Wall clock time and date at job start Tue Mar 31 2020 19:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08997 * 115.54794 * 29.41998 * 3 2 1 5 5 C 1.52995 * 117.49819 * 243.74850 * 3 2 1 6 6 C 1.52998 * 117.49812 * 175.08617 * 3 2 1 7 7 H 1.09003 * 117.49974 * 0.02562 * 6 3 2 8 8 C 1.50699 * 117.49970 * 214.97756 * 6 3 2 9 9 O 1.21274 * 120.00019 * 0.02562 * 8 6 3 10 10 N 1.34777 * 119.99736 * 180.02562 * 8 6 3 11 11 C 1.46923 * 120.63155 * 359.72162 * 10 8 6 12 12 C 1.53626 * 108.53995 * 126.37113 * 11 10 8 13 13 C 1.53036 * 109.24535 * 54.85442 * 12 11 10 14 14 N 1.46900 * 109.46022 * 178.49063 * 13 12 11 15 15 C 1.46892 * 110.99956 * 59.02577 * 14 13 12 16 16 C 1.46899 * 111.00245 * 295.06920 * 14 13 12 17 17 C 1.50700 * 109.47430 * 190.00230 * 16 14 13 18 18 O 1.21291 * 119.99619 * 0.02562 * 17 16 14 19 19 N 1.34775 * 119.99999 * 180.02562 * 17 16 14 20 20 C 1.37097 * 119.99826 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99780 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00083 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99944 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99899 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46828 * 90.00380 * 24 22 20 26 26 H 1.48502 * 109.47192 * 210.00522 * 24 22 20 27 27 H 1.48502 * 109.47126 * 330.00542 * 24 22 20 28 28 C 1.53040 * 109.53838 * 298.51367 * 13 12 11 29 29 C 1.46932 * 120.62897 * 180.02562 * 10 8 6 30 30 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 34 34 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 35 35 H 1.08998 * 117.50115 * 0.02562 * 5 3 2 36 36 H 1.09008 * 117.49820 * 144.99884 * 5 3 2 37 37 H 1.09000 * 109.59024 * 246.20148 * 11 10 8 38 38 H 1.08997 * 109.58944 * 6.63359 * 11 10 8 39 39 H 1.09003 * 109.63516 * 294.86505 * 12 11 10 40 40 H 1.09002 * 109.43168 * 174.72396 * 12 11 10 41 41 H 1.09001 * 109.44850 * 58.52789 * 13 12 11 42 42 H 1.08999 * 109.47268 * 60.00159 * 15 14 13 43 43 H 1.09004 * 109.47173 * 179.97438 * 15 14 13 44 44 H 1.08999 * 109.47106 * 299.99684 * 15 14 13 45 45 H 1.09002 * 109.46831 * 310.00166 * 16 14 13 46 46 H 1.08996 * 109.47011 * 69.99514 * 16 14 13 47 47 H 0.96996 * 120.00202 * 359.97438 * 19 17 16 48 48 H 0.97002 * 119.99856 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.49627 * 301.40853 * 28 13 12 50 50 H 1.09004 * 109.49667 * 181.31338 * 28 13 12 51 51 H 1.09004 * 109.58225 * 353.37295 * 29 10 8 52 52 H 1.09001 * 109.58532 * 113.65484 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3892 2.1712 0.4831 5 6 2.8415 1.9084 -1.2171 6 6 3.5503 1.6578 0.1162 7 1 4.1807 0.7717 0.1923 8 6 4.0242 2.8615 0.8893 9 8 3.2179 3.6157 1.3912 10 7 5.3440 3.0999 1.0228 11 6 6.3328 2.1920 0.4256 12 6 7.2858 3.0171 -0.4526 13 6 7.8934 4.1451 0.3843 14 7 8.8332 4.9153 -0.4414 15 6 8.1581 5.4848 -1.6151 16 6 9.9801 4.0898 -0.8427 17 6 11.0331 4.9650 -1.4723 18 8 10.8466 6.1590 -1.5760 19 7 12.1820 4.4209 -1.9202 20 6 13.1401 5.2171 -2.4925 21 1 12.9740 6.2803 -2.5848 22 6 14.3243 4.6561 -2.9547 23 7 15.2425 5.4193 -3.5037 24 14 14.6112 2.8172 -2.7955 25 1 14.1023 2.1300 -4.0096 26 1 16.0654 2.5537 -2.6505 27 1 13.8938 2.3059 -1.6000 28 6 6.7799 5.0679 0.8849 29 6 5.8213 4.2690 1.7740 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 3.0050 1.1874 -2.0181 36 1 2.7178 2.9438 -1.5349 37 1 6.8968 1.6955 1.2152 38 1 5.8230 1.4474 -0.1857 39 1 6.7348 3.4426 -1.2913 40 1 8.0813 2.3736 -0.8282 41 1 8.4233 3.7198 1.2366 42 1 7.3568 6.1471 -1.2876 43 1 8.8765 6.0503 -2.2087 44 1 7.7401 4.6801 -2.2198 45 1 10.3962 3.5948 0.0348 46 1 9.6534 3.3393 -1.5624 47 1 12.3312 3.4661 -1.8369 48 1 16.0694 5.0277 -3.8260 49 1 6.2338 5.4741 0.0336 50 1 7.2155 5.8841 1.4614 51 1 4.9737 4.8951 2.0527 52 1 6.3423 3.9382 2.6724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700695969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:49 Heat of formation + Delta-G solvation = -60.441439 kcal Electronic energy + Delta-G solvation = -29666.243016 eV Core-core repulsion = 25665.689960 eV Total energy + Delta-G solvation = -4000.553056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.58575 -40.61206 -39.43774 -38.00572 -36.77761 -35.86316 -33.73652 -33.21140 -32.45602 -31.91480 -29.53243 -27.41796 -26.64277 -25.36167 -24.62929 -24.33920 -23.30074 -21.56316 -21.22082 -20.87286 -20.09273 -19.64550 -18.45777 -17.82975 -17.13998 -16.78182 -16.53622 -16.46043 -16.02127 -15.67833 -15.61359 -15.56788 -15.15963 -15.08739 -14.89258 -14.62415 -14.46587 -14.27132 -13.96583 -13.69218 -13.43785 -13.34114 -13.13166 -13.09725 -12.98293 -12.80999 -12.71500 -12.41040 -12.32202 -12.19456 -12.11417 -11.95743 -11.93119 -11.78637 -11.47853 -11.37482 -11.24763 -10.94791 -10.76241 -10.34025 -10.20538 -9.71938 -9.08742 -8.38913 -5.99698 1.31666 1.37609 1.43420 1.46682 1.93355 2.00020 2.25369 2.63025 2.84754 3.17549 3.27170 3.40731 3.72797 3.74298 3.84113 3.89365 3.99818 4.04868 4.13441 4.24078 4.27612 4.28894 4.35194 4.41789 4.47967 4.49117 4.53316 4.56688 4.64732 4.69391 4.77479 4.79963 4.80309 4.89052 4.92418 4.97845 5.02697 5.09061 5.15890 5.21839 5.22373 5.30223 5.33548 5.49360 5.54773 5.55823 5.93619 6.05542 6.24068 6.37538 6.62996 6.91869 7.12640 7.43417 8.01958 8.78893 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020140 B = 0.002084 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.959868 B =13430.551796 C =14189.557952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.123 4.123 4 H 0.090 0.910 5 C -0.139 4.139 6 C -0.192 4.192 7 H 0.153 0.847 8 C 0.536 3.464 9 O -0.591 6.591 10 N -0.606 5.606 11 C 0.113 3.887 12 C -0.167 4.167 13 C 0.088 3.912 14 N -0.533 5.533 15 C 0.026 3.974 16 C 0.056 3.944 17 C 0.450 3.550 18 O -0.608 6.608 19 N -0.592 5.592 20 C -0.327 4.327 21 H 0.052 0.948 22 C -0.018 4.018 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.257 1.257 26 H -0.277 1.277 27 H -0.228 1.228 28 C -0.118 4.118 29 C 0.117 3.883 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.131 0.869 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.038 0.962 45 H 0.121 0.879 46 H 0.083 0.917 47 H 0.390 0.610 48 H 0.278 0.722 49 H 0.054 0.946 50 H 0.078 0.922 51 H 0.074 0.926 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.110 -20.004 8.509 33.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.141 4.141 4 H 0.108 0.892 5 C -0.177 4.177 6 C -0.213 4.213 7 H 0.170 0.830 8 C 0.327 3.673 9 O -0.473 6.473 10 N -0.338 5.338 11 C -0.009 4.009 12 C -0.207 4.207 13 C -0.020 4.020 14 N -0.256 5.256 15 C -0.122 4.122 16 C -0.075 4.075 17 C 0.238 3.762 18 O -0.492 6.492 19 N -0.234 5.234 20 C -0.456 4.456 21 H 0.071 0.929 22 C -0.216 4.216 23 N -0.578 5.578 24 Si 0.786 3.214 25 H -0.181 1.181 26 H -0.203 1.203 27 H -0.151 1.151 28 C -0.156 4.156 29 C -0.006 4.006 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.149 0.851 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.139 0.861 46 H 0.100 0.900 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.072 0.928 50 H 0.097 0.903 51 H 0.092 0.908 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.251 -18.362 8.898 32.464 hybrid contribution 0.601 -0.358 -0.718 1.003 sum -24.650 -18.720 8.180 32.015 Atomic orbital electron populations 1.21753 0.95212 1.02233 1.01687 1.21153 0.96257 0.92143 1.03090 1.22471 0.90937 0.99445 1.01296 0.89176 1.23175 1.00966 1.03024 0.90500 1.22408 0.98044 0.98538 1.02312 0.82975 1.20266 0.81807 0.85984 0.79283 1.90658 1.54805 1.50721 1.51080 1.48185 1.05489 1.26808 1.53282 1.22023 0.89819 0.91572 0.97511 1.22701 1.00119 0.98552 0.99287 1.21842 0.91889 0.92142 0.96153 1.61717 1.08066 1.34808 1.21024 1.22400 0.98483 0.99086 0.92249 1.21833 0.90531 0.93645 1.01524 1.21002 0.83896 0.89196 0.82145 1.90526 1.79770 1.18272 1.60625 1.42023 1.16127 1.09487 1.55791 1.18982 0.97016 0.92807 1.36811 0.92942 1.26145 0.94357 1.05340 0.95734 1.69817 1.08613 1.38693 1.40648 0.85354 0.78994 0.76375 0.80719 1.18119 1.20272 1.15069 1.21882 0.95608 0.98416 0.99738 1.21561 0.97626 0.87052 0.94360 0.93435 0.92657 0.91451 0.91041 0.89976 0.85133 0.89995 0.88883 0.87329 0.91952 0.88736 0.88243 0.91447 0.93193 0.94402 0.86071 0.89966 0.77478 0.91244 0.92764 0.90311 0.90767 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.87 71.98 0.71 -0.67 16 2 C -0.09 -0.79 6.22 30.60 0.19 -0.60 16 3 C -0.12 -1.68 5.25 -10.80 -0.06 -1.74 16 4 H 0.09 1.74 7.60 -2.39 -0.02 1.73 16 5 C -0.14 -1.67 9.88 30.62 0.30 -1.36 16 6 C -0.19 -2.54 4.69 -11.51 -0.05 -2.60 16 7 H 0.15 1.11 6.81 -2.39 -0.02 1.09 16 8 C 0.54 11.06 7.48 87.66 0.66 11.72 16 9 O -0.59 -17.48 15.67 -3.01 -0.05 -17.53 16 10 N -0.61 -10.11 2.97 -818.00 -2.43 -12.54 16 11 C 0.11 1.15 6.33 86.51 0.55 1.70 16 12 C -0.17 -2.31 4.67 30.82 0.14 -2.17 16 13 C 0.09 1.66 2.18 44.94 0.10 1.76 16 14 N -0.53 -15.02 4.49 -901.49 -4.05 -19.06 16 15 C 0.03 0.78 8.46 127.69 1.08 1.86 16 16 C 0.06 1.58 4.89 85.56 0.42 1.99 16 17 C 0.45 19.76 7.47 87.66 0.66 20.41 16 18 O -0.61 -33.30 13.91 -3.07 -0.04 -33.34 16 19 N -0.59 -27.20 5.09 -306.98 -1.56 -28.76 16 20 C -0.33 -18.98 10.16 84.04 0.85 -18.12 16 21 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 22 C -0.02 -0.96 5.50 84.93 0.47 -0.50 16 23 N -0.94 -56.32 13.96 21.66 0.30 -56.02 16 24 Si 0.97 37.79 27.74 68.60 1.90 39.70 16 25 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 26 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 27 H -0.23 -7.31 6.52 99.48 0.65 -6.66 16 28 C -0.12 -2.35 5.11 30.68 0.16 -2.20 16 29 C 0.12 2.12 6.43 86.37 0.56 2.67 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.48 7.88 -2.39 -0.02 0.46 16 35 H 0.13 0.89 8.03 -2.39 -0.02 0.87 16 36 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.11 0.68 5.67 -2.39 -0.01 0.67 16 39 H 0.06 1.05 6.47 -2.39 -0.02 1.04 16 40 H 0.09 1.07 6.69 -2.39 -0.02 1.05 16 41 H 0.10 1.62 8.03 -2.39 -0.02 1.60 16 42 H 0.07 1.92 6.36 -2.39 -0.02 1.90 16 43 H 0.05 1.98 5.83 -2.38 -0.01 1.96 16 44 H 0.04 0.96 6.31 -2.39 -0.02 0.95 16 45 H 0.12 2.72 8.00 -2.39 -0.02 2.71 16 46 H 0.08 1.85 6.90 -2.39 -0.02 1.84 16 47 H 0.39 14.53 5.76 -92.71 -0.53 14.00 16 48 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 49 H 0.05 1.24 6.50 -2.39 -0.02 1.23 16 50 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.07 1.66 7.01 -2.39 -0.02 1.64 16 52 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -82.44 399.81 1.14 -81.30 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: 0.33 Total: 34.09 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 6.72 Total: 12.16 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -7.73 Total: -116.38 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -0.09 Total: -50.87 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.90 Total: 39.70 kcal Total: -82.44 1.14 -81.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700695969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.859 kcal (2) G-P(sol) polarization free energy of solvation -82.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds