Wall clock time and date at job start Tue Mar 31 2020 20:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.47094 * 2 1 4 4 C 1.50698 * 119.99953 * 275.00001 * 3 2 1 5 5 C 1.32998 * 119.99819 * 95.00060 * 3 2 1 6 6 C 1.47100 * 119.99759 * 174.45407 * 5 3 2 7 7 O 1.21615 * 120.00002 * 5.27699 * 6 5 3 8 8 N 1.34775 * 119.99572 * 185.27599 * 6 5 3 9 9 C 1.46505 * 119.99842 * 179.97438 * 8 6 5 10 10 H 1.08996 * 110.37023 * 327.18589 * 9 8 6 11 11 C 1.54268 * 110.32258 * 89.36153 * 9 8 6 12 12 C 1.54379 * 105.05678 * 118.89424 * 11 9 8 13 13 N 1.48563 * 104.59742 * 23.85809 * 12 11 9 14 14 C 1.46899 * 111.00174 * 200.95670 * 13 12 11 15 15 C 1.50696 * 109.46937 * 279.66498 * 14 13 12 16 16 O 1.21286 * 120.00167 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99829 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99836 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00211 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99721 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99945 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99712 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47167 * 60.00080 * 22 20 18 24 24 H 1.48505 * 109.46763 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47250 * 299.99489 * 22 20 18 26 26 C 1.48566 * 104.22062 * 320.51285 * 13 12 11 27 27 H 1.08999 * 110.40976 * 280.70838 * 26 13 12 28 28 C 1.52991 * 110.41459 * 158.26258 * 26 13 12 29 29 C 1.52997 * 109.47424 * 174.29653 * 28 26 13 30 30 H 1.08994 * 109.46955 * 299.99726 * 1 2 3 31 31 H 1.08996 * 109.46814 * 59.99951 * 1 2 3 32 32 H 1.08995 * 109.46707 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47490 * 240.00128 * 2 1 3 34 34 H 1.09000 * 109.47455 * 120.00388 * 2 1 3 35 35 H 1.08998 * 109.47411 * 244.28730 * 4 3 2 36 36 H 1.08995 * 109.47087 * 4.29342 * 4 3 2 37 37 H 1.09002 * 109.46777 * 124.29202 * 4 3 2 38 38 H 1.08004 * 119.99721 * 354.45601 * 5 3 2 39 39 H 0.97003 * 120.00227 * 0.02562 * 8 6 5 40 40 H 1.08993 * 110.32584 * 237.79600 * 11 9 8 41 41 H 1.09003 * 110.32207 * 0.02562 * 11 9 8 42 42 H 1.08997 * 110.41337 * 265.07537 * 12 11 9 43 43 H 1.09001 * 110.40812 * 142.62801 * 12 11 9 44 44 H 1.08999 * 109.46872 * 39.66823 * 14 13 12 45 45 H 1.09004 * 109.47130 * 159.65990 * 14 13 12 46 46 H 0.97003 * 119.99849 * 359.97438 * 17 15 14 47 47 H 0.97006 * 119.99206 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.46726 * 294.29098 * 28 26 13 49 49 H 1.08991 * 109.47175 * 54.28618 * 28 26 13 50 50 H 1.08998 * 109.47481 * 65.22333 * 29 28 26 51 51 H 1.09002 * 109.47383 * 185.23676 * 29 28 26 52 52 H 1.09008 * 109.46508 * 305.22775 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1691 -1.3001 5 6 2.3487 2.0143 1.1474 6 6 2.9532 3.3553 1.1397 7 8 3.0756 3.9611 0.0922 8 7 3.3713 3.9126 2.2934 9 6 3.9738 5.2480 2.2856 10 1 4.5264 5.4095 1.3601 11 6 2.8853 6.3280 2.4550 12 6 3.2510 7.0645 3.7616 13 7 4.7094 6.8339 3.9258 14 6 5.1190 7.0275 5.3232 15 6 5.2771 8.5002 5.6009 16 8 5.0695 9.3089 4.7212 17 7 5.6502 8.9185 6.8265 18 6 5.7935 10.2584 7.0793 19 1 5.6078 10.9786 6.2962 20 6 6.1776 10.6897 8.3431 21 7 6.4031 9.8134 9.2961 22 14 6.3736 12.5153 8.6874 23 1 5.0801 13.2053 8.4505 24 1 6.7883 12.7109 10.0999 25 1 7.4088 13.0808 7.7854 26 6 4.9056 5.4230 3.5040 27 1 4.6157 4.7430 4.3050 28 6 6.3620 5.1841 3.1007 29 6 6.5728 3.6974 2.8074 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 1.8935 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.2276 2.3997 -1.4722 36 1 1.8008 1.5533 -2.1173 37 1 1.6045 3.0958 -1.2511 38 1 2.1617 1.5116 2.0849 39 1 3.2739 3.4293 3.1287 40 1 2.9037 7.0194 1.6127 41 1 1.9028 5.8644 2.5444 42 1 2.7022 6.6414 4.6029 43 1 3.0429 8.1303 3.6681 44 1 4.3592 6.6123 5.9853 45 1 6.0684 6.5209 5.4970 46 1 5.8166 8.2717 7.5300 47 1 6.6716 10.1146 10.1783 48 1 6.5920 5.7666 2.2084 49 1 7.0192 5.4909 3.9142 50 1 5.9851 3.4122 1.9348 51 1 7.6288 3.5120 2.6108 52 1 6.2546 3.1087 3.6679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707190709.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:36 Heat of formation + Delta-G solvation = -64.449971 kcal Electronic energy + Delta-G solvation = -29541.673722 eV Core-core repulsion = 25540.946844 eV Total energy + Delta-G solvation = -4000.726879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.40450 -39.11312 -37.73040 -36.43912 -34.46174 -33.79554 -33.32030 -31.54348 -31.22073 -30.76980 -28.25721 -27.38700 -26.35923 -24.58571 -24.08184 -22.93482 -21.66153 -20.50504 -20.41064 -19.12288 -18.71913 -17.84603 -17.13880 -16.53676 -15.99107 -15.51053 -15.17997 -14.82433 -14.71274 -14.66864 -14.51488 -14.29511 -14.10097 -13.79589 -13.57305 -13.41466 -13.18973 -13.06412 -12.86536 -12.50320 -12.48225 -12.12666 -11.99270 -11.94795 -11.77651 -11.64350 -11.43757 -11.34600 -11.32915 -11.22414 -11.04603 -10.96741 -10.62381 -10.51926 -10.42151 -10.18372 -9.72183 -9.50185 -9.45391 -8.98275 -8.52520 -8.00266 -7.91975 -6.38650 -3.79150 1.12193 3.03802 3.14989 3.22205 3.27369 3.32130 3.94148 4.02399 4.24865 4.33706 4.43591 4.47930 4.71177 4.79166 4.84089 4.93277 5.01004 5.13048 5.14109 5.21440 5.26061 5.28543 5.28845 5.33849 5.44991 5.46246 5.48179 5.49822 5.61076 5.64654 5.73911 5.77423 5.79063 5.82375 5.89316 5.99553 6.02317 6.13745 6.17105 6.21633 6.25331 6.26408 6.33989 6.40027 6.46092 7.11858 7.19417 7.42740 7.57922 8.09519 8.15579 8.65929 9.21857 9.58334 10.11036 10.79213 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027418 B = 0.001943 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.991834 B =14409.375622 C =14594.715985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.029 4.029 4 C -0.116 4.116 5 C -0.234 4.234 6 C 0.545 3.455 7 O -0.540 6.540 8 N -0.719 5.719 9 C 0.149 3.851 10 H 0.101 0.899 11 C -0.132 4.132 12 C 0.039 3.961 13 N -0.476 5.476 14 C 0.035 3.965 15 C 0.447 3.553 16 O -0.574 6.574 17 N -0.567 5.567 18 C -0.297 4.297 19 H 0.102 0.898 20 C 0.021 3.979 21 N -0.904 5.904 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.056 3.944 27 H 0.053 0.947 28 C -0.109 4.109 29 C -0.148 4.148 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.124 0.876 39 H 0.397 0.603 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.094 0.906 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.053 0.947 51 H 0.054 0.946 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.328 -22.656 -13.507 27.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 C -0.031 4.031 4 C -0.172 4.172 5 C -0.255 4.255 6 C 0.335 3.665 7 O -0.419 6.419 8 N -0.370 5.370 9 C 0.044 3.956 10 H 0.119 0.881 11 C -0.171 4.171 12 C -0.089 4.089 13 N -0.200 5.200 14 C -0.097 4.097 15 C 0.232 3.768 16 O -0.457 6.457 17 N -0.205 5.205 18 C -0.427 4.427 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.546 5.546 22 Si 0.757 3.243 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.053 4.053 27 H 0.071 0.929 28 C -0.147 4.147 29 C -0.206 4.206 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.141 0.859 39 H 0.231 0.769 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.113 0.887 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.990 -21.230 -14.949 27.167 hybrid contribution -0.279 -0.308 1.991 2.034 sum -8.269 -21.538 -12.958 26.461 Atomic orbital electron populations 1.21719 0.94148 1.02074 1.02533 1.20792 0.96725 0.92619 1.03326 1.22576 0.90025 0.94889 0.95567 1.21033 1.03742 0.99625 0.92805 1.22378 1.07914 0.96357 0.98853 1.18527 0.78292 0.86160 0.83514 1.90790 1.56128 1.64178 1.30799 1.46036 1.62761 1.18613 1.09587 1.21710 0.93324 0.80967 0.99600 0.88054 1.22743 0.98122 0.97548 0.98713 1.23154 0.87722 1.02390 0.95672 1.65029 1.16253 1.18387 1.20288 1.22073 1.01213 0.97485 0.88910 1.19687 0.84321 0.89095 0.83712 1.90520 1.54976 1.55109 1.45063 1.41852 1.60297 1.08358 1.09978 1.19643 1.43085 0.82990 0.96964 0.88014 1.25243 0.97354 1.00077 0.95322 1.69609 1.47248 1.34294 1.03401 0.85928 0.78917 0.82279 0.77148 1.19967 1.21028 1.19918 1.22934 0.95931 0.90831 0.95599 0.92904 1.21446 0.94556 0.96145 1.02577 1.21756 1.01442 0.96088 1.01332 0.92345 0.92275 0.92101 0.90354 0.90721 0.89926 0.93061 0.89816 0.85857 0.76852 0.90293 0.91228 0.94326 0.88738 0.93077 0.89414 0.77600 0.91913 0.90861 0.91358 0.92770 0.92647 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.90 37.16 0.37 -0.35 16 2 C -0.10 -0.52 6.03 -27.88 -0.17 -0.69 16 3 C -0.03 -0.22 5.36 -101.17 -0.54 -0.77 16 4 C -0.12 -1.02 8.34 36.00 0.30 -0.72 16 5 C -0.23 -1.93 9.61 -37.81 -0.36 -2.30 16 6 C 0.55 5.97 7.73 -12.67 -0.10 5.87 16 7 O -0.54 -7.63 12.75 5.26 0.07 -7.56 16 8 N -0.72 -7.00 4.76 -53.64 -0.26 -7.26 16 9 C 0.15 1.81 2.40 -66.54 -0.16 1.65 16 10 H 0.10 1.42 7.15 -51.93 -0.37 1.05 16 11 C -0.13 -1.74 6.79 -25.35 -0.17 -1.91 16 12 C 0.04 0.60 6.08 -2.18 -0.01 0.58 16 13 N -0.48 -7.83 4.56 -223.57 -1.02 -8.85 16 14 C 0.04 0.62 5.31 -4.98 -0.03 0.59 16 15 C 0.45 10.61 7.69 -10.99 -0.08 10.52 16 16 O -0.57 -15.72 15.29 5.55 0.08 -15.63 16 17 N -0.57 -14.44 5.29 -10.96 -0.06 -14.50 16 18 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 19 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 22 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.06 0.71 1.95 -66.07 -0.13 0.58 16 27 H 0.05 0.59 7.61 -51.93 -0.39 0.20 16 28 C -0.11 -1.32 5.58 -26.74 -0.15 -1.47 16 29 C -0.15 -1.45 9.72 37.16 0.36 -1.09 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.34 8.03 -51.93 -0.42 -0.08 16 35 H 0.08 0.85 7.31 -51.93 -0.38 0.47 16 36 H 0.05 0.35 8.01 -51.93 -0.42 -0.07 16 37 H 0.08 0.88 7.15 -51.93 -0.37 0.51 16 38 H 0.12 0.74 8.05 -52.48 -0.42 0.32 16 39 H 0.40 2.96 8.36 -40.82 -0.34 2.62 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 0.84 7.95 -51.93 -0.41 0.43 16 42 H 0.04 0.56 7.67 -51.93 -0.40 0.16 16 43 H 0.09 1.73 7.66 -51.93 -0.40 1.33 16 44 H 0.05 0.82 7.64 -51.93 -0.40 0.42 16 45 H 0.09 1.41 7.02 -51.93 -0.36 1.05 16 46 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 49 H 0.07 0.88 7.18 -51.93 -0.37 0.50 16 50 H 0.05 0.55 7.54 -51.93 -0.39 0.16 16 51 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 LS Contribution 416.84 15.07 6.28 6.28 Total: -1.00 -32.57 416.84 -9.37 -41.93 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -9.05 Total: 10.82 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.12 Total: 2.50 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.61 Total: -54.55 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.15 Total: -23.19 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.57 -9.37 -41.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707190709.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.517 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds