1.88304 1.50555 1.45829 1.13651 1.04804 1.72044 1.21169 0.94104 0.82260 1.00794 1.20720 0.95643 0.92981 0.96771 1.21948 0.97438 1.02668 0.97771 1.21612 0.99188 0.97547 0.95226 1.22247 0.94830 0.88208 1.02026 1.61436 1.36549 1.01309 1.26826 1.21710 0.93580 0.88790 1.03124 1.20862 0.89296 0.84983 0.82072 1.90484 1.17035 1.86455 1.56071 1.41947 1.09561 1.05283 1.64584 1.19638 0.91891 0.85745 1.48915 0.90518 1.25992 0.97540 1.01257 0.96391 1.69669 1.10615 1.26007 1.49861 0.84953 0.77785 0.77081 0.78665 1.19704 1.19481 1.19958 1.22014 0.97508 0.98973 0.88057 1.21467 0.97605 0.92852 1.01458 0.91569 0.90768 0.91971 0.89088 0.90125 0.89756 0.82684 0.74916 0.92381 0.93222 0.92490 0.92267 0.90560 0.92552 0.88703 0.93047 0.89878 0.87215 0.91695 0.77072 0.91360 0.94078 0.93294 0.90822 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.45 71.24 0.60 -1.49 16 2 C -0.03 -0.40 6.11 -17.62 -0.11 -0.51 16 3 C -0.12 -0.74 10.01 71.24 0.71 -0.02 16 4 C -0.25 -3.37 9.62 23.43 0.23 -3.15 16 5 C 0.53 10.90 7.61 86.57 0.66 11.56 16 6 O -0.59 -16.77 13.30 -4.07 -0.05 -16.82 16 7 N -0.71 -11.50 4.98 -466.71 -2.32 -13.82 16 8 C 0.14 2.84 4.57 86.38 0.39 3.24 16 9 C -0.06 -1.15 0.53 -52.10 -0.03 -1.18 16 10 C -0.14 -2.13 7.73 71.98 0.56 -1.58 16 11 C -0.10 -1.80 4.68 30.65 0.14 -1.66 16 12 C 0.05 1.16 5.21 86.33 0.45 1.61 16 13 N -0.54 -16.95 4.34 -900.89 -3.91 -20.85 16 14 C 0.06 2.04 5.45 85.56 0.47 2.50 16 15 C 0.44 21.19 7.31 87.66 0.64 21.84 16 16 O -0.61 -34.55 14.34 -3.06 -0.04 -34.59 16 17 N -0.58 -29.83 5.29 -306.98 -1.62 -31.45 16 18 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 19 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 21 N -0.92 -49.88 13.05 21.66 0.28 -49.59 16 22 Si 0.99 43.46 29.55 68.60 2.03 45.48 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 C 0.06 1.97 4.87 86.32 0.42 2.39 16 27 C -0.10 -2.50 4.88 30.65 0.15 -2.35 16 28 H 0.07 1.26 8.02 -2.39 -0.02 1.24 16 29 H 0.07 0.89 8.09 -2.39 -0.02 0.88 16 30 H 0.06 1.40 6.19 -2.39 -0.01 1.38 16 31 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.08 0.39 8.12 -2.39 -0.02 0.37 16 33 H 0.08 0.32 8.07 -2.39 -0.02 0.30 16 34 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 35 H 0.41 4.17 6.18 -92.71 -0.57 3.60 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 0.98 4.93 -2.39 -0.01 0.97 16 40 H 0.08 0.79 6.87 -2.38 -0.02 0.77 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.09 1.14 6.95 -2.39 -0.02 1.12 16 43 H 0.05 0.94 6.52 -2.39 -0.02 0.93 16 44 H 0.08 1.65 8.00 -2.39 -0.02 1.63 16 45 H 0.11 3.31 7.97 -2.39 -0.02 3.30 16 46 H 0.07 1.99 8.11 -2.39 -0.02 1.97 16 47 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 48 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 49 H 0.04 1.15 6.51 -2.38 -0.02 1.14 16 50 H 0.05 2.02 6.11 -2.39 -0.01 2.00 16 51 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -74.67 403.41 0.55 -74.12 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.37 Total: 34.81 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 6.57 Total: 12.72 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -7.57 Total: -115.72 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -0.10 Total: -51.42 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -74.67 0.55 -74.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699859824.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.798 kcal (2) G-P(sol) polarization free energy of solvation -74.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds